RchiOBHm_Chr6g0244971

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
910420 .. 912341
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21955

Sequence Viewer

Length: 1038 bp
ATGGTTGCTGAGCTTCAAGAGTCATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTAGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCTAATCATGCTGTTCGTTTCCTTGAGGTTGCTGAGCTGAACTCTGGATCTTCTCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAATATTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGGAGTTTTTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGCTTTAGTGGGTTTTTATGGGACCTAGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCTGAACTCAACATTGTGCAGGAAGACAATGATGCTGACAATGATATGGCATGTGGTGGAATGCAGGATGAATCTGCAGTTGCAGTGACGTGCTCAGCATCATCTGACATCTATGATGACTCTGTAATTGGTAGTGTTCATAGAAGAAGACCACGCTTGAAAGATGCCGATAGTGTTGTTAGTGTTCTCACTGCTGTTGATTCATTAAAACTGCAATATTTAAATAAGCCTTTGTTGAGAAGCATACTAAAAGGTGATTTCCCCAATGCCGCATTTTTACTCAGGCAGTTGTTAATCACATCTTCTGCTATTTTGAGGCTAAATTGCATATTAAGAATGCTCTCATGTCATCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCCTGTTATTGGAATCAGCGGACGCGAGTCAGGTTGGTTGCCTGCATGTTCAATGTTATTCTGCATCTGCAGAGTCCACTAATCTTCTATGGATTCATTCAGAGTACAGATGATAGTGATCCAGATCCAGGAAAAGTCATTCTTATGTGTGTTGACGTACAGCAAGAATTTCCGGCAAGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

345

Amino Acids

38.76

Weight (kDa)

5.53

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 877
AciI CCGC 2 cut(s) 735, 871
AclWI GGATC 4 cut(s) 84, 172, 965, 971
AcsI RAATTY 3 cut(s) 193, 331, 1019
AfaI GTAC 2 cut(s) 958, 1011
AfiI CCNNNNNNNGG 2 cut(s) 861, 980
AgsI TTSAA 8 cut(s) 17, 193, 212, 250, 337, 458, 625, 904
AjiI CACGTC 1 cut(s) 555
AjnI CCWGG 2 cut(s) 215, 979
AluBI AGCT 4 cut(s) 13, 154, 434, 821
AluI AGCT 4 cut(s) 13, 154, 434, 821
Alw21I GWGCWC 1 cut(s) 560
AlwI GGATC 4 cut(s) 84, 172, 965, 971
ApoI RAATTY 3 cut(s) 193, 331, 1019
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 731
AvaII GGWCC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 495, 619
Bbv12I GWGCWC 1 cut(s) 560
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 217, 981
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 2 cut(s) 540, 920
BglII AGATCT 1 cut(s) 264
BisI GCNGC 1 cut(s) 735
BlpI GCTNAGC 3 cut(s) 9, 150, 559
BlsI GCNGC 1 cut(s) 736
Bme1390I CCNGG 2 cut(s) 217, 981
Bme18I GGWCC 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 217, 981
BmsI GCATC 6 cut(s) 249, 313, 487, 572, 619, 925
BoxI GACNNNNGTC 1 cut(s) 878
BpiI GAAGAC 2 cut(s) 495, 619
BplI GAGNNNNNCTC 4 cut(s) 11, 43, 143, 175
Bpu1102I GCTNAGC 3 cut(s) 9, 150, 559
BpuEI CTTGAG 2 cut(s) 156, 161
BsaBI GATNNNNATC 4 cut(s) 39, 263, 969, 975
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 406, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 861, 980
Bse8I GATNNNNATC 4 cut(s) 39, 263, 969, 975
BseBI CCWGG 2 cut(s) 217, 981
BseGI GGATG 1 cut(s) 538
BseJI GATNNNNATC 4 cut(s) 39, 263, 969, 975
BseLI CCNNNNNNNGG 2 cut(s) 861, 980
BseMII CTCAG 3 cut(s) 141, 573, 760
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 877
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 1 cut(s) 1025
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 861, 980
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 2 cut(s) 531, 807
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
Bsp1720I GCTNAGC 3 cut(s) 9, 150, 559
BspACI CCGC 2 cut(s) 735, 871
BspCNI CTCAG 3 cut(s) 142, 572, 759
BspFNI CGCG 1 cut(s) 877
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 383
BspMAI CTGCAG 2 cut(s) 544, 924
BspPI GGATC 4 cut(s) 84, 172, 965, 971
BssMI GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
Bst2UI CCWGG 2 cut(s) 217, 981
BstC8I GCNNGC 4 cut(s) 391, 840, 895, 1030
BstDEI CTNAG 7 cut(s) 9, 64, 150, 240, 435, 559, 746
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 1 cut(s) 877
BstKTI GATC 7 cut(s) 63, 79, 167, 267, 402, 973, 979
BstMBI GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
BstNI CCWGG 2 cut(s) 217, 981
BstNSI RCATGY 4 cut(s) 393, 519, 901, 1036
BstPAI GACNNNNGTC 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 215, 979
BstSFI CTRYAG 2 cut(s) 540, 920
BstUI CGCG 1 cut(s) 877
BstV2I GAAGAC 2 cut(s) 495, 619
BstX2I RGATCY 3 cut(s) 164, 264, 976
BstYI RGATCY 3 cut(s) 164, 264, 976
BtrI CACGTC 1 cut(s) 555
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 2 cut(s) 555, 654
BtsIMutI CAGTG 2 cut(s) 555, 654
Cac8I GCNNGC 4 cut(s) 391, 840, 895, 1030
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 382
CseI GACGC 1 cut(s) 883
Csp6I GTAC 2 cut(s) 957, 1010
CviAII CATG 7 cut(s) 53, 125, 390, 516, 810, 898, 1033
CviJI RGCY 7 cut(s) 13, 154, 215, 434, 694, 784, 821
CviKI_1 RGCY 7 cut(s) 13, 154, 215, 434, 694, 784, 821
CviQI GTAC 2 cut(s) 957, 1010
DdeI CTNAG 7 cut(s) 9, 64, 150, 240, 435, 559, 746
DpnI GATC 7 cut(s) 62, 78, 166, 266, 401, 972, 978
DpnII GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
DraI TTTAAA 2 cut(s) 330, 687
Eco47I GGWCC 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 215, 979
FaeI CATG 7 cut(s) 56, 128, 393, 519, 813, 901, 1036
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FaqI GGGAC 1 cut(s) 395
FatI CATG 7 cut(s) 52, 124, 389, 515, 809, 897, 1032
Fnu4HI GCNGC 1 cut(s) 735
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 735
FspBI CTAG 1 cut(s) 386
GluI GCNGC 1 cut(s) 735
HapII CCGG 1 cut(s) 1025
HgaI GACGC 1 cut(s) 883
Hin1II CATG 7 cut(s) 56, 128, 393, 519, 813, 901, 1036
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 1 cut(s) 819
HinfI GANTC 8 cut(s) 20, 536, 584, 665, 865, 879, 925, 945
HpaII CCGG 1 cut(s) 1025
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 2 cut(s) 929, 1006
Hpy188I TCNGA 4 cut(s) 99, 469, 571, 954
Hpy188III TCNNGA 5 cut(s) 17, 53, 162, 173, 974
Hpy8I GTNNAC 2 cut(s) 929, 1006
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 554, 1008
HpyF3I CTNAG 7 cut(s) 9, 64, 150, 240, 435, 559, 746
HpySE526I ACGT 2 cut(s) 554, 1008
Hsp92II CATG 7 cut(s) 56, 128, 393, 519, 813, 901, 1036
Kzo9I GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
LweI GCATC 6 cut(s) 249, 313, 487, 572, 619, 925
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 554, 1008
MaeIII GTNAC 1 cut(s) 550
MalI GATC 7 cut(s) 62, 78, 166, 266, 401, 972, 978
MboI GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
MboII GAAGA 7 cut(s) 159, 295, 500, 621, 624, 759, 928
MflI RGATCY 3 cut(s) 164, 264, 976
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 7 cut(s) 193, 202, 331, 354, 591, 787, 1019
MlyI GAGTC 4 cut(s) 29, 578, 888, 934
MnlI CCTC 3 cut(s) 136, 301, 774
MseI TTAA 7 cut(s) 71, 104, 329, 671, 686, 758, 797
MslI CAYNNNNRTG 1 cut(s) 995
MspA1I CMGCKG 1 cut(s) 871
MspI CCGG 1 cut(s) 1025
MspR9I CCNGG 2 cut(s) 217, 981
Mva1269I GAATGC 2 cut(s) 531, 807
MvaI CCWGG 2 cut(s) 217, 981
MvnI CGCG 1 cut(s) 877
NdeII GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
NlaIII CATG 7 cut(s) 56, 128, 393, 519, 813, 901, 1036
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 4 cut(s) 393, 519, 901, 1036
PaeI GCATGC 1 cut(s) 393
PagI TCATGA 1 cut(s) 52
PctI GAATGC 2 cut(s) 531, 807
PfeI GAWTC 4 cut(s) 536, 665, 865, 945
PfoI TCCNGGA 1 cut(s) 979
PkrI GCNGC 1 cut(s) 736
PleI GAGTC 4 cut(s) 28, 578, 887, 933
PpsI GAGTC 4 cut(s) 28, 578, 887, 933
PpuMI RGGWCCY 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 215, 979
PspGI CCWGG 2 cut(s) 215, 979
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 1 cut(s) 382
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 2 cut(s) 544, 924
PsuI RGATCY 3 cut(s) 164, 264, 976
RsaI GTAC 2 cut(s) 958, 1011
RsaNI GTAC 2 cut(s) 957, 1010
RseI CAYNNNNRTG 1 cut(s) 995
SaqAI TTAA 7 cut(s) 71, 104, 329, 671, 686, 758, 797
SatI GCNGC 1 cut(s) 735
Sau3AI GATC 7 cut(s) 60, 76, 164, 264, 399, 970, 976
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 4 cut(s) 29, 578, 888, 934
ScrFI CCNGG 2 cut(s) 217, 981
SduI GDGCHC 1 cut(s) 560
SfaNI GCATC 6 cut(s) 249, 313, 487, 572, 619, 925
SfcI CTRYAG 2 cut(s) 540, 920
SinI GGWCC 1 cut(s) 382
SmiI ATTTAAAT 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 995
SmlI CTYRAG 2 cut(s) 140, 171
SmoI CTYRAG 2 cut(s) 140, 171
SphI GCATGC 1 cut(s) 393
Sse9I AATT 7 cut(s) 193, 202, 331, 354, 591, 787, 1019
SsiI CCGC 2 cut(s) 735, 871
SspI AATATT 2 cut(s) 232, 683
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 215, 979
SwaI ATTTAAAT 1 cut(s) 687
TaiI ACGT 2 cut(s) 557, 1011
TaqI TCGA 1 cut(s) 402
TasI AATT 7 cut(s) 193, 202, 331, 354, 591, 787, 1019
TatI WGTACW 1 cut(s) 956
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 4 cut(s) 536, 665, 865, 945
Tru1I TTAA 7 cut(s) 71, 104, 329, 671, 686, 758, 797
Tru9I TTAA 7 cut(s) 71, 104, 329, 671, 686, 758, 797
TscAI CASTG 2 cut(s) 555, 661
TseFI GTSAC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 5 cut(s) 41, 549, 593, 657, 937
TspRI CASTG 2 cut(s) 555, 661
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 3 cut(s) 193, 331, 1019
XceI RCATGY 4 cut(s) 393, 519, 901, 1036
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.