Rh6AG026500

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3248517 .. 3248855
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG026500.1

Sequence Viewer

Length: 339 bp
ATGGCTTGTGAAAGGCTTGTGCATTTGAATAGTCGTATAAAGTCTTTTGAGTATTTGATTGAAAACGGTGACAATCTGGTGCAAGTTGTGGATATCGATTCTTTGAGGCAAGAGGCAGCAGGACTCACTGGTTTTATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCAAATATTCACTTCTGCTGATACGACTAATAACAAGATGGTTATCTACGAAAGTGATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACGTACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCATGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

4.58

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 28, 62
AleI CACNNNNGTG 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 128
BccI CCATC 2 cut(s) 133, 205
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 215
BseMI GCAATG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 147, 327
Bsp143I GATC 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 68
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 315, 319, 330
CviJI RGCY 2 cut(s) 5, 16
CviKI_1 RGCY 2 cut(s) 5, 16
CviQI GTAC 1 cut(s) 280
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco32I GATATC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 320
FaeI CATG 3 cut(s) 318, 322, 333
FaiI YATR 5 cut(s) 38, 137, 316, 320, 331
FatI CATG 3 cut(s) 314, 318, 329
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 318, 322, 333
HinfI GANTC 2 cut(s) 98, 123
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 22, 82, 285, 318
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 3 cut(s) 318, 322, 333
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 62, 105, 114
Lsp1109I GCAGC 1 cut(s) 128
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 147, 327
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 4 cut(s) 99, 106, 158, 337
Mph1103I ATGCAT 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 290
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 318, 322, 333
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 290
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 324
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 290
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 2 cut(s) 147, 327
SetI ASST 2 cut(s) 150, 281
SmiMI CAYNNNNRTG 1 cut(s) 290
SspI AATATT 2 cut(s) 180, 311
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 246, 303
TspRI CASTG 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.