RchiOBHm_Chr6g0245361

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
1184211 .. 1188830
4620 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21991

Sequence Viewer

Length: 528 bp
ATGTCGAGGGTGAAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGCGGTGAACATGTCACGTTTAATAATATTTGTCAGTGATTGGGTCCAATCATTGTTGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCTGAAGTTATATATACGTATTTGGATTTAAGATGCTGGGAGATTTTTAAATTCTGTTTGGAGGAGTCTCTGAAATTAACTGTTTCTTTAACTTTCTCACGGAACCTTTTACGCCCTATATGTTGGATTGCAAGAAGTGCACTGTCCTTATTGAACAAAACATTTATTGGTGAAGGGTTACAATTGTACACTACTGTGCTTGATTGTATTTCATCCCAAGAAGGCTTCTCAAATGAAAATTTAGACGTGTGGATTACAACTGTAAGTTCAGTTCTTGACCTTGGACTTAAATTTTACAGTGAAGCTCTTGTTAGTGGCAATGAGGGTGTATTTGTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

175

Amino Acids

19.56

Weight (kDa)

4.83

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AcsI RAATTY 3 cut(s) 197, 385, 437
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 335
AflIII ACRYGT 2 cut(s) 54, 393
AgsI TTSAA 1 cut(s) 301
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 517
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 2 cut(s) 149, 452
AluI AGCT 2 cut(s) 149, 452
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 219
Alw44I GTGCAC 1 cut(s) 285
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 3 cut(s) 197, 385, 437
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 22, 61, 329
AvaII GGWCC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 219
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 89, 251
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 151, 170
BpuEI CTTGAG 1 cut(s) 526
BsaAI YACGTR 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 359
BseMI GCAATG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 333
BspACI CCGC 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 89, 251
BsrDI GCAATG 1 cut(s) 472
BsrGI TGTACA 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 427
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 5 cut(s) 229, 291, 343, 409, 446
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 165
BstF5I GGATG 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 289
BstSNI TACGTA 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 4 cut(s) 34, 85, 287, 451
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 334
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 149, 372, 452, 510
CviKI_1 RGCY 4 cut(s) 149, 372, 452, 510
CviQI GTAC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 56, 158, 160, 162, 266, 268
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
GsaI CCCAGC 1 cut(s) 187
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 212
HphI GGTGA 3 cut(s) 22, 61, 329
Hpy166II GTNNAC 3 cut(s) 52, 287, 336
Hpy188I TCNGA 2 cut(s) 109, 219
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 3 cut(s) 52, 287, 336
HpyAV CCTTC 4 cut(s) 11, 104, 314, 362
HpyCH4III ACNGT 5 cut(s) 229, 291, 343, 409, 446
HpyCH4IV ACGT 3 cut(s) 61, 164, 393
HpyCH4V TGCA 2 cut(s) 278, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpySE526I ACGT 3 cut(s) 61, 164, 393
Hsp92II CATG 1 cut(s) 58
LpnPI CCDG 2 cut(s) 169, 504
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 2 cut(s) 151, 170
MaeII ACGT 3 cut(s) 61, 164, 393
MaeIII GTNAC 2 cut(s) 57, 324
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 6 cut(s) 197, 221, 329, 385, 437, 487
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 4 cut(s) 14, 28, 202, 463
MseI TTAA 7 cut(s) 65, 176, 195, 224, 236, 435, 526
MslI CAYNNNNRTG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 89, 251
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 58
OliI CACNNNNGTG 1 cut(s) 341
PciI ACATGT 1 cut(s) 54
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 89, 251
PspPI GGNCC 1 cut(s) 88
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 7 cut(s) 65, 176, 195, 224, 236, 435, 526
SatI GCNGC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 289
SetI ASST 8 cut(s) 64, 151, 167, 255, 396, 429, 454, 523
SfaNI GCATC 2 cut(s) 151, 170
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
SnaBI TACGTA 1 cut(s) 165
Sse9I AATT 6 cut(s) 197, 221, 329, 385, 437, 487
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 5 cut(s) 229, 291, 343, 409, 446
TaiI ACGT 3 cut(s) 64, 167, 396
TaqI TCGA 1 cut(s) 5
TasI AATT 6 cut(s) 197, 221, 329, 385, 437, 487
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 7 cut(s) 65, 176, 195, 224, 236, 435, 526
Tru9I TTAA 7 cut(s) 65, 176, 195, 224, 236, 435, 526
TscAI CASTG 4 cut(s) 34, 85, 294, 451
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 348, 396
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 4 cut(s) 34, 85, 294, 451
VneI GTGCAC 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 3 cut(s) 197, 385, 437
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.