Rmu_sc0001288.1_g000012

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001288.1
OG0000376
Physical Location & Seq
Reverse (-)
61844 .. 74281
12438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001288.1_g000012.1.cds

Sequence Viewer

Length: 5712 bp
atggccgattctggagctaaccctaaacagagacaacccaagaagaacaagaagaagagaaagcagagcggaccccaagaatctgaaaggccacccaagactaaccgcaccaattcatcagagaacgagaatgaaccacaagaccaaaactttgaagttggaaaagctgaaaaacccaatcaaggtggtccgtggaggaacctggagttaattctgtcaatccagaacagagagcttgatcttcacaagaaggtggaactagctcatggttttgtgatgtcgagggtgaaggaagaaggaggcagcagtgatgaggataatcaagcagtgaacatgtcacgtttagtaatttttgtcagtgattgggttcaatcattgttgatttccgaaggaaagaaagttgagagtggtggagagaagcatcaagctgaagttgtgtatacgtatttggatttaagatgctgggagattttcaaattctgtttggaggagtctctgaaattaaatgtttctttaactttctcacggaaccttttacgctctatatgttggattgcaagaagtgcactgtccttattgaacaaaacatttattggtgaagggttacaattgtacactactgtgcttgattgtatttctttggtattttcatcccaagaaggcttctcaaatgaaaatttagacatgtggattacaactaggatgcttctttccaattcttatgtgagaacagaggatgcttctgagggagcttctcttaatttcttgaagaaggtttataatattatcatctcattgtcctcagatttaattcagttgtcagttatacactcagataattttactctaatagcaaatgaggtactttctgctgttggctatcttttggaaattgaatatgatgttctagagaatgatctagtaagcttgtggttaatgatcctctcttactgggccattgggctttctttggtggattctccggatagatgctcaatattctccaagataacagatattggatgccaattaattatgctctatagtcaacttcgccaggtgaataatactatctttgcattgtgtaaagcaataagggttattaatttacataatagcgatggtgaactgaactatactagatttgtcattccttttcatggtgaagcatatgcaaaagctgtggaaatgctattatctgcacacgaattcaaaattgcaattcataaagcaatgaagtccataccagaaggacaagcaagtcaatgtattcagcagttaacattggatatatcagaatctctagagtggatgaaagttagttgttcggaggctgatgaaaaagaattttctgaatgccatctaagtagcttgcacaattttaatctggaagctgaacttttcgggagagggttgtcagaaatatatgcattattcctagagtcattgattgtcacaactggaaactgtaaccttcttggcgcttctataaaggaattaattagagtgattttcccttgcatgagcaatctggttggaccacagcaggaggatgctgtaaacaaattcctgtggtctgtcgcggtaaaagattctgacaatgtgatcactagaaacaaatacaaatatatgatatttggagtctccacttattgggtagttttgttcttctttcgattgtatagctcctgccgatgcttatataggcaagcagcaatccttatgcctccagatttatcaagaaagatgtctgcagaaatgggagattcgttctcttcattctctggcagggattggatggaaatgtctgattggattaatgggggatttttctcttggattgtacaaccttcagcttctcttttttctgttattcaatctgtttcaaacatcttttgtaaggaccgtgcagctgattcttgtcctttaacttatgtaatgcatgccatggcttgtgaaaggcttgtggatttgaatagtcgtataaagtcttttgaatatttgattgaaaatggtgacaatctggtgcaagttgcggacatctcttctttgaggcaagaggcagcaggactcacgggatttatgatggggcacctctcattagtgtctgaagatcaacagcgaatattcatttctgctgatacgactaataataagatggttgactatgaaagtgatgaatgggatttcagtatttgctctgttaacaagaagtcattgccaactgcactttggtgggttgtttgccaaaatattcatgcatggtgccctcatgcctctaaaaaggatttgaagagattcctttctcttttaatccatacttcaattccctatgtaagaagcagctttggggtggttatagagcacaagaaccatgaagctgacaggctgaagaatgtggcattgcatcaaatctcatcacagtgctttatcgattccagtctgtatgagcaaagatttgtccgcaggtattttgcaaagaggttctgccgtgcattggagaaatctacattaccattcatcggcgactttccatccggcaatgttaaattcaaatcatcacctaattggccaaatgtcttaagtgatttagagaactcatcattggctatttcctgcaacaaactcaatgtatttgattgttcctcagcctcaagttgcaagggacaaaactcccaaccatctaccatcatgaaatttacagcttgtcagagtttgcttaatcttttgagttgcatgccaaaaggtcatttggacacgagatcattttcacgttatgtgacttctattctgaaccttgaaaggattgttgttggcagcttattagattatcagaatgcttcatactcaacttattattatgagctcttcagattgtttgtgtcctgtcggaaggccttacgatgtataattactgcttgtgaggagacagtagccggtcgaacctcagacactgtactctttgaggatttatttccagtttcatggctttacaagtcagtgcatatggttgctgggcttcaagaatcattctcaaaagatatttatcatcaagttcatgatatgatcttggcattaatggaccacacattttatgtgtttctgacattaaataaatatcaatccaatcatgctgttcgtttccttgaggttgctgagctgaattttggatgtgcccaagaacagagaagtttattgaattcgtccaattatattgaagcctggaaaagtgtaaacgatgttgctaagattttgaaggaacagatgcagatcttacttgtaaatgtgaagaatggcatttttaatggaaaagaggaagtttctgttgatgctttaaatttgaacaagtttgcttccataatttcgtgttttagtgggtttttatggggcctagcgtgtgttgtgatcgacacagatgggagaaattgtgatgagaaagctaagttgtcaaggttgaaacttgaaccaatctccgaattcaacctctgcataaaggtttttgaagaaatttctagtcttctactacaaatgtttattcttgacgataatcagcagtccacaactatatgtcatgcctataatcttcagaagtcgggctacaatttagattttttgggtgcagagaagatttttccggaaggcgatgatgctgacactgatatggcatgtggtggactgcaggatgaatctgcagttgcagtgacgtgctcagcatcatctgacatctgtgaagactctgtaattggtagtgttcatagaagaagaccgcgcttgaaagatgcaaatagtgttgttactgttctcactgctgttgattcatttgaactgcaatctttaaataagcctttgttgagaagcatgctaaaaggtgatttccccaacgcagcattcttactgaggcagttgttaattgcctcttctgctattttaaggctaaatttgcatattaagagcgctcccatgttgtcaagcttggtgcataagtttgctggcattatgcaagtcttgttattggaatcagcggacacaagtcaggtgccacacttctattattttgtgtgtttagatggtgttctgaagtatctgggagaattagggaatcattttcctttgactaatcctaccttatccagagatttgtttgacaagatggttcagctacagttacgggctctagggaaatgcataactttacaagggaaaagagcaactcttgcatctcatgaaacaagcaccaacacacccttaggagaaaggagattttctgaagcatcatctttttctggctgggaatatttattggatgaattcaaagctaggttgaggtcatcatttgcagtgttcataaataaatcaacagagttgcatctccaatctgcagttcaagctatcgaaagagccctagttggtgtgcgggaagggtgcacagtgaggtatgacatatgtgttggaagtgaagatggaggaaaggtttcttcaattgttgcatctggcattgattgcttggatttggttctggaatttgtttcaggacgcaatttgattgtggttaaaaaatacattcagaggttaattgcctgcatgttcaatgttattctgcatctgcagagtccactaatcttctatgagagattaactatgagtaaagatgatagtgatccagatccaggaacagtcattcttatgtgtgttgatgtactggcaagaatttctggcaagcatgcaatatacaaaatggatctctggcatgtagcgcactcgttacgtataccttcagcactttttgaagatttccatctgttaaaacattctaaatgtcctgttccaaatgattcttcaacaagtccaaataaccaaccatccgatcctgtagcaagtgtacatgtctctggcatagataggcaatactcaatcggtctatattctgcttgctgccgattactgcataatgttgtgaagcatcacaaaagtgaatgcgaggggtatgttgctctacttcaagcttctgttcgtgttcttctttattgtttggagacattggatgctgttgtggtagccagggaaggcttcttttcttgggaagtagaagaaggagtcaaatgtgcatgttctctcagaaggatttatgaagagctaagacatcaaaaagaggtctttggtccacactgttaccactttttagcttattacatacgggtttattcaggatatggcccccgcaaaacaggcatcaaaagccgcaccattgctgttgcttgccattgttcactggttgtcatcaatggaaacgaagaagccctatatgatgccaccatgttggaagtgcaggcatgcttgctaaagtatgtcatatttcctccatctatggtccatgcagactttaggggcggcaccgcagatgcatcctccaatatactctcagtctttctgggcttctcatggtactcctcctacgagtcagctgtggaagaagttgaatcacaattcaactgggtccttttggtcacaccaatagtcctacttctcatagttcagtggctctcatctatggagccggattggctctttgccatgtcaccctgggaacaacgtcgtagaacccacaaccgtccgtcggaggggagctcaccgtggggtgttgctgctgtcattgtgctcttgctggttctgctgcagtttcagtccattttccgagatagctggcttatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

1903

Amino Acids

214.58

Weight (kDa)

6.01

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AasI GACNNNNNNGTC 1 cut(s) 1260
Acc36I ACCTGC 1 cut(s) 2457
AccB1I GGYRCC 4 cut(s) 2091, 2265, 4036, 5390
AccB7I CCANNNNNTGG 1 cut(s) 1653
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 2 cut(s) 440, 4768
AccII CGCG 2 cut(s) 1583, 3769
AccIII TCCGGA 2 cut(s) 982, 3634
AclWI GGATC 5 cut(s) 934, 4652, 4658, 4746, 4859
AcoI YGGCCR 2 cut(s) 3, 2570
AcuI CTGAAG 9 cut(s) 450, 1836, 2130, 2411, 2854, 3569, 4097, 4287, 4758
AfaI GTAC 7 cut(s) 614, 864, 1845, 2958, 4698, 4881, 5444
AfeI AGCGCT 1 cut(s) 3955
AfiI CCNNNNNNNGG 8 cut(s) 182, 1160, 1653, 2497, 2522, 4667, 5614, 5618
AflII CTTAAG 1 cut(s) 2581
AflIII ACRYGT 3 cut(s) 333, 684, 4882
AjiI CACGTC 1 cut(s) 3705
AjnI CCWGG 6 cut(s) 201, 1056, 3221, 4666, 5057, 5579
AjuI GAANNNNNNNTTGG 8 cut(s) 2588, 2620, 3872, 3904, 4365, 4397, 4819, 4851
AleI CACNNNNGTG 3 cut(s) 620, 2233, 4968
Alw21I GWGCWC 7 cut(s) 568, 2367, 2868, 3710, 4427, 5627, 5658
Alw26I GTCTC 6 cut(s) 25, 498, 1648, 2921, 4891, 5027
Alw44I GTGCAC 2 cut(s) 564, 4423
AlwI GGATC 5 cut(s) 934, 4652, 4658, 4746, 4859
AlwNI CAGNNNCTG 1 cut(s) 2954
Aor13HI TCCGGA 2 cut(s) 982, 3634
Aor51HI AGCGCT 1 cut(s) 3955
AoxI GGCC 7 cut(s) 3, 89, 954, 2570, 2895, 3388, 5212
ApaLI GTGCAC 2 cut(s) 564, 4423
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AseI ATTAAT 5 cut(s) 1031, 1104, 1499, 1818, 3077
Asp700I GAANNNNTTC 2 cut(s) 2297, 4471
AspLEI GCGC 4 cut(s) 1484, 3771, 3956, 4756
AvaII GGWCC 8 cut(s) 71, 188, 1538, 1903, 3082, 5159, 5368, 5494
AxyI CCTNAGG 1 cut(s) 4246
BaeGI GKGCMC 5 cut(s) 568, 2094, 2270, 3178, 4427
BalI TGGCCA 1 cut(s) 2572
BanI GGYRCC 4 cut(s) 2091, 2265, 4036, 5390
BanII GRGCYC 4 cut(s) 2868, 4174, 4402, 5627
BarI GAAGNNNNNNTAC 2 cut(s) 3581, 3613
BauI CACGAG 1 cut(s) 2758
BbsI GAAGAC 3 cut(s) 3509, 3738, 3769
Bbv12I GWGCWC 7 cut(s) 568, 2367, 2868, 3710, 4427, 5627, 5658
BbvCI CCTCAGC 1 cut(s) 2647
BceAI ACGGC 1 cut(s) 2475
BciT130I CCWGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
BclI TGATCA 1 cut(s) 1605
BcoDI GTCTC 6 cut(s) 25, 498, 1648, 2921, 4891, 5027
BfmI CTRYAG 9 cut(s) 1042, 1752, 3677, 3690, 4160, 4377, 4604, 4869, 5672
BfoI RGCGCY 2 cut(s) 1485, 3957
BfrI CTTAAG 1 cut(s) 2581
BfuAI ACCTGC 1 cut(s) 2457
BglI GCCNNNNNGGC 1 cut(s) 5560
BglII AGATCT 1 cut(s) 3270
BlpI GCTNAGC 2 cut(s) 3156, 3709
Bme1390I CCNGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
Bme18I GGWCC 8 cut(s) 71, 188, 1538, 1903, 3082, 5159, 5368, 5494
BmgBI CACGTC 1 cut(s) 3705
BmrFI CCNGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
BmrI ACTGGG 2 cut(s) 961, 5500
BmuI ACTGGG 2 cut(s) 961, 5500
BoxI GACNNNNGTC 1 cut(s) 4029
BpiI GAAGAC 3 cut(s) 3509, 3738, 3769
BplI GAGNNNNNCTC 2 cut(s) 5609, 5641
BpmI CTGGAG 3 cut(s) 33, 224, 1713
Bpu10I CCTNAGC 1 cut(s) 2647
Bpu1102I GCTNAGC 2 cut(s) 3156, 3709
BpuEI CTTGAG 2 cut(s) 2638, 3167
Bsa29I ATCGAT 1 cut(s) 2433
BsaAI YACGTR 2 cut(s) 444, 4766
BsaBI GATNNNNATC 5 cut(s) 3045, 3269, 4656, 4662, 4794
BsaJI CCNNGG 6 cut(s) 191, 1947, 5058, 5579, 5580, 5630
BsaWI WCCGGW 2 cut(s) 982, 3634
BsaXI ACNNNNNCTCC 4 cut(s) 3412, 3442, 4455, 4485
Bsc4I CCNNNNNNNGG 8 cut(s) 182, 1160, 1653, 2497, 2522, 4667, 5614, 5618
Bse118I RCCGGY 1 cut(s) 2936
Bse1I ACTGG 7 cut(s) 956, 1465, 2439, 2978, 4704, 5274, 5495
Bse21I CCTNAGG 1 cut(s) 4246
Bse3DI GCAATG 5 cut(s) 1239, 2216, 2402, 2548, 5244
Bse8I GATNNNNATC 5 cut(s) 3045, 3269, 4656, 4662, 4794
BseAI TCCGGA 2 cut(s) 982, 3634
BseBI CCWGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
BseCI ATCGAT 1 cut(s) 2433
BseDI CCNNGG 6 cut(s) 191, 1947, 5058, 5579, 5580, 5630
BseJI GATNNNNATC 5 cut(s) 3045, 3269, 4656, 4662, 4794
BseLI CCNNNNNNNGG 8 cut(s) 182, 1160, 1653, 2497, 2522, 4667, 5614, 5618
BseMI GCAATG 5 cut(s) 1239, 2216, 2402, 2548, 5244
BseNI ACTGG 7 cut(s) 956, 1465, 2439, 2978, 4704, 5274, 5495
BseRI GAGGAG 3 cut(s) 503, 2939, 5437
BseSI GKGCMC 5 cut(s) 568, 2094, 2270, 3178, 4427
BseYI CCCAGC 3 cut(s) 462, 3014, 4287
BsgI GTGCAG 5 cut(s) 1185, 1929, 2211, 3639, 5345
Bsh1236I CGCG 2 cut(s) 1583, 3769
Bsh1285I CGRYCG 1 cut(s) 2941
BshFI GGCC 7 cut(s) 5, 91, 956, 2572, 2897, 3390, 5214
BshNI GGYRCC 4 cut(s) 2091, 2265, 4036, 5390
BshVI ATCGAT 1 cut(s) 2433
BsiEI CGRYCG 1 cut(s) 2941
BsiHKAI GWGCWC 7 cut(s) 568, 2367, 2868, 3710, 4427, 5627, 5658
BsiSI CCGG 5 cut(s) 983, 2538, 2937, 3635, 5555
BslFI GGGAC 1 cut(s) 2679
BslI CCNNNNNNNGG 8 cut(s) 182, 1160, 1653, 2497, 2522, 4667, 5614, 5618
BsmAI GTCTC 6 cut(s) 25, 498, 1648, 2921, 4891, 5027
BsmFI GGGAC 1 cut(s) 2679
BsmI GAATGC 4 cut(s) 1361, 2842, 3887, 4979
BsnI GGCC 7 cut(s) 5, 91, 956, 2572, 2897, 3390, 5214
Bsp13I TCCGGA 2 cut(s) 982, 3634
Bsp1407I TGTACA 3 cut(s) 612, 1843, 4879
Bsp1720I GCTNAGC 2 cut(s) 3156, 3709
Bsp19I CCATGG 1 cut(s) 1947
BspANI GGCC 7 cut(s) 5, 91, 956, 2572, 2897, 3390, 5214
BspDI ATCGAT 1 cut(s) 2433
BspEI TCCGGA 2 cut(s) 982, 3634
BspFNI CGCG 2 cut(s) 1583, 3769
BspHI TCATGA 3 cut(s) 2691, 3058, 4222
BspMAI CTGCAG 6 cut(s) 1756, 3681, 3694, 4381, 4608, 5676
BspMI ACCTGC 1 cut(s) 2457
BspPI GGATC 5 cut(s) 934, 4652, 4658, 4746, 4859
BspQI GCTCTTC 2 cut(s) 2873, 5124
BspT107I GGYRCC 4 cut(s) 2091, 2265, 4036, 5390
BspTI CTTAAG 1 cut(s) 2581
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 5 cut(s) 1239, 2216, 2402, 2548, 5244
BsrFI RCCGGY 1 cut(s) 2936
BsrGI TGTACA 3 cut(s) 612, 1843, 4879
BsrI ACTGG 7 cut(s) 956, 1465, 2439, 2978, 4704, 5274, 5495
BssAI RCCGGY 1 cut(s) 2936
BssECI CCNNGG 6 cut(s) 191, 1947, 5058, 5579, 5580, 5630
BssNAI GTATAC 2 cut(s) 441, 4769
BssSI CACGAG 1 cut(s) 2758
BssT1I CCWWGG 1 cut(s) 1947
Bst1107I GTATAC 2 cut(s) 441, 4769
Bst2BI CACGAG 1 cut(s) 2758
Bst2UI CCWGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
Bst6I CTCTTC 7 cut(s) 50, 1780, 2050, 2288, 2873, 3922, 5124
BstAFI CTTAAG 1 cut(s) 2581
BstAPI GCANNNNNTGC 3 cut(s) 563, 4214, 4500
BstAUI TGTACA 3 cut(s) 612, 1843, 4879
BstBAI YACGTR 2 cut(s) 444, 4766
BstDSI CCRYGG 3 cut(s) 191, 1947, 5630
BstFNI CGCG 2 cut(s) 1583, 3769
BstH2I RGCGCY 2 cut(s) 1485, 3957
BstHHI GCGC 4 cut(s) 1484, 3771, 3956, 4756
BstMAI GTCTC 6 cut(s) 25, 498, 1648, 2921, 4891, 5027
BstMCI CGRYCG 1 cut(s) 2941
BstNI CCWGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
BstPAI GACNNNNGTC 1 cut(s) 4029
BstSCI CCNGG 6 cut(s) 201, 1056, 3221, 4666, 5057, 5579
BstSFI CTRYAG 9 cut(s) 1042, 1752, 3677, 3690, 4160, 4377, 4604, 4869, 5672
BstSLI GKGCMC 5 cut(s) 568, 2094, 2270, 3178, 4427
BstSNI TACGTA 2 cut(s) 444, 4766
BstUI CGCG 2 cut(s) 1583, 3769
BstV2I GAAGAC 3 cut(s) 3509, 3738, 3769
BstX2I RGATCY 3 cut(s) 3270, 4663, 4738
BstXI CCANNNNNNTGG 2 cut(s) 2985, 5317
BstYI RGATCY 3 cut(s) 3270, 4663, 4738
BstZ17I GTATAC 2 cut(s) 441, 4769
Bsu15I ATCGAT 1 cut(s) 2433
Bsu36I CCTNAGG 1 cut(s) 4246
BsuRI GGCC 7 cut(s) 5, 91, 956, 2572, 2897, 3390, 5214
BsuTUI ATCGAT 1 cut(s) 2433
BtgI CCRYGG 3 cut(s) 191, 1947, 5630
BtgZI GCGATG 2 cut(s) 1134, 3657
BtrI CACGTC 1 cut(s) 3705
BtsI GCAGTG 5 cut(s) 313, 333, 3705, 3804, 4344
BveI ACCTGC 1 cut(s) 2457
CaiI CAGNNNCTG 1 cut(s) 2954
CciI TCATGA 3 cut(s) 2691, 3058, 4222
CfoI GCGC 4 cut(s) 1484, 3771, 3956, 4756
Cfr10I RCCGGY 1 cut(s) 2936
ClaI ATCGAT 1 cut(s) 2433
CseI GACGC 1 cut(s) 4542
Csp6I GTAC 7 cut(s) 613, 863, 1844, 2957, 4697, 4880, 5443
CspCI CAANNNNNGTGG 4 cut(s) 166, 201, 1164, 1199
CviQI GTAC 7 cut(s) 613, 863, 1844, 2957, 4697, 4880, 5443
DraI TTTAAA 2 cut(s) 3336, 3837
DrdI GACNNNNNNGTC 1 cut(s) 1260
DseDI GACNNNNNNGTC 1 cut(s) 1260
EaeI YGGCCR 2 cut(s) 3, 2570
Eam1104I CTCTTC 7 cut(s) 50, 1780, 2050, 2288, 2873, 3922, 5124
EarI CTCTTC 7 cut(s) 50, 1780, 2050, 2288, 2873, 3922, 5124
Ecl136II GAGCTC 2 cut(s) 2866, 5625
Eco105I TACGTA 2 cut(s) 444, 4766
Eco130I CCWWGG 1 cut(s) 1947
Eco147I AGGCCT 1 cut(s) 2897
Eco24I GRGCYC 4 cut(s) 2868, 4174, 4402, 5627
Eco47I GGWCC 8 cut(s) 71, 188, 1538, 1903, 3082, 5159, 5368, 5494
Eco47III AGCGCT 1 cut(s) 3955
Eco53kI GAGCTC 2 cut(s) 2866, 5625
Eco57I CTGAAG 9 cut(s) 450, 1836, 2130, 2411, 2854, 3569, 4097, 4287, 4758
Eco81I CCTNAGG 1 cut(s) 4246
EcoICRI GAGCTC 2 cut(s) 2866, 5625
EcoO109I RGGNCCY 2 cut(s) 3388, 5494
EcoRI GAATTC 4 cut(s) 1208, 3199, 3476, 4307
EcoRII CCWGG 6 cut(s) 201, 1056, 3221, 4666, 5057, 5579
EcoT14I CCWWGG 1 cut(s) 1947
EcoT22I ATGCAT 5 cut(s) 1432, 1944, 2263, 4187, 5404
EcoT38I GRGCYC 4 cut(s) 2868, 4174, 4402, 5627
ErhI CCWWGG 1 cut(s) 1947
FalI AAGNNNNNCTT 2 cut(s) 1383, 1415
FaqI GGGAC 1 cut(s) 2679
FauI CCCGC 2 cut(s) 4407, 5225
FauNDI CATATG 3 cut(s) 1171, 3006, 4442
FbaI TGATCA 1 cut(s) 1605
FblI GTMKAC 2 cut(s) 440, 4768
FriOI GRGCYC 4 cut(s) 2868, 4174, 4402, 5627
GlaI GCGC 4 cut(s) 1483, 3770, 3955, 4755
GsaI CCCAGC 3 cut(s) 466, 3018, 4291
GsuI CTGGAG 3 cut(s) 33, 224, 1713
HaeII RGCGCY 2 cut(s) 1485, 3957
HaeIII GGCC 7 cut(s) 5, 91, 956, 2572, 2897, 3390, 5214
HapII CCGG 5 cut(s) 983, 2538, 2937, 3635, 5555
HgaI GACGC 1 cut(s) 4542
HhaI GCGC 4 cut(s) 1484, 3771, 3956, 4756
Hin6I GCGC 4 cut(s) 1482, 3769, 3954, 4754
HinP1I GCGC 4 cut(s) 1482, 3769, 3954, 4754
HincII GTYRAC 4 cut(s) 1049, 1281, 2164, 2206
HindII GTYRAC 4 cut(s) 1049, 1281, 2164, 2206
HindIII AAGCTT 3 cut(s) 925, 3970, 5001
HpaI GTTAAC 2 cut(s) 1281, 2206
HpaII CCGG 5 cut(s) 983, 2538, 2937, 3635, 5555
Hpy99I CGWCG 2 cut(s) 5595, 5617
HpyCH4IV ACGT 6 cut(s) 340, 443, 2773, 3704, 4765, 5590
HpySE526I ACGT 6 cut(s) 340, 443, 2773, 3704, 4765, 5590
HspAI GCGC 4 cut(s) 1482, 3769, 3954, 4754
Kpn2I TCCGGA 2 cut(s) 982, 3634
Ksp22I TGATCA 1 cut(s) 1605
KspAI GTTAAC 2 cut(s) 1281, 2206
LguI GCTCTTC 2 cut(s) 2873, 5124
LmnI GCTCC 6 cut(s) 14, 749, 1691, 3961, 5551, 5622
MaeII ACGT 6 cut(s) 340, 443, 2773, 3704, 4765, 5590
MbiI CCGCTC 1 cut(s) 69
MfeI CAATTG 2 cut(s) 608, 4479
MflI RGATCY 3 cut(s) 3270, 4663, 4738
MlsI TGGCCA 1 cut(s) 2572
MluNI TGGCCA 1 cut(s) 2572
MlyI GAGTC 8 cut(s) 500, 1451, 1650, 2064, 3728, 4618, 5103, 5465
MmeI TCCRAC 7 cut(s) 139, 530, 1516, 2870, 4429, 5298, 5595
Mox20I TGGCCA 1 cut(s) 2572
Mph1103I ATGCAT 5 cut(s) 1432, 1944, 2263, 4187, 5404
MroI TCCGGA 2 cut(s) 982, 3634
MroXI GAANNNNTTC 2 cut(s) 2297, 4471
MscI TGGCCA 1 cut(s) 2572
MslI CAYNNNNRTG 6 cut(s) 620, 2233, 2422, 3659, 4682, 4968
Msp20I TGGCCA 1 cut(s) 2572
MspA1I CMGCKG 3 cut(s) 1913, 4022, 5462
MspCI CTTAAG 1 cut(s) 2581
MspI CCGG 5 cut(s) 983, 2538, 2937, 3635, 5555
MspR9I CCNGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
MunI CAATTG 2 cut(s) 608, 4479
Mva1269I GAATGC 4 cut(s) 1361, 2842, 3887, 4979
MvaI CCWGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
MvnI CGCG 2 cut(s) 1583, 3769
NcoI CCATGG 1 cut(s) 1947
NdeI CATATG 3 cut(s) 1171, 3006, 4442
NmuCI GTSAC 7 cut(s) 336, 1453, 2015, 2779, 3700, 5503, 5574
NsiI ATGCAT 5 cut(s) 1432, 1944, 2263, 4187, 5404
OliI CACNNNNGTG 3 cut(s) 620, 2233, 4968
PaeI GCATGC 5 cut(s) 1946, 2740, 3862, 4724, 5334
PagI TCATGA 3 cut(s) 2691, 3058, 4222
PasI CCCWGGG 1 cut(s) 5580
PceI AGGCCT 1 cut(s) 2897
PciI ACATGT 3 cut(s) 333, 684, 4882
PciSI GCTCTTC 2 cut(s) 2873, 5124
PctI GAATGC 4 cut(s) 1361, 2842, 3887, 4979
PdmI GAANNNNTTC 2 cut(s) 2297, 4471
PflMI CCANNNNNTGG 1 cut(s) 1653
PfoI TCCNGGA 1 cut(s) 4666
PleI GAGTC 8 cut(s) 499, 1450, 1649, 2064, 3728, 4617, 5102, 5464
PpsI GAGTC 8 cut(s) 499, 1450, 1649, 2064, 3728, 4617, 5102, 5464
Ppu21I YACGTR 2 cut(s) 444, 4766
PpuMI RGGWCCY 1 cut(s) 5494
PscI ACATGT 3 cut(s) 333, 684, 4882
PshAI GACNNNNGTC 1 cut(s) 4029
PshBI ATTAAT 5 cut(s) 1031, 1104, 1499, 1818, 3077
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 2 cut(s) 2868, 5627
Psp5II RGGWCCY 1 cut(s) 5494
Psp6I CCWGG 6 cut(s) 201, 1056, 3221, 4666, 5057, 5579
PspFI CCCAGC 3 cut(s) 462, 3014, 4287
PspGI CCWGG 6 cut(s) 201, 1056, 3221, 4666, 5057, 5579
PspPPI RGGWCCY 1 cut(s) 5494
PstI CTGCAG 6 cut(s) 1756, 3681, 3694, 4381, 4608, 5676
PstNI CAGNNNCTG 1 cut(s) 2954
PsuI RGATCY 3 cut(s) 3270, 4663, 4738
PvuII CAGCTG 2 cut(s) 1913, 5462
RsaI GTAC 7 cut(s) 614, 864, 1845, 2958, 4698, 4881, 5444
RsaNI GTAC 7 cut(s) 613, 863, 1844, 2957, 4697, 4880, 5443
RseI CAYNNNNRTG 6 cut(s) 620, 2233, 2422, 3659, 4682, 4968
SacI GAGCTC 2 cut(s) 2868, 5627
SapI GCTCTTC 2 cut(s) 2873, 5124
SchI GAGTC 8 cut(s) 500, 1451, 1650, 2064, 3728, 4618, 5103, 5465
ScrFI CCNGG 6 cut(s) 203, 1058, 3223, 4668, 5059, 5581
SfcI CTRYAG 9 cut(s) 1042, 1752, 3677, 3690, 4160, 4377, 4604, 4869, 5672
SinI GGWCC 8 cut(s) 71, 188, 1538, 1903, 3082, 5159, 5368, 5494
SmiMI CAYNNNNRTG 6 cut(s) 620, 2233, 2422, 3659, 4682, 4968
SmlI CTYRAG 3 cut(s) 2581, 2653, 3146
SmoI CTYRAG 3 cut(s) 2581, 2653, 3146
SnaBI TACGTA 2 cut(s) 444, 4766
SphI GCATGC 5 cut(s) 1946, 2740, 3862, 4724, 5334
SseBI AGGCCT 1 cut(s) 2897
SspI AATATT 6 cut(s) 784, 999, 2000, 2127, 2254, 4295
SstI GAGCTC 2 cut(s) 2868, 5627
StuI AGGCCT 1 cut(s) 2897
StyD4I CCNGG 6 cut(s) 201, 1056, 3221, 4666, 5057, 5579
StyI CCWWGG 1 cut(s) 1947
TaiI ACGT 6 cut(s) 343, 446, 2776, 3707, 4768, 5593
TaqI TCGA 6 cut(s) 281, 1675, 2433, 2941, 3408, 4392
TaqII GACCGA 1 cut(s) 4904
TatI WGTACW 5 cut(s) 612, 1843, 2956, 4696, 4879
TauI GCSGC 2 cut(s) 5241, 5391
TseFI GTSAC 7 cut(s) 336, 1453, 2015, 2779, 3700, 5503, 5574
Tsp45I GTSAC 7 cut(s) 336, 1453, 2015, 2779, 3700, 5503, 5574
TspGWI ACGGA 3 cut(s) 180, 541, 5601
Van91I CCANNNNNTGG 1 cut(s) 1653
Vha464I CTTAAG 1 cut(s) 2581
VneI GTGCAC 2 cut(s) 564, 4423
VpaK11BI GGWCC 8 cut(s) 71, 188, 1538, 1903, 3082, 5159, 5368, 5494
VspI ATTAAT 5 cut(s) 1031, 1104, 1499, 1818, 3077
XbaI TCTAGA 2 cut(s) 907, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 2229
XmiI GTMKAC 2 cut(s) 440, 4768
XmnI GAANNNNTTC 2 cut(s) 2297, 4471
Zsp2I ATGCAT 5 cut(s) 1432, 1944, 2263, 4187, 5404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.