Rh6DG025200

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Reverse (-)
2229143 .. 2229532
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG025200.1

Sequence Viewer

Length: 390 bp
ATGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAAGGTTTATAATATCATCATCTCATTGTCCTCCGATTTAATTCAGTTGTCAGTTACACACTCAGATAGTCTAATAGCAAATGAGGTACTTTCTGCTGTAGGATATCTTTTGGAAATTGAATATGATGTTCTAGAGAATGATCTGGGAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCGTTGGGCTTTCTTTGGTGGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAACAGATACTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTTAGTAGAATGCTCTTTGATCAAGCATTTTCCATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

129

Amino Acids

14.54

Weight (kDa)

4.46

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 243
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 64, 185
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 47, 216
AluI AGCT 2 cut(s) 47, 216
AlwNI CAGNNNCTG 1 cut(s) 308
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 243
AseI ATTAAT 1 cut(s) 320
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 347
BclI TGATCA 1 cut(s) 367
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 162, 331
Bme1390I CCNGG 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 4 cut(s) 22, 219, 269, 302
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BsaWI WCCGGW 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 37, 317
BseMII CTCAG 2 cut(s) 30, 141
BseNI ACTGG 1 cut(s) 313
BshFI GGCC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 272
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 2 cut(s) 205, 367
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 31, 140
BspEI TCCGGA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 313
BssMI GATC 2 cut(s) 205, 367
Bst2UI CCWGG 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 39, 127
BstF5I GGATG 2 cut(s) 37, 317
BstKTI GATC 2 cut(s) 208, 370
BstMBI GATC 2 cut(s) 205, 367
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 2 cut(s) 162, 331
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 2 cut(s) 37, 317
CaiI CAGNNNCTG 1 cut(s) 308
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 47, 216, 245, 253
CviKI_1 RGCY 4 cut(s) 47, 216, 245, 253
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 2 cut(s) 39, 127
DpnI GATC 2 cut(s) 207, 369
DpnII GATC 2 cut(s) 205, 367
EaeI YGGCCR 1 cut(s) 243
Eco32I GATATC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 345
EcoRV GATATC 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 6 cut(s) 6, 18, 75, 189, 326, 333
FatI CATG 1 cut(s) 4
FbaI TGATCA 1 cut(s) 367
FokI GGATG 2 cut(s) 44, 324
FspBI CTAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 272
Hin1II CATG 1 cut(s) 8
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 3 cut(s) 40, 100, 130
Hpy188III TCNNGA 3 cut(s) 61, 197, 272
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 39, 127
Hsp92II CATG 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 2 cut(s) 205, 367
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 5 cut(s) 194, 285, 294, 332, 359
LweI GCATC 4 cut(s) 22, 219, 269, 302
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 207, 369
MboI GATC 2 cut(s) 205, 367
MboII GAAGA 1 cut(s) 76
MluCI AATT 5 cut(s) 55, 105, 180, 317, 321
MnlI CCTC 5 cut(s) 22, 34, 46, 106, 142
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 271
MseI TTAA 5 cut(s) 54, 104, 224, 320, 388
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 347
NdeII GATC 2 cut(s) 205, 367
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 266
PshBI ATTAAT 1 cut(s) 320
PsiI TTATAA 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 5 cut(s) 54, 104, 224, 320, 388
Sau3AI GATC 2 cut(s) 205, 367
ScrFI CCNGG 1 cut(s) 347
SetI ASST 5 cut(s) 49, 72, 153, 218, 351
SfaNI GCATC 4 cut(s) 22, 219, 269, 302
SfcI CTRYAG 2 cut(s) 162, 331
Sse9I AATT 5 cut(s) 55, 105, 180, 317, 321
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 345
TasI AATT 5 cut(s) 55, 105, 180, 317, 321
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 5 cut(s) 54, 104, 224, 320, 388
Tru9I TTAA 5 cut(s) 54, 104, 224, 320, 388
TspDTI ATGAA 1 cut(s) 21
VspI ATTAAT 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.