RchiOBHm_Chr6g0245351

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
1183297 .. 1184203
907 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21990

Sequence Viewer

Length: 714 bp
ATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAATGTTTACGATGTCGTCTGACAGTCATATTGTTGGAAAACATTACTGCTCAACTATTTTCAATCCAGAAACACGAAAGTCGCTTCACTATTTTTTTGTACTGATTATGAAGCCTCTTTTGCTTGAGATAAATGGCTTTCTTGAAACTAAGCTGAAAGTGGTCCCTGAATTAATGGATGTTCATTGCACACTTAAAGCTATAAATAATGTACTTTCGGTCTTTATGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAAGGTTTATAATACCATCATCTCATTGTCCTCTGATTTAATTCAGTTGTCAGTTACACACTCAGATAGTTTTACTGTAATAGCAAATGAGGTACTTTCTGCTGTAGGCTATCTTTTTGAAATTGAATATGATGTTCTAGAGAATGATCTGGTAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCATTGGGGTTTCTTTGGTGGATTCTCCAGATAGATGCTCATTATTCTCCAAGATAACAGATATTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGATTAGTAGAATGCTCTTTGATCAAGCATTTTCCAGCTTTTTAACTGCATGCCAAAAATTGTACATCACTACCCACAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

237

Amino Acids

26.87

Weight (kDa)

5.45

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 525
AfaI GTAC 4 cut(s) 153, 264, 435, 692
AgsI TTSAA 6 cut(s) 24, 115, 197, 340, 461, 467
AluBI AGCT 5 cut(s) 205, 251, 323, 498, 666
AluI AGCT 5 cut(s) 205, 251, 323, 498, 666
AoxI GGCC 1 cut(s) 525
AseI ATTAAT 2 cut(s) 224, 602
AspS9I GGNCC 1 cut(s) 214
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 527
BccI CCATC 1 cut(s) 365
BclI TGATCA 1 cut(s) 649
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 2 cut(s) 444, 613
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 4 cut(s) 298, 501, 551, 584
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 235
BseGI GGATG 3 cut(s) 235, 313, 599
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 306, 417
BshFI GGCC 1 cut(s) 527
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 645
BsnI GGCC 1 cut(s) 527
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 2 cut(s) 487, 649
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 2 cut(s) 307, 416
BspLI GGNNCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 690
BssMI GATC 2 cut(s) 487, 649
Bst4CI ACNGT 2 cut(s) 77, 418
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 3 cut(s) 201, 315, 403
BstF5I GGATG 3 cut(s) 235, 313, 599
BstKTI GATC 2 cut(s) 490, 652
BstMBI GATC 2 cut(s) 487, 649
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 681
BstSFI CTRYAG 2 cut(s) 444, 613
BsuRI GGCC 1 cut(s) 527
BtsCI GGATG 3 cut(s) 235, 313, 599
Cac8I GCNNGC 1 cut(s) 679
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 4 cut(s) 152, 263, 434, 691
CviAII CATG 2 cut(s) 281, 678
CviJI RGCY 9 cut(s) 166, 189, 205, 251, 323, 450, 498, 527, 666
CviKI_1 RGCY 9 cut(s) 166, 189, 205, 251, 323, 450, 498, 527, 666
CviQI GTAC 4 cut(s) 152, 263, 434, 691
DdeI CTNAG 3 cut(s) 201, 315, 403
DpnI GATC 2 cut(s) 489, 651
DpnII GATC 2 cut(s) 487, 649
EaeI YGGCCR 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 282
FaeI CATG 2 cut(s) 284, 681
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 280, 677
FbaI TGATCA 1 cut(s) 649
FokI GGATG 3 cut(s) 242, 320, 606
FspBI CTAG 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 1 cut(s) 527
Hin1II CATG 2 cut(s) 284, 681
HincII GTYRAC 1 cut(s) 620
HindII GTYRAC 1 cut(s) 620
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 1 cut(s) 548
Hpy166II GTNNAC 2 cut(s) 60, 620
Hpy188I TCNGA 4 cut(s) 73, 316, 376, 406
Hpy188III TCNNGA 5 cut(s) 119, 194, 337, 479, 554
Hpy8I GTNNAC 2 cut(s) 60, 620
HpyAV CCTTC 2 cut(s) 11, 337
HpyCH4III ACNGT 2 cut(s) 77, 418
HpyCH4V TGCA 3 cut(s) 240, 280, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 3 cut(s) 201, 315, 403
Hsp92II CATG 2 cut(s) 284, 681
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 2 cut(s) 487, 649
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 6 cut(s) 132, 231, 476, 567, 641, 676
LweI GCATC 4 cut(s) 298, 501, 551, 584
MaeI CTAG 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 394
MalI GATC 2 cut(s) 489, 651
MboI GATC 2 cut(s) 487, 649
MboII GAAGA 2 cut(s) 47, 352
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 7 cut(s) 221, 331, 381, 462, 599, 603, 686
MluNI TGGCCA 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 6 cut(s) 177, 298, 310, 322, 382, 424
Mox20I TGGCCA 1 cut(s) 527
Mph1103I ATGCAT 1 cut(s) 282
MscI TGGCCA 1 cut(s) 527
MseI TTAA 7 cut(s) 224, 246, 330, 380, 506, 602, 671
Msp20I TGGCCA 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 2 cut(s) 487, 649
NlaIII CATG 2 cut(s) 284, 681
NlaIV GGNNCC 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 681
PaeI GCATGC 1 cut(s) 681
PctI GAATGC 1 cut(s) 645
PfeI GAWTC 1 cut(s) 548
PshBI ATTAAT 2 cut(s) 224, 602
PsiI TTATAA 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 214
RsaI GTAC 4 cut(s) 153, 264, 435, 692
RsaNI GTAC 4 cut(s) 152, 263, 434, 691
SaqAI TTAA 7 cut(s) 224, 246, 330, 380, 506, 602, 671
Sau3AI GATC 2 cut(s) 487, 649
Sau96I GGNCC 1 cut(s) 214
SetI ASST 8 cut(s) 22, 207, 253, 325, 348, 435, 500, 668
SfaNI GCATC 4 cut(s) 298, 501, 551, 584
SfcI CTRYAG 2 cut(s) 444, 613
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SphI GCATGC 1 cut(s) 681
Sse9I AATT 7 cut(s) 221, 331, 381, 462, 599, 603, 686
SspMI CTAG 1 cut(s) 479
TaaI ACNGT 2 cut(s) 77, 418
TaqII GACCGA 1 cut(s) 259
TasI AATT 7 cut(s) 221, 331, 381, 462, 599, 603, 686
TatI WGTACW 3 cut(s) 151, 262, 690
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 7 cut(s) 224, 246, 330, 380, 506, 602, 671
Tru9I TTAA 7 cut(s) 224, 246, 330, 380, 506, 602, 671
TspDTI ATGAA 4 cut(s) 33, 176, 224, 297
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 2 cut(s) 224, 602
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 681
XspI CTAG 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.