Rh6AG026300

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3244163 .. 3244520
358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG026300.1

Sequence Viewer

Length: 315 bp
ATGTCATCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCCTGTTATTGGAATCAGCAAACGCGAGTCAGGTGCCACACTTCTATAATTTTGTGTGTTTAGATGGCGTTCTGAAGTATCTGGAAGAATTGAGGAATCATTTTCCTTTGACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGTTGGCTCAGCAACAGTTAGGGGCTCTCATGAAACAAGCAACACACTCCTTTCTCCTATGGGATTTTCCAAAGCATCATCTTTTGCTGTCTGGGAATACTTATTGGATAAATTCAAAGCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

7.96

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 1 cut(s) 68
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 303
AluBI AGCT 2 cut(s) 12, 307
AluI AGCT 2 cut(s) 12, 307
ApoI RAATTY 1 cut(s) 298
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 214
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BfaI CTAG 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 68
BstUI CGCG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 216
CviAII CATG 1 cut(s) 217
CviJI RGCY 4 cut(s) 12, 194, 212, 307
CviKI_1 RGCY 4 cut(s) 12, 194, 212, 307
DdeI CTNAG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 1 cut(s) 220
FaiI YATR 5 cut(s) 21, 38, 90, 218, 247
FatI CATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 214
FspBI CTAG 1 cut(s) 308
Hin1II CATG 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 3 cut(s) 56, 70, 139
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 3 cut(s) 125, 171, 217
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 19, 40
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 220
LpnPI CCDG 6 cut(s) 15, 59, 59, 110, 184, 264
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 308
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 3 cut(s) 91, 131, 298
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 1 cut(s) 129
MvnI CGCG 1 cut(s) 68
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 78
PagI TCATGA 1 cut(s) 216
PfeI GAWTC 2 cut(s) 56, 139
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 14, 78, 167, 309, 313
SfaNI GCATC 1 cut(s) 271
Sse9I AATT 3 cut(s) 91, 131, 298
SspMI CTAG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 204
TasI AATT 3 cut(s) 91, 131, 298
TfiI GAWTC 2 cut(s) 56, 139
TspDTI ATGAA 1 cut(s) 233
XapI RAATTY 1 cut(s) 298
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.