RchiOBHm_Chr6g0244911

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
883007 .. 885612
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21949

Sequence Viewer

Length: 1089 bp
ATGGGATATCAGTATTTACTCTGTGAACAAGAACTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCTCATGCCTCTAAAAAGGATTTGAAGAAATTCCTCTCTCTTTTAATCCATATTTCCCTTCCTTATGTAAGAAGCAGCTTTGGGGTGGTTATAGAGCACAAAAACCATGAAGCTGACAGGCTGAAGAATGTAGCATTGCATCAAATCTCATCACAGCGCTTTATTGATTCCAGTCTGTATGAGCAAAGATTTGTCCGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCGTTTATCAGCGACTTTCCATCGGGCAATGTTAAATTCAAATCATCACCTAATTGGCTGAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCTGCAACAAGCTCAATGTATTTGATTGTTCCTCTGCCTCAAGTTGCAAGGGACAAAACTCTCAACCATCTACCATCATGAAATTTACAGCTTGTCAGAGTTTGCTTAATCTTTTGAGTTGTATGCCAAAAGGTCATTTGGACACGAGATCATTTTCACATTATGTGACTTCTATTCTCAACCTCAAAAGGATTGTTGTTGGCGGCTTATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTCTTCAGATTGTTTGTGTCCTGTCGGAAGGCCTTAAGATGTATAATTATTGATTGTGAGGAGACCGGAGCCAGTCAAACCTCAGACATTCGAGTACTCTTTGAGGATTTATTTCCTGTTTCATGGCTTTACAGGTCAGTGCATATGGTTGCTGAGCTTCAAGAGTCATTCTCAAAGGATATTTGTCATGAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGCTTCTGACATTAAATAAACATCAACCTAATCATGCTGGATGTGCCCAAGAACAGAGAGGTTTATTGAATTCGTCCAATTATCTTGAAGCCTGGAAAAGTGTAAACGTTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTCATCAAGCTTGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

362

Amino Acids

41.26

Weight (kDa)

8.72

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 85
AciI CCGC 2 cut(s) 283, 636
AclI AACGTT 1 cut(s) 1026
AclWI GGATC 1 cut(s) 912
AcsI RAATTY 4 cut(s) 116, 368, 515, 988
AcuI CTGAAG 2 cut(s) 230, 673
AfaI GTAC 1 cut(s) 780
AfeI AGCGCT 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 316
AflII CTTAAG 2 cut(s) 400, 718
AgsI TTSAA 6 cut(s) 112, 373, 845, 988, 1007, 1045
AjnI CCWGG 1 cut(s) 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 7 cut(s) 165, 200, 445, 524, 685, 841, 1078
AluI AGCT 7 cut(s) 165, 200, 445, 524, 685, 841, 1078
Alw21I GWGCWC 2 cut(s) 186, 687
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 1 cut(s) 912
Aor51HI AGCGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 4 cut(s) 116, 368, 515, 988
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 967
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 687
BauI CACGAG 1 cut(s) 577
Bbv12I GWGCWC 2 cut(s) 186, 687
BbvI GCAGC 1 cut(s) 174
BccI CCATC 3 cut(s) 361, 508, 515
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 1012
BcoDI GTCTC 1 cut(s) 740
BfoI RGCGCY 1 cut(s) 247
BfrI CTTAAG 2 cut(s) 400, 718
BfuAI ACCTGC 1 cut(s) 276
BglII AGATCT 1 cut(s) 1059
BisI GCNGC 2 cut(s) 163, 637
BlpI GCTNAGC 1 cut(s) 837
BlsI GCNGC 2 cut(s) 164, 638
BmcAI AGTACT 1 cut(s) 780
Bme1390I CCNGG 1 cut(s) 1012
BmiI GGNNCC 2 cut(s) 87, 754
BmrFI CCNGG 1 cut(s) 1012
BmsI GCATC 2 cut(s) 235, 1044
BplI GAGNNNNNCTC 2 cut(s) 839, 871
Bpu1102I GCTNAGC 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 1058
BsaI GGTCTC 1 cut(s) 740
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 258, 756
Bse3DI GCAATG 3 cut(s) 36, 221, 367
Bse8I GATNNNNATC 1 cut(s) 1058
BseBI CCWGG 1 cut(s) 1012
BseGI GGATG 1 cut(s) 965
BseJI GATNNNNATC 1 cut(s) 1058
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 3 cut(s) 36, 221, 367
BseMII CTCAG 2 cut(s) 780, 828
BseNI ACTGG 2 cut(s) 258, 756
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 1 cut(s) 716
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 186, 687
BsiSI CCGG 1 cut(s) 750
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 1 cut(s) 716
Bso31I GGTCTC 1 cut(s) 740
Bsp1286I GDGCHC 3 cut(s) 186, 687, 967
Bsp143I GATC 4 cut(s) 581, 888, 904, 1059
Bsp1720I GCTNAGC 1 cut(s) 837
BspACI CCGC 2 cut(s) 283, 636
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 2 cut(s) 779, 829
BspHI TCATGA 3 cut(s) 510, 871, 880
BspLI GGNNCC 2 cut(s) 87, 754
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 912
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 85
BspTI CTTAAG 2 cut(s) 400, 718
BspTNI GGTCTC 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 36, 221, 367
BsrI ACTGG 2 cut(s) 258, 756
BssMI GATC 4 cut(s) 581, 888, 904, 1059
BssSI CACGAG 1 cut(s) 577
Bst2BI CACGAG 1 cut(s) 577
Bst2UI CCWGG 1 cut(s) 1012
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 692
BstAFI CTTAAG 2 cut(s) 400, 718
BstDEI CTNAG 3 cut(s) 766, 837, 1035
BstF5I GGATG 1 cut(s) 965
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 4 cut(s) 584, 891, 907, 1062
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 4 cut(s) 581, 888, 904, 1059
BstMWI GCNNNNNNNGC 1 cut(s) 962
BstNI CCWGG 1 cut(s) 1012
BstSCI CCNGG 1 cut(s) 1010
BstSLI GKGCMC 1 cut(s) 967
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 1059
BstYI RGATCY 1 cut(s) 1059
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 1 cut(s) 965
BtsIMutI CAGTG 1 cut(s) 828
BveI ACCTGC 1 cut(s) 276
CciI TCATGA 3 cut(s) 510, 871, 880
CfoI GCGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 779
CviAII CATG 9 cut(s) 78, 82, 92, 194, 511, 807, 872, 881, 953
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 3 cut(s) 766, 837, 1035
DpnI GATC 4 cut(s) 583, 890, 906, 1061
DpnII GATC 4 cut(s) 581, 888, 904, 1059
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Ecl136II GAGCTC 1 cut(s) 685
Eco147I AGGCCT 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 740
Eco32I GATATC 1 cut(s) 8
Eco47III AGCGCT 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 2 cut(s) 230, 673
EcoICRI GAGCTC 1 cut(s) 685
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 1 cut(s) 1010
EcoRV GATATC 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 9 cut(s) 81, 85, 95, 197, 514, 810, 875, 884, 956
FaqI GGGAC 1 cut(s) 498
FatI CATG 9 cut(s) 77, 81, 91, 193, 510, 806, 871, 880, 952
FauNDI CATATG 1 cut(s) 828
Fnu4HI GCNGC 2 cut(s) 163, 637
FokI GGATG 1 cut(s) 972
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 163, 637
GlaI GCGC 1 cut(s) 245
GluI GCNGC 2 cut(s) 163, 637
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 1 cut(s) 716
HapII CCGG 1 cut(s) 750
HhaI GCGC 1 cut(s) 246
Hin1II CATG 9 cut(s) 81, 85, 95, 197, 514, 810, 875, 884, 956
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 2 cut(s) 254, 848
HpaII CCGG 1 cut(s) 750
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 26, 1024
Hpy188I TCNGA 6 cut(s) 531, 654, 692, 711, 769, 927
Hpy188III TCNNGA 5 cut(s) 511, 845, 872, 881, 1004
Hpy8I GTNNAC 2 cut(s) 26, 1024
HpyAV CCTTC 3 cut(s) 155, 706, 1039
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4IV ACGT 1 cut(s) 1026
HpyF10VI GCNNNNNNNGC 1 cut(s) 962
HpyF3I CTNAG 3 cut(s) 766, 837, 1035
HpySE526I ACGT 1 cut(s) 1026
Hsp92II CATG 9 cut(s) 81, 85, 95, 197, 514, 810, 875, 884, 956
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 581, 888, 904, 1059
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 1 cut(s) 752
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 2 cut(s) 235, 1044
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 1 cut(s) 598
MalI GATC 4 cut(s) 583, 890, 906, 1061
MboI GATC 4 cut(s) 581, 888, 904, 1059
MboII GAAGA 3 cut(s) 124, 223, 679
MflI RGATCY 1 cut(s) 1059
MhlI GDGCHC 3 cut(s) 186, 687, 967
MluCI AATT 7 cut(s) 116, 368, 385, 515, 729, 988, 997
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 689
Mph1103I ATGCAT 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 7 cut(s) 131, 366, 401, 540, 719, 899, 932
MslI CAYNNNNRTG 1 cut(s) 53
MspCI CTTAAG 2 cut(s) 400, 718
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 1 cut(s) 1012
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 1012
MwoI GCNNNNNNNGC 1 cut(s) 962
NdeI CATATG 1 cut(s) 828
NdeII GATC 4 cut(s) 581, 888, 904, 1059
NlaIII CATG 9 cut(s) 81, 85, 95, 197, 514, 810, 875, 884, 956
NlaIV GGNNCC 2 cut(s) 87, 754
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 53
PagI TCATGA 3 cut(s) 510, 871, 880
PceI AGGCCT 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 164, 638
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
Psp124BI GAGCTC 1 cut(s) 687
Psp1406I AACGTT 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 1010
PspGI CCWGG 1 cut(s) 1010
PspN4I GGNNCC 2 cut(s) 87, 754
PsuI RGATCY 1 cut(s) 1059
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
RseI CAYNNNNRTG 1 cut(s) 53
SacI GAGCTC 1 cut(s) 687
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 7 cut(s) 131, 366, 401, 540, 719, 899, 932
SatI GCNGC 2 cut(s) 163, 637
Sau3AI GATC 4 cut(s) 581, 888, 904, 1059
ScaI AGTACT 1 cut(s) 780
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 1 cut(s) 1012
SduI GDGCHC 3 cut(s) 186, 687, 967
SfaNI GCATC 2 cut(s) 235, 1044
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 3 cut(s) 400, 472, 718
SmoI CTYRAG 3 cut(s) 400, 472, 718
Sse9I AATT 7 cut(s) 116, 368, 385, 515, 729, 988, 997
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 2 cut(s) 283, 636
SspI AATATT 1 cut(s) 74
SstI GAGCTC 1 cut(s) 687
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 1010
TaaI ACNGT 1 cut(s) 336
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 1 cut(s) 775
TasI AATT 7 cut(s) 116, 368, 385, 515, 729, 988, 997
TatI WGTACW 1 cut(s) 778
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 7 cut(s) 131, 366, 401, 540, 719, 899, 932
Tru9I TTAA 7 cut(s) 131, 366, 401, 540, 719, 899, 932
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 7 cut(s) 66, 210, 527, 651, 795, 869, 888
TspRI CASTG 1 cut(s) 828
Vha464I CTTAAG 2 cut(s) 400, 718
XapI RAATTY 4 cut(s) 116, 368, 515, 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 780
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.