Rmu_sc0002202.1_g000017

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000376
Physical Location & Seq
Reverse (-)
85043 .. 85856
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000017.1.cds

Sequence Viewer

Length: 450 bp
atggccgattctaaacagagacaacccaagaagaacaagaagaagagaaagcagagcgggcccaatgaatctgaaaggccgcccaaaactaaccgcaccaattcatcagagaacgagaatgaaccacaagaccaaaactttgaagttggaagagctgaaaaacccaatcaaggtggtccatggaggaacctggagttaattctgtcaatccagaacagagatcttgatcttcacaagaaggtggaactagctcatggttttgtgatgtcgagggtgaaggaaggaggcagcagtgatgagggtaatcaagcggtgaacatgtcacgtttaattatatttgtcagtgattgggtccaatccttgttgatttccgaaggaaagaaagttgagaatggtggagagaagcatcaagctgaagttatatatacgtatttggatttaagatgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

149

Amino Acids

16.97

Weight (kDa)

8.99

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 57
AciI CCGC 4 cut(s) 57, 80, 94, 311
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 155, 251, 413
AluI AGCT 3 cut(s) 155, 251, 413
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 3 cut(s) 3, 59, 77
ApaI GGGCCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 288
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspS9I GGNCC 4 cut(s) 59, 60, 176, 352
AsuHPI GGTGA 2 cut(s) 286, 325
AvaII GGWCC 2 cut(s) 176, 352
BaeGI GKGCMC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 248, 448
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 80, 289
BlsI GCNGC 2 cut(s) 81, 290
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 2 cut(s) 176, 352
BmgT120I GGNCC 4 cut(s) 59, 60, 176, 352
BmiI GGNNCC 3 cut(s) 61, 188, 353
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 415, 434
BpmI CTGGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 179
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 63
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 3 cut(s) 5, 61, 79
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 3 cut(s) 5, 61, 79
Bsp120I GGGCCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 220, 226
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 4 cut(s) 57, 80, 94, 311
BspANI GGCC 3 cut(s) 5, 61, 79
BspLI GGNNCC 3 cut(s) 61, 188, 353
BspQI GCTCTTC 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 220, 226
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 38, 145
BstBAI YACGTR 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 179
BstKTI GATC 2 cut(s) 223, 229
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 220, 226
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 63
BstSNI TACGTA 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 3 cut(s) 5, 61, 79
BtgI CCRYGG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 298, 349
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 4 cut(s) 59, 60, 176, 352
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 3 cut(s) 180, 254, 319
CviJI RGCY 6 cut(s) 5, 61, 79, 155, 251, 413
CviKI_1 RGCY 6 cut(s) 5, 61, 79, 155, 251, 413
DpnI GATC 2 cut(s) 222, 228
DpnII GATC 2 cut(s) 220, 226
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 38, 145
EarI CTCTTC 2 cut(s) 38, 145
Eco105I TACGTA 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 176, 352
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 3 cut(s) 183, 257, 322
FaiI YATR 7 cut(s) 181, 255, 320, 335, 422, 424, 426
FatI CATG 3 cut(s) 179, 253, 318
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 80, 289
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 80, 289
FspBI CTAG 2 cut(s) 248, 448
GluI GCNGC 2 cut(s) 80, 289
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 3 cut(s) 5, 61, 79
Hin1II CATG 3 cut(s) 183, 257, 322
HinfI GANTC 2 cut(s) 8, 68
HphI GGTGA 2 cut(s) 286, 325
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 73, 109, 373
Hpy188III TCNNGA 2 cut(s) 211, 224
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 4 cut(s) 232, 271, 275, 368
HpyCH4IV ACGT 2 cut(s) 325, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 325, 428
Hsp92II CATG 3 cut(s) 183, 257, 322
Kzo9I GATC 2 cut(s) 220, 226
LguI GCTCTTC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 176, 203, 224
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 415, 434
MaeI CTAG 2 cut(s) 248, 448
MaeII ACGT 2 cut(s) 325, 428
MaeIII GTNAC 1 cut(s) 321
MalI GATC 2 cut(s) 222, 228
MbiI CCGCTC 1 cut(s) 57
MboI GATC 2 cut(s) 220, 226
MboII GAAGA 5 cut(s) 43, 52, 55, 162, 221
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 3 cut(s) 100, 198, 330
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 177, 264, 278, 292
MseI TTAA 3 cut(s) 197, 329, 440
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 58
NcoI CCATGG 1 cut(s) 179
NdeII GATC 2 cut(s) 220, 226
NlaIII CATG 3 cut(s) 183, 257, 322
NlaIV GGNNCC 3 cut(s) 61, 188, 353
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 322
PciI ACATGT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 8, 68
PkrI GCNGC 2 cut(s) 81, 290
Ppu21I YACGTR 1 cut(s) 429
PscI ACATGT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 61, 188, 353
PspOMI GGGCCC 1 cut(s) 59
PspPI GGNCC 4 cut(s) 59, 60, 176, 352
PsuI RGATCY 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 145
SaqAI TTAA 3 cut(s) 197, 329, 440
SatI GCNGC 2 cut(s) 80, 289
Sau3AI GATC 2 cut(s) 220, 226
Sau96I GGNCC 4 cut(s) 59, 60, 176, 352
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 63
SetI ASST 8 cut(s) 157, 175, 192, 243, 253, 328, 415, 431
SfaNI GCATC 2 cut(s) 415, 434
SinI GGWCC 2 cut(s) 176, 352
SnaBI TACGTA 1 cut(s) 429
Sse9I AATT 3 cut(s) 100, 198, 330
SsiI CCGC 4 cut(s) 57, 80, 94, 311
SspMI CTAG 2 cut(s) 248, 448
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 179
TaiI ACGT 2 cut(s) 328, 431
TaqI TCGA 1 cut(s) 269
TasI AATT 3 cut(s) 100, 198, 330
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 2 cut(s) 8, 68
Tru1I TTAA 3 cut(s) 197, 329, 440
Tru9I TTAA 3 cut(s) 197, 329, 440
TscAI CASTG 2 cut(s) 298, 349
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 3 cut(s) 81, 93, 135
TspRI CASTG 2 cut(s) 298, 349
VpaK11BI GGWCC 2 cut(s) 176, 352
XceI RCATGY 1 cut(s) 322
XspI CTAG 2 cut(s) 248, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.