RchiOBHm_Chr6g0245521

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
1299062 .. 1304406
5345 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22003

Sequence Viewer

Length: 2223 bp
ATGGTTGCTGGGCTTCAAGAATCATTCTCAAAAGATATTTATCATAAAGTTCATGATATGATCTTGGCGTTAATGGGTCACACATTTTTTGTGTTTCTGACATTACATAAATATCAATCCAATCATGCTGTTCGTTTCTTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTGTTGAATTCGTCCATTTATATTGGAGCCTGGAAAAGTGCAAACATTGTTGCTAACATTTTAAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAAATAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTAGCATGTGTTGTGATTGACACAGATGGGAGAAATAGTGATGAGAAGGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCGAACTCAACCTCTGTATAAAGATTTTGCTGGAGGGCAATGATGCTGACACTGATATGGCATGTGGTGGACTGCAGGATGAATCTGCAGTTGCAGTGACGTGCCCAGCATCATCTGACATCTGTGATGACTCTGTAATTGGTAGTGTTCATAGAAGAAGACCGCGCTCTAAAGATGCAAATAGTGTTGTTAGTGTTCTTACTGCTGTTGATTCATTTGAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATTCTAAAAGGTGATTTCCCCAACACAGCATTTTTACTCAGGCAGTTGTTAATCGCCTCTGCTGCTATTTTGAGGCTAAATTTGCATATTAAGAGCGCTCCCATGTTGTCAAGCTTGGTGAATAAGTTTGCTGGCATTATGCAAGTCTTGTTATTGGAATCAGCGGACGCAAGTCAGGTGCCGCACTTCTATTATTTTGTGTGTTTAGATGGTGTTCTGAAGTATCTGGAAGAATTAGGGAATCATTTTCCTTTGACTAATCCTACCTTATCCGGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTTTAGGGAAATGCATAACTTTACAAGGGAAGAGAGCAGCTCTTGCATCTCATGAAACAAACACCAACACATGCTTAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTCGCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGTTATCGAAAGAGCCCTAGTTGGTGTGCGAGAAGGGTGCACAGTGAGGTATGACATCTGTGCTGGATGTGAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGGACGCAATTTGATTGTGGTTAAAAAATACATTCAGAGGTTAATTGCCTGCATGTTCAATGTTATTCTGCATCTGCAGAGTCCGCTAATCTTCTATGAGAGATTCACTCAGAGTAAAGATGATAGTGATCCAGATCCAGGAATAGTCATTCTTATGTGTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTACGTATACCTTCAGCACTTTTTCAAGATTTCCATCTGTTAAAACATTCTAAATGTCGTGTTCCAAATGATTCTTCAACAAGTCCGAATAACCAACCATGCAACCCAGTAGCTAGTGTACGTGTCTCTGGTATAGATAGGCAATACTCAATCGGCCTATACTCTGCTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGTGAATGGTATGTTCTTCTTTATTGTTTGGAGACATTGGATGCTGTTGTGGTAGCCAGGGAAGGCTTTTTTTCATGGGAAGTAGAAGGAGTCAAATGTGCATGTTCTCTCAGAAGGATTTATGAAGAGCTAAGACATCAAAAAGTGGTCTTTGGTCAACACTGGTACCACTTTTTAGCTTATTACATACGGGTTTATTCAGGATATGGCCCCCGCAAAACAGGCATCAAAAGGGAAATAGATGAAGCTCTAAGACCAGGTGTATATGCGCTGATAGATGTTTGCTCACCTGATGATCTTCAACGTCTTCATACCTCATTTGGAGAGGGTCCTTGCAGAAACACCTTGGCGACCTTGAAGCACGATTATGAACTCAATTTCCAGTACCAGGGAAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

740

Amino Acids

82.94

Weight (kDa)

7.5

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 513 - 739 7.7e-29 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1986
AccB1I GGYRCC 2 cut(s) 889, 1986
AccI GTMKAC 1 cut(s) 1621
AccII CGCG 1 cut(s) 622
AccIII TCCGGA 1 cut(s) 983
AciI CCGC 5 cut(s) 620, 875, 893, 1466, 2035
AclWI GGATC 3 cut(s) 1505, 1511, 1599
AcsI RAATTY 7 cut(s) 157, 193, 331, 790, 1160, 1373, 1560
AcuI CTGAAG 3 cut(s) 950, 1140, 1611
AfaI GTAC 4 cut(s) 1551, 1734, 1988, 2207
AfeI AGCGCT 1 cut(s) 808
AfiI CCNNNNNNNGG 2 cut(s) 1520, 2209
AflIII ACRYGT 1 cut(s) 1735
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 5 cut(s) 215, 1519, 1877, 2077, 2208
AjuI GAANNNNNNNTTGG 4 cut(s) 1218, 1250, 1672, 1704
AleI CACNNNNGTG 1 cut(s) 1821
AloI GAACNNNNNNTCC 2 cut(s) 2184, 2216
AluBI AGCT 9 cut(s) 154, 825, 1012, 1064, 1169, 1727, 1951, 2000, 2069
AluI AGCT 9 cut(s) 154, 825, 1012, 1064, 1169, 1727, 1951, 2000, 2069
Alw21I GWGCWC 1 cut(s) 1280
Alw26I GTCTC 2 cut(s) 1744, 1847
Alw44I GTGCAC 1 cut(s) 1276
AlwI GGATC 3 cut(s) 1505, 1511, 1599
Aor13HI TCCGGA 1 cut(s) 983
Aor51HI AGCGCT 1 cut(s) 808
AoxI GGCC 3 cut(s) 373, 1768, 2029
ApaLI GTGCAC 1 cut(s) 1276
ApeKI GCWGC 3 cut(s) 773, 1061, 1785
ApoI RAATTY 7 cut(s) 157, 193, 331, 790, 1160, 1373, 1560
Asp700I GAANNNNTTC 1 cut(s) 1324
Asp718I GGTACC 1 cut(s) 1986
AspLEI GCGC 3 cut(s) 624, 809, 2092
AspS9I GGNCC 3 cut(s) 373, 2030, 2150
AsuHPI GGTGA 3 cut(s) 734, 841, 2100
AvaII GGWCC 1 cut(s) 2150
BaeGI GKGCMC 3 cut(s) 172, 563, 1280
BaeI ACNNNNGTAYC 2 cut(s) 1970, 2003
BanI GGYRCC 2 cut(s) 889, 1986
BanII GRGCYC 1 cut(s) 1255
BbsI GAAGAC 2 cut(s) 622, 2120
Bbv12I GWGCWC 1 cut(s) 1280
BbvI GCAGC 3 cut(s) 760, 1073, 1772
BccI CCATC 5 cut(s) 395, 914, 997, 1307, 1656
BcgI CGANNNNNNTGC 2 cut(s) 1257, 1291
BciT130I CCWGG 5 cut(s) 217, 1521, 1879, 2079, 2210
BcoDI GTCTC 2 cut(s) 1744, 1847
BfaI CTAG 4 cut(s) 377, 1170, 1256, 1728
BfmI CTRYAG 5 cut(s) 530, 543, 1013, 1230, 1457
BfoI RGCGCY 1 cut(s) 810
BglII AGATCT 1 cut(s) 264
BisI GCNGC 4 cut(s) 774, 893, 1062, 1786
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 4 cut(s) 775, 894, 1063, 1787
Bme1390I CCNGG 5 cut(s) 217, 1521, 1879, 2079, 2210
Bme18I GGWCC 1 cut(s) 2150
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 3 cut(s) 373, 2030, 2150
BmiI GGNNCC 6 cut(s) 214, 374, 891, 1988, 2032, 2151
BmrFI CCNGG 5 cut(s) 217, 1521, 1879, 2079, 2210
BmrI ACTGGG 1 cut(s) 1715
BmuI ACTGGG 1 cut(s) 1715
BoxI GACNNNNGTC 1 cut(s) 882
BpiI GAAGAC 2 cut(s) 622, 2120
BplI GAGNNNNNCTC 4 cut(s) 1048, 1080, 1474, 1506
BpmI CTGGAG 1 cut(s) 509
Bpu10I CCTNAGC 1 cut(s) 1099
Bpu1102I GCTNAGC 1 cut(s) 150
BsaAI YACGTR 2 cut(s) 1619, 1736
BsaBI GATNNNNATC 5 cut(s) 39, 263, 1509, 1515, 1647
BsaJI CCNNGG 3 cut(s) 1878, 2166, 2209
BsaWI WCCGGW 1 cut(s) 983
BsaXI ACNNNNNCTCC 4 cut(s) 397, 427, 1308, 1338
Bsc4I CCNNNNNNNGG 2 cut(s) 1520, 2209
Bse1I ACTGG 4 cut(s) 1557, 1721, 1988, 2203
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 5 cut(s) 39, 263, 1509, 1515, 1647
BseAI TCCGGA 1 cut(s) 983
BseBI CCWGG 5 cut(s) 217, 1521, 1879, 2079, 2210
BseDI CCNNGG 3 cut(s) 1878, 2166, 2209
BseGI GGATG 5 cut(s) 170, 541, 1162, 1310, 1867
BseJI GATNNNNATC 5 cut(s) 39, 263, 1509, 1515, 1647
BseLI CCNNNNNNNGG 2 cut(s) 1520, 2209
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 4 cut(s) 141, 763, 1505, 1945
BseNI ACTGG 4 cut(s) 1557, 1721, 1988, 2203
BseSI GKGCMC 3 cut(s) 172, 563, 1280
BseXI GCAGC 3 cut(s) 760, 1073, 1772
BseYI CCCAGC 3 cut(s) 8, 562, 1140
Bsh1236I CGCG 1 cut(s) 622
BshFI GGCC 3 cut(s) 375, 1770, 2031
BshNI GGYRCC 2 cut(s) 889, 1986
BsiHKAI GWGCWC 1 cut(s) 1280
BsiSI CCGG 1 cut(s) 984
BslI CCNNNNNNNGG 2 cut(s) 1520, 2209
BsmAI GTCTC 2 cut(s) 1744, 1847
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 3 cut(s) 375, 1770, 2031
Bsp1286I GDGCHC 4 cut(s) 172, 563, 1255, 1280
Bsp13I TCCGGA 1 cut(s) 983
Bsp143I GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 5 cut(s) 620, 875, 893, 1466, 2035
BspANI GGCC 3 cut(s) 375, 1770, 2031
BspCNI CTCAG 4 cut(s) 142, 762, 1504, 1944
BspEI TCCGGA 1 cut(s) 983
BspFNI CGCG 1 cut(s) 622
BspHI TCATGA 2 cut(s) 52, 1075
BspLI GGNNCC 6 cut(s) 214, 374, 891, 1988, 2032, 2151
BspMAI CTGCAG 4 cut(s) 534, 547, 1234, 1461
BspPI GGATC 3 cut(s) 1505, 1511, 1599
BspQI GCTCTTC 1 cut(s) 1941
BspT107I GGYRCC 2 cut(s) 889, 1986
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 4 cut(s) 1557, 1721, 1988, 2203
BssECI CCNNGG 3 cut(s) 1878, 2166, 2209
BssMI GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
BssNAI GTATAC 1 cut(s) 1622
BssT1I CCWWGG 1 cut(s) 2166
Bst1107I GTATAC 1 cut(s) 1622
Bst2UI CCWGG 5 cut(s) 217, 1521, 1879, 2079, 2210
Bst4CI ACNGT 2 cut(s) 1017, 1282
Bst6I CTCTTC 2 cut(s) 1049, 1941
BstAPI GCANNNNNTGC 2 cut(s) 1067, 1353
BstBAI YACGTR 2 cut(s) 1619, 1736
BstC8I GCNNGC 5 cut(s) 844, 1432, 1571, 1575, 1783
BstDEI CTNAG 8 cut(s) 150, 426, 749, 1099, 1491, 1931, 1952, 2072
BstF5I GGATG 5 cut(s) 170, 541, 1162, 1310, 1867
BstFNI CGCG 1 cut(s) 622
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 3 cut(s) 624, 809, 2092
BstKTI GATC 6 cut(s) 63, 267, 1513, 1519, 1594, 2119
BstMAI GTCTC 2 cut(s) 1744, 1847
BstMBI GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
BstMWI GCNNNNNNNGC 6 cut(s) 773, 793, 1067, 1353, 1465, 2043
BstNI CCWGG 5 cut(s) 217, 1521, 1879, 2079, 2210
BstNSI RCATGY 7 cut(s) 384, 522, 1098, 1438, 1577, 1604, 1926
BstPAI GACNNNNGTC 1 cut(s) 882
BstSCI CCNGG 5 cut(s) 215, 1519, 1877, 2077, 2208
BstSFI CTRYAG 5 cut(s) 530, 543, 1013, 1230, 1457
BstSLI GKGCMC 3 cut(s) 172, 563, 1280
BstSNI TACGTA 1 cut(s) 1619
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 3 cut(s) 760, 1073, 1772
BstV2I GAAGAC 2 cut(s) 622, 2120
BstX2I RGATCY 3 cut(s) 264, 1516, 1591
BstYI RGATCY 3 cut(s) 264, 1516, 1591
BstZ17I GTATAC 1 cut(s) 1622
BsuRI GGCC 3 cut(s) 375, 1770, 2031
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 5 cut(s) 170, 541, 1162, 1310, 1867
BtsI GCAGTG 2 cut(s) 558, 1197
BtsIMutI CAGTG 5 cut(s) 507, 558, 1197, 1287, 1981
Cac8I GCNNGC 5 cut(s) 844, 1432, 1571, 1575, 1783
CciI TCATGA 2 cut(s) 52, 1075
CfoI GCGC 3 cut(s) 624, 809, 2092
Cfr13I GGNCC 3 cut(s) 373, 2030, 2150
CseI GACGC 2 cut(s) 887, 1395
CsiI ACCWGGT 1 cut(s) 2077
Csp6I GTAC 4 cut(s) 1550, 1733, 1987, 2206
CviQI GTAC 4 cut(s) 1550, 1733, 1987, 2206
DdeI CTNAG 8 cut(s) 150, 426, 749, 1099, 1491, 1931, 1952, 2072
DpnI GATC 6 cut(s) 62, 266, 1512, 1518, 1593, 2118
DpnII GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
DraI TTTAAA 3 cut(s) 249, 330, 690
Eam1104I CTCTTC 2 cut(s) 1049, 1941
EarI CTCTTC 2 cut(s) 1049, 1941
Eco105I TACGTA 1 cut(s) 1619
Eco130I CCWWGG 1 cut(s) 2166
Eco24I GRGCYC 1 cut(s) 1255
Eco47I GGWCC 1 cut(s) 2150
Eco47III AGCGCT 1 cut(s) 808
Eco57I CTGAAG 3 cut(s) 950, 1140, 1611
EcoO109I RGGNCCY 2 cut(s) 373, 2150
EcoRI GAATTC 2 cut(s) 193, 1160
EcoRII CCWGG 5 cut(s) 215, 1519, 1877, 2077, 2208
EcoT14I CCWWGG 1 cut(s) 2166
EcoT22I ATGCAT 1 cut(s) 1040
EcoT38I GRGCYC 1 cut(s) 1255
ErhI CCWWGG 1 cut(s) 2166
FauI CCCGC 1 cut(s) 2042
FblI GTMKAC 1 cut(s) 1621
Fnu4HI GCNGC 4 cut(s) 774, 893, 1062, 1786
FokI GGATG 5 cut(s) 177, 548, 1169, 1317, 1874
FriOI GRGCYC 1 cut(s) 1255
Fsp4HI GCNGC 4 cut(s) 774, 893, 1062, 1786
FspBI CTAG 4 cut(s) 377, 1170, 1256, 1728
GlaI GCGC 3 cut(s) 623, 808, 2091
GluI GCNGC 4 cut(s) 774, 893, 1062, 1786
GsaI CCCAGC 3 cut(s) 12, 566, 1144
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 1 cut(s) 810
HaeIII GGCC 3 cut(s) 375, 1770, 2031
HapII CCGG 1 cut(s) 984
HgaI GACGC 2 cut(s) 887, 1395
HhaI GCGC 3 cut(s) 624, 809, 2092
Hin6I GCGC 3 cut(s) 622, 807, 2090
HinP1I GCGC 3 cut(s) 622, 807, 2090
HincII GTYRAC 2 cut(s) 1546, 1979
HindII GTYRAC 2 cut(s) 1546, 1979
HindIII AAGCTT 1 cut(s) 823
HpaII CCGG 1 cut(s) 984
HphI GGTGA 3 cut(s) 734, 841, 2100
Hpy166II GTNNAC 6 cut(s) 527, 1278, 1546, 1622, 1733, 1979
Hpy188I TCNGA 9 cut(s) 99, 460, 574, 930, 1120, 1419, 1494, 1701, 1934
Hpy8I GTNNAC 6 cut(s) 527, 1278, 1546, 1622, 1733, 1979
HpyAV CCTTC 6 cut(s) 415, 1265, 1635, 1877, 1901, 1929
HpyCH4III ACNGT 2 cut(s) 1017, 1282
HpyCH4IV ACGT 5 cut(s) 557, 1548, 1618, 1735, 2125
HpyF10VI GCNNNNNNNGC 6 cut(s) 773, 793, 1067, 1353, 1465, 2043
HpyF3I CTNAG 8 cut(s) 150, 426, 749, 1099, 1491, 1931, 1952, 2072
HpySE526I ACGT 5 cut(s) 557, 1548, 1618, 1735, 2125
HspAI GCGC 3 cut(s) 622, 807, 2090
Kpn2I TCCGGA 1 cut(s) 983
KpnI GGTACC 1 cut(s) 1990
Kzo9I GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
LguI GCTCTTC 1 cut(s) 1941
LmnI GCTCC 2 cut(s) 212, 814
Lsp1109I GCAGC 3 cut(s) 760, 1073, 1772
MabI ACCWGGT 1 cut(s) 2077
MaeI CTAG 4 cut(s) 377, 1170, 1256, 1728
MaeII ACGT 5 cut(s) 557, 1548, 1618, 1735, 2125
MaeIII GTNAC 4 cut(s) 77, 553, 1017, 1614
MalI GATC 6 cut(s) 62, 266, 1512, 1518, 1593, 2118
MboI GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
MfeI CAATTG 1 cut(s) 1332
MflI RGATCY 3 cut(s) 264, 1516, 1591
MhlI GDGCHC 4 cut(s) 172, 563, 1255, 1280
MlyI GAGTC 3 cut(s) 581, 1471, 1920
Mph1103I ATGCAT 1 cut(s) 1040
MroI TCCGGA 1 cut(s) 983
MroXI GAANNNNTTC 1 cut(s) 1324
MseI TTAA 9 cut(s) 71, 248, 329, 689, 761, 801, 1404, 1424, 1655
MslI CAYNNNNRTG 4 cut(s) 512, 1535, 1821, 2187
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 1 cut(s) 984
MspR9I CCNGG 5 cut(s) 217, 1521, 1879, 2079, 2210
MunI CAATTG 1 cut(s) 1332
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 5 cut(s) 217, 1521, 1879, 2079, 2210
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 6 cut(s) 773, 793, 1067, 1353, 1465, 2043
NdeII GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
NlaIV GGNNCC 6 cut(s) 214, 374, 891, 1988, 2032, 2151
NmuCI GTSAC 2 cut(s) 77, 553
NsiI ATGCAT 1 cut(s) 1040
NspI RCATGY 7 cut(s) 384, 522, 1098, 1438, 1577, 1604, 1926
OliI CACNNNNGTG 1 cut(s) 1821
PaeI GCATGC 1 cut(s) 1577
PagI TCATGA 2 cut(s) 52, 1075
PciSI GCTCTTC 1 cut(s) 1941
PctI GAATGC 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 1324
PfeI GAWTC 7 cut(s) 20, 539, 668, 869, 952, 1485, 1685
PfoI TCCNGGA 1 cut(s) 1519
PkrI GCNGC 4 cut(s) 775, 894, 1063, 1787
PleI GAGTC 3 cut(s) 581, 1470, 1919
PpsI GAGTC 3 cut(s) 581, 1470, 1919
Ppu21I YACGTR 2 cut(s) 1619, 1736
PpuMI RGGWCCY 1 cut(s) 2150
PshAI GACNNNNGTC 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 2150
Psp6I CCWGG 5 cut(s) 215, 1519, 1877, 2077, 2208
PspFI CCCAGC 3 cut(s) 8, 562, 1140
PspGI CCWGG 5 cut(s) 215, 1519, 1877, 2077, 2208
PspN4I GGNNCC 6 cut(s) 214, 374, 891, 1988, 2032, 2151
PspPI GGNCC 3 cut(s) 373, 2030, 2150
PspPPI RGGWCCY 1 cut(s) 2150
PstI CTGCAG 4 cut(s) 534, 547, 1234, 1461
PsuI RGATCY 3 cut(s) 264, 1516, 1591
RsaI GTAC 4 cut(s) 1551, 1734, 1988, 2207
RsaNI GTAC 4 cut(s) 1550, 1733, 1987, 2206
RseI CAYNNNNRTG 4 cut(s) 512, 1535, 1821, 2187
SapI GCTCTTC 1 cut(s) 1941
SaqAI TTAA 9 cut(s) 71, 248, 329, 689, 761, 801, 1404, 1424, 1655
SatI GCNGC 4 cut(s) 774, 893, 1062, 1786
Sau3AI GATC 6 cut(s) 60, 264, 1510, 1516, 1591, 2116
Sau96I GGNCC 3 cut(s) 373, 2030, 2150
SchI GAGTC 3 cut(s) 581, 1471, 1920
ScrFI CCNGG 5 cut(s) 217, 1521, 1879, 2079, 2210
SduI GDGCHC 4 cut(s) 172, 563, 1255, 1280
SexAI ACCWGGT 1 cut(s) 2077
SfcI CTRYAG 5 cut(s) 530, 543, 1013, 1230, 1457
SinI GGWCC 1 cut(s) 2150
SmiMI CAYNNNNRTG 4 cut(s) 512, 1535, 1821, 2187
SnaBI TACGTA 1 cut(s) 1619
SphI GCATGC 1 cut(s) 1577
SsiI CCGC 5 cut(s) 620, 875, 893, 1466, 2035
SspI AATATT 1 cut(s) 1148
SspMI CTAG 4 cut(s) 377, 1170, 1256, 1728
StyD4I CCNGG 5 cut(s) 215, 1519, 1877, 2077, 2208
StyI CCWWGG 1 cut(s) 2166
TaaI ACNGT 2 cut(s) 1017, 1282
TaiI ACGT 5 cut(s) 560, 1551, 1621, 1738, 2128
TaqI TCGA 1 cut(s) 1245
TauI GCSGC 1 cut(s) 895
TfiI GAWTC 7 cut(s) 20, 539, 668, 869, 952, 1485, 1685
Tru1I TTAA 9 cut(s) 71, 248, 329, 689, 761, 801, 1404, 1424, 1655
Tru9I TTAA 9 cut(s) 71, 248, 329, 689, 761, 801, 1404, 1424, 1655
TscAI CASTG 5 cut(s) 514, 558, 1197, 1287, 1988
TseFI GTSAC 2 cut(s) 77, 553
TseI GCWGC 3 cut(s) 773, 1061, 1785
Tsp45I GTSAC 2 cut(s) 77, 553
TspRI CASTG 5 cut(s) 514, 558, 1197, 1287, 1988
VneI GTGCAC 1 cut(s) 1276
VpaK11BI GGWCC 1 cut(s) 2150
XapI RAATTY 7 cut(s) 157, 193, 331, 790, 1160, 1373, 1560
XceI RCATGY 7 cut(s) 384, 522, 1098, 1438, 1577, 1604, 1926
XmiI GTMKAC 1 cut(s) 1621
XmnI GAANNNNTTC 1 cut(s) 1324
XspI CTAG 4 cut(s) 377, 1170, 1256, 1728
Zsp2I ATGCAT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.