Rh6AG029400

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3602022 .. 3602621
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG029400.1

Sequence Viewer

Length: 600 bp
ATGGTTGCTGGGCTTCAAGAATCATTCTTCAAAGATATTTATCATCAAGTTCATGATATGATCTTGGAGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCCAATCATGCTGTTCGTTTCCTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTTGTCCAATTATATTGAAGCCTGGAAAAGTGTAAACGTTGTTGCTAATATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATCTGTAATGGAGAAGAGGAAGTTTCTATTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTAGCATGCGTTGTGATCAACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCCAACTCAACCTCTGTATAAAGGTTTTTGAAGAAATTTCTAGTCTTCTTCTACAAATGTTTATTCTTGACGATAATCAGCAGTCCACAACTATATGTCATGCCTATAATCTTCAGAAGTCAGGCTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

199

Amino Acids

22.75

Weight (kDa)

5.19

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 231
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 4 cut(s) 157, 193, 331, 501
AcuI CTGAAG 1 cut(s) 563
AgsI TTSAA 8 cut(s) 17, 31, 193, 212, 250, 337, 458, 497
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 2 cut(s) 154, 434
AluI AGCT 2 cut(s) 154, 434
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 4 cut(s) 157, 193, 331, 501
AspS9I GGNCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 172
BarI GAAGNNNNNNTAC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 503
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 217
BclI TGATCA 1 cut(s) 399
BfaI CTAG 2 cut(s) 386, 507
BglII AGATCT 1 cut(s) 264
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 3 cut(s) 249, 300, 313
BpiI GAAGAC 1 cut(s) 503
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 161
BsaBI GATNNNNATC 2 cut(s) 39, 263
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bse8I GATNNNNATC 2 cut(s) 39, 263
BseBI CCWGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 170
BseJI GATNNNNATC 2 cut(s) 39, 263
BseMII CTCAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 8
BshFI GGCC 1 cut(s) 384
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 4 cut(s) 60, 76, 264, 399
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 1 cut(s) 84
BssMI GATC 4 cut(s) 60, 76, 264, 399
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 2 cut(s) 150, 435
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 4 cut(s) 63, 79, 267, 402
BstMBI GATC 4 cut(s) 60, 76, 264, 399
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 1 cut(s) 384
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 391
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 382
CviAII CATG 4 cut(s) 53, 125, 390, 566
CviJI RGCY 6 cut(s) 13, 154, 215, 384, 434, 591
CviKI_1 RGCY 6 cut(s) 13, 154, 215, 384, 434, 591
DdeI CTNAG 2 cut(s) 150, 435
DpnI GATC 4 cut(s) 62, 78, 266, 401
DpnII GATC 4 cut(s) 60, 76, 264, 399
DraI TTTAAA 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 215
FaeI CATG 4 cut(s) 56, 128, 393, 569
FatI CATG 4 cut(s) 52, 124, 389, 565
FbaI TGATCA 1 cut(s) 399
FokI GGATG 1 cut(s) 177
FspBI CTAG 2 cut(s) 386, 507
GsaI CCCAGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 384
Hin1II CATG 4 cut(s) 56, 128, 393, 569
HinfI GANTC 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 229, 552
Hpy188I TCNGA 2 cut(s) 99, 582
Hpy188III TCNNGA 3 cut(s) 17, 53, 533
Hpy8I GTNNAC 2 cut(s) 229, 552
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 2 cut(s) 150, 435
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 56, 128, 393, 569
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 4 cut(s) 60, 76, 264, 399
LpnPI CCDG 3 cut(s) 202, 229, 573
LweI GCATC 3 cut(s) 249, 300, 313
MaeI CTAG 2 cut(s) 386, 507
MaeII ACGT 1 cut(s) 231
MalI GATC 4 cut(s) 62, 78, 266, 401
MboI GATC 4 cut(s) 60, 76, 264, 399
MboII GAAGA 7 cut(s) 19, 295, 317, 503, 506, 509, 569
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 7 cut(s) 157, 193, 202, 331, 354, 501, 595
MnlI CCTC 3 cut(s) 136, 301, 488
MseI TTAA 4 cut(s) 71, 104, 329, 598
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 4 cut(s) 60, 76, 264, 399
NlaIII CATG 4 cut(s) 56, 128, 393, 569
NlaIV GGNNCC 1 cut(s) 383
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PagI TCATGA 1 cut(s) 52
PfeI GAWTC 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 264
SaqAI TTAA 4 cut(s) 71, 104, 329, 598
Sau3AI GATC 4 cut(s) 60, 76, 264, 399
Sau96I GGNCC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 1 cut(s) 172
SetI ASST 7 cut(s) 147, 156, 234, 436, 449, 480, 492
SfaNI GCATC 3 cut(s) 249, 300, 313
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 393
Sse9I AATT 7 cut(s) 157, 193, 202, 331, 354, 501, 595
SspI AATATT 1 cut(s) 244
SspMI CTAG 2 cut(s) 386, 507
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 234
TasI AATT 7 cut(s) 157, 193, 202, 331, 354, 501, 595
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 4 cut(s) 71, 104, 329, 598
Tru9I TTAA 4 cut(s) 71, 104, 329, 598
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 4 cut(s) 157, 193, 331, 501
XceI RCATGY 1 cut(s) 393
XspI CTAG 2 cut(s) 386, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.