pycom05g10980

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000376
Physical Location & Seq
Forward (+)
14454356 .. 14459029
4674 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g10980.3

Sequence Viewer

Length: 3699 bp
ATGGCCGGCTCCGAAGCCACCCCTAAAGCTCAACGATCGAAGAACAAAAAGAGAAAGCAGAGGAGTCTTGGAGCATCCGAAAGGCCTTCGAAAACGCAGCGTATTATTGTCTCAGAGAAGGAGAGTGAACCGCAAGAAATGATTGAAGTTGGAGCAGATGAAAAGCACGAGGCGAGAGAACCCAGTCACGAGCTTGAAGAAGGCGGTCCATGGCGGAACCTGGAGTTGGTTTTGTCAATCCAGAACAAAGAAATTGATCTTGAGAAGAAGGTGGAACTAGCTTATGGTTTTGTGATATCTAGAGCGAAAGAAGAAGGTGGCAAGAGTAACCAGGATACTCAAGCAGTCAATATGTCACGTTTAATAATTTTTGTCAATGATTGGATCCAGTCATTGTTGATTTCTTCAGGAAAGAAAATTCAGAGTGGTGGAGAGAAGCATCAAGCCGAAGTTATTGACACATATTTGGATGTTAGATGCTGGGAAATTTTCAAATTCTGTTTGGAGGAGTCTTTGAAAGTGAATGTTTCTCTAAATTTCTCACGGAACCTTTTACACTCTATTGGTTTGATCGCAAGAAATGCACTGTCCTTATTGAACAAAACATCTTCACGCTCAACTTTGTTTTCCAGTAGTGAAGGGTTACAATTGTACAACACTGTGCTTGATTGCATAGCTTTGGTGTTTTCATCCCATGGAGGCTTATCAAATGAAAATTTAGATCTCTGGGTTTCAACTGTAGGTGCAGTGCTTGATCTAGTCCACAAATTATACGGTGAAAATCTTGCCTGTGGCAATGGAGGTGACTTTGTTTTCCGATTTGTGAGCTTGGTGTTTGAGCCATTTGCCAAGTTTTTGAGGGCCCACCCAGCTCGGAAGAACGGATTTCGTGATTTTATCAATAAACTCCTTGAGCCTCTGTTGCATCTATTGGGTCTCTTGCATCTTCAGATTGAGGGAATTAATCCTGATTGGACAAGAAACTTATTGAAGCTAGTTGAAGAAGTATTATCTCATGGGCTGTATCACCCAATCCACATTGATGGATTTTTGAGCTTGTGCAGTAGTGAAAAATATGCCACATCCAATTCTGGGAAGTCAAAGGACTCCAAAACAACGCTCAAGAGTTATCACAGACATTTATTTGATAAACTGGAAAGAATTTTAGCTGGAAAGAATGCTTTGGCAGTGGAAAGCATAGGAGAACTATTTCGCTTGCTCATCGATCAAGTTAAAAAGCTAAAAAGGGCTTCAGTGCTGACTGAAAATACCAAAATGATGGGGAAGACTGAAGGTTCAACTAGTACTGCACTAGCTGAAAAGAATTACTGCTCAACTAGCTTCAATGCGGAAACACGAAAGTCACTTCTTGATTTTTTTGTACTGATTATGGAGCCTCTTCTGCTTGAGATTAACGGCTATATTGAAACTAAGCTGGAAATGGGACCTGTATTGTTGGATGTTCATTGCACGCTTAAATCTGTTAATAATTTAGTTTTTGGCTTTATGCATGAAAAGGTTTATGTGAGAACGGAGGATACATCTACTAGAGCTTGCCTTAATTTCTTGAAGAAGGTTTATAATATGATTATATCATTGTCCTCCAATTTAATTCAGTCATCAAAGTATGATGTAGTTAACGGGACACACGTGGATGCTTTAACTTTAATAGCCAATGAGGTGCTTTCTGCTGTGGGGTATCTAATGGAAATTGAATATGAGGTTATAGAGAATGATTTAGTAAGCTTGTGGCTTCTGATGCTTTCTCACTTAGCCATTGGGATTTCACTGATGGATGTTCCGGATCGGTGCTCATTATCTTTCAAGATAACCGATATTGGATGTCAATTAGTTGTTCTCTATAGTCAACTTCGCCAGGTGAATAATACCATTTTTGCATTGTGTAAAGCAATAAGGCTTTTAAGTTCACATAATGGTGATGGTGAACGAAACTATACTAGATTTGTGATTTCTTTACATGGTGAAGCTTATGCAAAATCAGTGGAAATGTTATTATGCTCGCAAGAGTTTAAGATTGCAATCCAACAAGCTATAAAGTCCATACCAGAAGGCCAAGCAAGTGGGTTTATTGGGCAGTTAACTGTCGATATATCAGAATCTCTAGAGTGGATGAAAATTAGTTGTTCAAAATCTGATGAAAAGGAAGTTGACAATTGGGATGTGCAAAGTAGCTCGCATGGTTTTAATCTGGAAGCTGAGCTTTTGGGGAGAGGGTTGTCTGAAATGTATGCATTAGTGCTAGACTCACTATTTGCCACAACTGGAAACTGTAATCTCCTTGGAGTTTCTATAAAGGACCTTATAGCATTACTTTTTCCTTGCATGGGCCATCTGGTTTCACAACAGCCAGATTCTTTAAACAAGTTCCTTTTTTCTGTCACGGGAAAAGGTTTTGATAATGAGACAGCTGAGAACAAAACTAATTTGCTGATATTTGGATTATCCACTCATTGGGTTTTTGTGTTCTTCTTTCGATTGTATATGTCCTGCCAAAGCTTATATAGGTCAGCAACGAGCCTTATGCCTCCAGATTTATCAAGAAAGATGTCAGCAGCAATGGGAGATTCATTCGCATCATACTCTGGTAGTGATTGGATGGAGATGACTGACTGGACCAGTGGGGGATATTTTTCTTGGATCAAGCAACCTTCAGCTCCTCTTCTTGTTGTTGTTCAATCCATTTCAAACATCTATTGTAAGAACTGTGCAACAGATTCTTGGTCTTTGACTTATGTAATGCATGCTATGGCTTTTAGAAGGCTTGTTGATTTGAATAGGCATATAAAGTCTTCTGAATATGTGATGCAACATAACAAAAATCTGGTGCAAGTCAGGTTGCCTGAAGATGCTGGCTTGTCAAGGTGTCATAAAAGAATCAAAAAGTTAGAAAGGCACATCTCTGCCTTGAGGGAAGAGGCGGCAGGTCTTACTGGTTTTCTGATGGAGCACCTTTCATTAGTGTCTGAAGATCAACAGCCAATCTTCACTTCTGATGATACAAGTTGTACTAAAATGGTTGCCCAGGAAACTGATGAATGGGATTTCAGTGTTTCTGCTTTGAACAAGAAGTCACTGCCAACTGCAATTTGGTGGATTCTTTGCCACAATATTGATACCTGGTGCACTCATGCGACTAAAAAGAATTTGAAGACATTCCTTTCTCTTTTAATCCAAACTTCCCTTCCCTGTGTAAGAAGCAGCTTTGGGGTGGTTAGAGAGCACAATAACCATGCAGCTGACAGGATGAAGAAAGTAACCTTGCATCAAATCTCATCGCATTGCTTCATTGACTCCATTCTGTATGAGCAAAGATTTGTCCGCAGGCATTTTGCATCAAGTTTTTGCCGTGCATTGGAGAATTCAACAGTACAATTCATCAGTGACTTTTCATCTGGCGATTGTGATTTCAAATCATCACCAAATTGGGCGAAAGTGTTAAATGACCTGGAGAACTCATCAGTGGTTGTTTCCTCTAATAAACATTACATATTTGACCGTTCCTCCATAGCAAATCCGGTCACTGGTGCTTCTGATAAGCTTCTTACAGGAAGTTGCAAGGAACAAGAAGCCCTACCATTGACCATCATGAAATTTACTGCTTGCCAGAGTTTACTTAATCTATTGTGCCACATGCCAAAAGGTCATTTGAGTTCAATCGATCAATTTCACTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

1233

Amino Acids

138.45

Weight (kDa)

6.6

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1581
Acc36I ACCTGC 1 cut(s) 2933
AccB7I CCANNNNNTGG 1 cut(s) 2472
AccIII TCCGGA 1 cut(s) 1801
AciI CCGC 6 cut(s) 131, 204, 214, 1349, 2939, 3340
AclWI GGATC 4 cut(s) 379, 392, 1812, 2666
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 9 cut(s) 417, 486, 494, 535, 715, 1161, 3163, 3379, 3611
AcuI CTGAAG 7 cut(s) 390, 932, 1236, 1311, 2655, 2883, 3006
AcvI CACGTG 1 cut(s) 1651
AfaI GTAC 5 cut(s) 653, 1306, 1383, 3028, 3390
AfiI CCNNNNNNNGG 6 cut(s) 226, 1092, 2345, 2472, 3373, 3542
AflIII ACRYGT 1 cut(s) 1648
AhlI ACTAGT 1 cut(s) 1301
AjnI CCWGG 6 cut(s) 219, 330, 1875, 3042, 3137, 3465
AjuI GAANNNNNNNTTGG 6 cut(s) 209, 241, 2992, 3024, 3186, 3218
Alw21I GWGCWC 4 cut(s) 1814, 2970, 3146, 3243
Alw26I GTCTC 3 cut(s) 115, 941, 2417
Alw44I GTGCAC 1 cut(s) 3142
AlwI GGATC 4 cut(s) 379, 392, 1812, 2666
Aor13HI TCCGGA 1 cut(s) 1801
AoxI GGCC 5 cut(s) 3, 83, 861, 2071, 2347
ApaI GGGCCC 1 cut(s) 865
ApaLI GTGCAC 1 cut(s) 3142
ApeKI GCWGC 4 cut(s) 97, 2573, 3219, 3254
ApoI RAATTY 9 cut(s) 417, 486, 494, 535, 715, 1161, 3163, 3379, 3611
ArsI GACNNNNNNTTYG 2 cut(s) 2255, 2287
AseI ATTAAT 1 cut(s) 963
Asp700I GAANNNNTTC 2 cut(s) 1209, 3173
AspS9I GGNCC 7 cut(s) 206, 861, 862, 1445, 2317, 2347, 2634
AsuHPI GGTGA 8 cut(s) 788, 815, 1019, 1891, 1949, 1955, 1994, 3429
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 4 cut(s) 206, 1445, 2317, 2634
BaeGI GKGCMC 2 cut(s) 865, 3146
BamHI GGATCC 1 cut(s) 384
BanII GRGCYC 1 cut(s) 865
BauI CACGAG 2 cut(s) 167, 188
BbrPI CACGTG 1 cut(s) 1651
BbsI GAAGAC 3 cut(s) 1292, 2802, 3176
Bbv12I GWGCWC 4 cut(s) 1814, 2970, 3146, 3243
BbvI GCAGC 4 cut(s) 109, 2585, 3231, 3266
BccI CCATC 8 cut(s) 1037, 1273, 1786, 1934, 2358, 2611, 2956, 3611
BceAI ACGGC 2 cut(s) 1432, 3351
BcgI CGANNNNNNTGC 2 cut(s) 2524, 2558
BciT130I CCWGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
BciVI GTATCC 2 cut(s) 328, 1531
BcoDI GTCTC 3 cut(s) 115, 941, 2417
BcuI ACTAGT 1 cut(s) 1301
BfmI CTRYAG 2 cut(s) 738, 1861
BfuAI ACCTGC 1 cut(s) 2933
BfuI GTATCC 2 cut(s) 328, 1531
BglII AGATCT 1 cut(s) 721
BisI GCNGC 5 cut(s) 98, 2574, 2940, 3220, 3255
BlpI GCTNAGC 1 cut(s) 2217
BlsI GCNGC 5 cut(s) 99, 2575, 2941, 3221, 3256
BmcAI AGTACT 1 cut(s) 1306
Bme1390I CCNGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
Bme18I GGWCC 4 cut(s) 206, 1445, 2317, 2634
BmgT120I GGNCC 7 cut(s) 206, 861, 862, 1445, 2317, 2347, 2634
BmiI GGNNCC 7 cut(s) 10, 218, 386, 548, 863, 1395, 1446
BmrFI CCNGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 3 cut(s) 1292, 2802, 3176
BpmI CTGGAG 3 cut(s) 242, 2532, 3488
Bpu1102I GCTNAGC 1 cut(s) 2217
Bpu14I TTCGAA 1 cut(s) 89
BpuEI CTTGAG 6 cut(s) 281, 324, 932, 1106, 1427, 2947
Bsa29I ATCGAT 2 cut(s) 1224, 3678
BsaAI YACGTR 1 cut(s) 1651
BsaBI GATNNNNATC 1 cut(s) 2039
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 4 cut(s) 209, 694, 2299, 3042
BsaWI WCCGGW 2 cut(s) 1801, 3535
BsaXI ACNNNNNCTCC 2 cut(s) 3506, 3536
Bsc4I CCNNNNNNNGG 6 cut(s) 226, 1092, 2345, 2472, 3373, 3542
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 9 cut(s) 183, 388, 630, 1158, 2287, 2636, 2637, 2956, 3547
Bse3DI GCAATG 4 cut(s) 802, 1465, 2583, 3298
Bse8I GATNNNNATC 1 cut(s) 2039
BseAI TCCGGA 1 cut(s) 1801
BseBI CCWGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
BseCI ATCGAT 2 cut(s) 1224, 3678
BseDI CCNNGG 4 cut(s) 209, 694, 2299, 3042
BseJI GATNNNNATC 1 cut(s) 2039
BseLI CCNNNNNNNGG 6 cut(s) 226, 1092, 2345, 2472, 3373, 3542
BseMI GCAATG 4 cut(s) 802, 1465, 2583, 3298
BseMII CTCAG 3 cut(s) 126, 2208, 2421
BseNI ACTGG 9 cut(s) 183, 388, 630, 1158, 2287, 2636, 2637, 2956, 3547
BseRI GAGGAG 3 cut(s) 76, 521, 2667
BseSI GKGCMC 2 cut(s) 865, 3146
BseXI GCAGC 4 cut(s) 109, 2585, 3231, 3266
BseYI CCCAGC 2 cut(s) 480, 868
BsgI GTGCAG 3 cut(s) 765, 1081, 1293
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 5 cut(s) 5, 85, 863, 2073, 2349
BshVI ATCGAT 2 cut(s) 1224, 3678
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 4 cut(s) 1814, 2970, 3146, 3243
BsiSI CCGG 3 cut(s) 6, 1802, 3536
BslFI GGGAC 2 cut(s) 1458, 1657
BslI CCNNNNNNNGG 6 cut(s) 226, 1092, 2345, 2472, 3373, 3542
BsmAI GTCTC 3 cut(s) 115, 941, 2417
BsmFI GGGAC 2 cut(s) 1458, 1657
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 5 cut(s) 5, 85, 863, 2073, 2349
Bso31I GGTCTC 1 cut(s) 941
Bsp119I TTCGAA 1 cut(s) 89
Bsp120I GGGCCC 1 cut(s) 861
Bsp1286I GDGCHC 5 cut(s) 865, 1814, 2970, 3146, 3243
Bsp13I TCCGGA 1 cut(s) 1801
Bsp1407I TGTACA 1 cut(s) 651
Bsp1720I GCTNAGC 1 cut(s) 2217
Bsp19I CCATGG 2 cut(s) 209, 694
BspACI CCGC 6 cut(s) 131, 204, 214, 1349, 2939, 3340
BspANI GGCC 5 cut(s) 5, 85, 863, 2073, 2349
BspCNI CTCAG 3 cut(s) 125, 2209, 2422
BspDI ATCGAT 2 cut(s) 1224, 3678
BspEI TCCGGA 1 cut(s) 1801
BspHI TCATGA 1 cut(s) 3606
BspLI GGNNCC 7 cut(s) 10, 218, 386, 548, 863, 1395, 1446
BspMI ACCTGC 1 cut(s) 2933
BspPI GGATC 4 cut(s) 379, 392, 1812, 2666
BspT104I TTCGAA 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 941
BsrDI GCAATG 4 cut(s) 802, 1465, 2583, 3298
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 9 cut(s) 183, 388, 630, 1158, 2287, 2636, 2637, 2956, 3547
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 4 cut(s) 209, 694, 2299, 3042
BssSI CACGAG 2 cut(s) 167, 188
BssT1I CCWWGG 3 cut(s) 209, 694, 2299
Bst2BI CACGAG 2 cut(s) 167, 188
Bst2UI CCWGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
Bst4CI ACNGT 9 cut(s) 588, 661, 739, 776, 2104, 2291, 2726, 3388, 3518
Bst6I CTCTTC 3 cut(s) 1404, 2685, 2928
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 651
BstBAI YACGTR 1 cut(s) 1651
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 5 cut(s) 112, 1431, 1771, 2217, 2430
BstDSI CCRYGG 2 cut(s) 209, 694
BstMAI GTCTC 3 cut(s) 115, 941, 2417
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 6 cut(s) 581, 869, 922, 1338, 1402, 1759
BstNI CCWGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
BstNSI RCATGY 2 cut(s) 2765, 3655
BstSCI CCNGG 6 cut(s) 219, 330, 1875, 3042, 3137, 3465
BstSFI CTRYAG 2 cut(s) 738, 1861
BstSLI GKGCMC 2 cut(s) 865, 3146
BstV1I GCAGC 4 cut(s) 109, 2585, 3231, 3266
BstV2I GAAGAC 3 cut(s) 1292, 2802, 3176
BstX2I RGATCY 2 cut(s) 384, 721
BstXI CCANNNNNNTGG 3 cut(s) 1043, 1279, 2081
BstYI RGATCY 2 cut(s) 384, 721
Bsu15I ATCGAT 2 cut(s) 1224, 3678
BsuI GTATCC 2 cut(s) 328, 1531
BsuRI GGCC 5 cut(s) 5, 85, 863, 2073, 2349
BsuTUI ATCGAT 2 cut(s) 1224, 3678
BtgI CCRYGG 2 cut(s) 209, 694
BtgZI GCGATG 1 cut(s) 3279
BtsI GCAGTG 3 cut(s) 753, 1194, 3092
BveI ACCTGC 1 cut(s) 2933
CciI TCATGA 1 cut(s) 3606
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 7 cut(s) 206, 861, 862, 1445, 2317, 2347, 2634
ClaI ATCGAT 2 cut(s) 1224, 3678
CsiI ACCWGGT 1 cut(s) 3137
Csp6I GTAC 5 cut(s) 652, 1305, 1382, 3027, 3389
CspCI CAANNNNNGTGG 2 cut(s) 1983, 2018
CviQI GTAC 5 cut(s) 652, 1305, 1382, 3027, 3389
DdeI CTNAG 5 cut(s) 112, 1431, 1771, 2217, 2430
DraI TTTAAA 1 cut(s) 2379
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 1404, 2685, 2928
EarI CTCTTC 3 cut(s) 1404, 2685, 2928
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 209, 694, 2299
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 941
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 4 cut(s) 206, 1445, 2317, 2634
Eco57I CTGAAG 7 cut(s) 390, 932, 1236, 1311, 2655, 2883, 3006
Eco72I CACGTG 1 cut(s) 1651
EcoO109I RGGNCCY 3 cut(s) 861, 1445, 2317
EcoRI GAATTC 1 cut(s) 3379
EcoRII CCWGG 6 cut(s) 219, 330, 1875, 3042, 3137, 3465
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 3 cut(s) 209, 694, 2299
EcoT22I ATGCAT 3 cut(s) 1512, 2254, 2763
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 3 cut(s) 209, 694, 2299
FalI AAGNNNNNCTT 2 cut(s) 2205, 2237
FaqI GGGAC 2 cut(s) 1458, 1657
Fnu4HI GCNGC 5 cut(s) 98, 2574, 2940, 3220, 3255
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 5 cut(s) 98, 2574, 2940, 3220, 3255
GluI GCNGC 5 cut(s) 98, 2574, 2940, 3220, 3255
GsaI CCCAGC 2 cut(s) 484, 872
GsuI CTGGAG 3 cut(s) 242, 2532, 3488
HaeIII GGCC 5 cut(s) 5, 85, 863, 2073, 2349
HapII CCGG 3 cut(s) 6, 1802, 3536
HincII GTYRAC 4 cut(s) 1639, 1868, 2100, 2170
HindII GTYRAC 4 cut(s) 1639, 1868, 2100, 2170
HindIII AAGCTT 4 cut(s) 1744, 1986, 2515, 3557
HpaI GTTAAC 2 cut(s) 1639, 2100
HpaII CCGG 3 cut(s) 6, 1802, 3536
HphI GGTGA 8 cut(s) 788, 815, 1019, 1891, 1949, 1955, 1994, 3429
HpyCH4III ACNGT 9 cut(s) 588, 661, 739, 776, 2104, 2291, 2726, 3388, 3518
HpyCH4IV ACGT 2 cut(s) 358, 1650
HpyF10VI GCNNNNNNNGC 6 cut(s) 581, 869, 922, 1338, 1402, 1759
HpyF3I CTNAG 5 cut(s) 112, 1431, 1771, 2217, 2430
HpySE526I ACGT 2 cut(s) 358, 1650
Kpn2I TCCGGA 1 cut(s) 1801
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
KspAI GTTAAC 2 cut(s) 1639, 2100
LmnI GCTCC 6 cut(s) 14, 71, 152, 1393, 2680, 2965
Lsp1109I GCAGC 4 cut(s) 109, 2585, 3231, 3266
MabI ACCWGGT 1 cut(s) 3137
MaeII ACGT 2 cut(s) 358, 1650
MfeI CAATTG 2 cut(s) 647, 2173
MflI RGATCY 2 cut(s) 384, 721
MhlI GDGCHC 5 cut(s) 865, 1814, 2970, 3146, 3243
MlyI GAGTC 5 cut(s) 73, 518, 1100, 2258, 3305
MmeI TCCRAC 3 cut(s) 130, 1437, 2068
Mph1103I ATGCAT 3 cut(s) 1512, 2254, 2763
MroI TCCGGA 1 cut(s) 1801
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 1209, 3173
MslI CAYNNNNRTG 3 cut(s) 1041, 1653, 1935
MspA1I CMGCKG 2 cut(s) 2429, 3257
MspI CCGG 3 cut(s) 6, 1802, 3536
MspR9I CCNGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
MunI CAATTG 2 cut(s) 647, 2173
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
MwoI GCNNNNNNNGC 6 cut(s) 581, 869, 922, 1338, 1402, 1759
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 2 cut(s) 209, 694
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 7 cut(s) 10, 218, 386, 548, 863, 1395, 1446
NmuCI GTSAC 8 cut(s) 185, 354, 803, 1362, 2398, 3090, 3401, 3538
NsiI ATGCAT 3 cut(s) 1512, 2254, 2763
NspI RCATGY 2 cut(s) 2765, 3655
NspV TTCGAA 1 cut(s) 89
PaeI GCATGC 1 cut(s) 2765
PagI TCATGA 1 cut(s) 3606
PceI AGGCCT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 1647
PctI GAATGC 1 cut(s) 1183
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 2 cut(s) 1209, 3173
PfeI GAWTC 6 cut(s) 2117, 2372, 2585, 2735, 2895, 3115
PflMI CCANNNNNTGG 1 cut(s) 2472
PkrI GCNGC 5 cut(s) 99, 2575, 2941, 3221, 3256
Ple19I CGATCG 1 cut(s) 38
PleI GAGTC 5 cut(s) 72, 517, 1100, 2258, 3305
PmaCI CACGTG 1 cut(s) 1651
PmlI CACGTG 1 cut(s) 1651
PpsI GAGTC 5 cut(s) 72, 517, 1100, 2258, 3305
Ppu21I YACGTR 1 cut(s) 1651
PpuMI RGGWCCY 2 cut(s) 1445, 2317
PshBI ATTAAT 1 cut(s) 963
PsiI TTATAA 1 cut(s) 1581
Psp5II RGGWCCY 2 cut(s) 1445, 2317
Psp6I CCWGG 6 cut(s) 219, 330, 1875, 3042, 3137, 3465
PspCI CACGTG 1 cut(s) 1651
PspFI CCCAGC 2 cut(s) 480, 868
PspGI CCWGG 6 cut(s) 219, 330, 1875, 3042, 3137, 3465
PspN4I GGNNCC 7 cut(s) 10, 218, 386, 548, 863, 1395, 1446
PspOMI GGGCCC 1 cut(s) 861
PspPI GGNCC 7 cut(s) 206, 861, 862, 1445, 2317, 2347, 2634
PspPPI RGGWCCY 2 cut(s) 1445, 2317
PsrI GAACNNNNNNTAC 2 cut(s) 1522, 1554
PsuI RGATCY 2 cut(s) 384, 721
PvuI CGATCG 1 cut(s) 38
PvuII CAGCTG 2 cut(s) 2429, 3257
RsaI GTAC 5 cut(s) 653, 1306, 1383, 3028, 3390
RsaNI GTAC 5 cut(s) 652, 1305, 1382, 3027, 3389
RseI CAYNNNNRTG 3 cut(s) 1041, 1653, 1935
SatI GCNGC 5 cut(s) 98, 2574, 2940, 3220, 3255
Sau96I GGNCC 7 cut(s) 206, 861, 862, 1445, 2317, 2347, 2634
ScaI AGTACT 1 cut(s) 1306
SchI GAGTC 5 cut(s) 73, 518, 1100, 2258, 3305
ScrFI CCNGG 6 cut(s) 221, 332, 1877, 3044, 3139, 3467
SduI GDGCHC 5 cut(s) 865, 1814, 2970, 3146, 3243
SexAI ACCWGGT 1 cut(s) 3137
SfcI CTRYAG 2 cut(s) 738, 1861
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 4 cut(s) 206, 1445, 2317, 2634
SmiMI CAYNNNNRTG 3 cut(s) 1041, 1653, 1935
SmlI CTYRAG 6 cut(s) 260, 339, 911, 1121, 1406, 2926
SmoI CTYRAG 6 cut(s) 260, 339, 911, 1121, 1406, 2926
SpeI ACTAGT 1 cut(s) 1301
SphI GCATGC 1 cut(s) 2765
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 6 cut(s) 131, 204, 214, 1349, 2939, 3340
SspI AATATT 1 cut(s) 3130
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 6 cut(s) 219, 330, 1875, 3042, 3137, 3465
StyI CCWWGG 3 cut(s) 209, 694, 2299
TaaI ACNGT 9 cut(s) 588, 661, 739, 776, 2104, 2291, 2726, 3388, 3518
TaiI ACGT 2 cut(s) 361, 1653
TaqI TCGA 6 cut(s) 38, 89, 1224, 2106, 2494, 3678
TatI WGTACW 5 cut(s) 651, 1304, 1381, 3026, 3388
TauI GCSGC 1 cut(s) 2942
TfiI GAWTC 6 cut(s) 2117, 2372, 2585, 2735, 2895, 3115
TseFI GTSAC 8 cut(s) 185, 354, 803, 1362, 2398, 3090, 3401, 3538
TseI GCWGC 4 cut(s) 97, 2573, 3219, 3254
Tsp45I GTSAC 8 cut(s) 185, 354, 803, 1362, 2398, 3090, 3401, 3538
TspGWI ACGGA 3 cut(s) 559, 897, 1547
Van91I CCANNNNNTGG 1 cut(s) 2472
VneI GTGCAC 1 cut(s) 3142
VpaK11BI GGWCC 4 cut(s) 206, 1445, 2317, 2634
VspI ATTAAT 1 cut(s) 963
XapI RAATTY 9 cut(s) 417, 486, 494, 535, 715, 1161, 3163, 3379, 3611
XbaI TCTAGA 2 cut(s) 299, 2122
XceI RCATGY 2 cut(s) 2765, 3655
XcmI CCANNNNNNNNNTGG 1 cut(s) 3105
XmnI GAANNNNTTC 2 cut(s) 1209, 3173
ZrmI AGTACT 1 cut(s) 1306
Zsp2I ATGCAT 3 cut(s) 1512, 2254, 2763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.