Rh6CG024800

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2253310 .. 2274529
21220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG024800.1

Sequence Viewer

Length: 7209 bp
ATGGCCGATTCTGGAGCTAACCCTAAACAGAGACAACCCAAGAAGAACAAGAAGAAGAGAAAGCAGAGCGGACCCGAAGAATCTGAAAGGCCGCCCAAAACTAACCGCACCAATTCATCAGAGAACGAGAATGAACCACAAGACCAAAACTTTGAAGTTGGAAGAGCTGAAAAGCCCAATCAAGGTGGTCCATGGAGGAACCTGGAGTTAATTCTGTCAATCCAGAACAGAGAGCTTGATCTTCACAAGAAGGTGGAACTAGCTTATGGTTTTGTGATGTCGAGAGGGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGCAGTGAACATGTCACGTTTAGTAATTTTTGTCAGTGATTGGATCCAGTCATTGTTGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCTGAAGTTATTTATACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTCTGAAATTAAATGTTTCTTTAACTTTCTCACGGAACCTTTTACGCTCTATATGTTGGATTGCAAGAAGTGCACTGTCCTCATTGAACAAAACATTTATTGGTGAAGGGTTACAATTGTACACTACTGTGCTTGATTGTATTTCTTTGGTATTTTCATCTCAAGAAGGCTTCTCAAATGAAAATTTAGACATGTGGATTTCAACTGTAAGTTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCTCTTGTTAGTGGCAATGAGGGTGTATTTGTTTTCCGATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAGGGCTCACGCAGCTCGGAAAGATGGATTTCGTGATTTTAGTAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACGAGAAACTTAGTGAAGCTTGTTGAAGATGTATTATCACATGGGCTATATCACCCACTCCACATTGATGGGTTTTTGAGTTTATGCAGTACTGAAAAATGCGCCACATCCAATCATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGAGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCTTTTGCAGTAGAAAGCATAGGAGTATTGTTTCATTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACTGCAAGTACCAAAATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAATGTCTACGATGTCGTCTGAGAGTCGTATTGTTGAAAAAAATTATTGCTCAACTAGTTTCAATCCAGAGACACGAAAGTCGCTTCACTATTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGATGGATGTTCATTGCACACTTAAAGCTATAAATAATGTACTTTCGGTCTTTGTGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAAGGTTTATAATATCATCATCTCATTGTCCTCCGGTTTAATTCAGTTGTCAGTTACACACTCAGATAGTATTACTCTAATAGCAAATGAGGTACTTTCTGCTGTAGGCTATCTTTTGGAAATTGAATATGATGTTCTAGAGAATGATCTGGTAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCATTGGGCTTTCTTTGGTGGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAACAGATACTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTGAATAATACTATCTTTGCATTGTGTAAAGCAATAAGGGTTATTAATTTACATAATAGCGATGGTGAACTGAACTATACTAGATTTGTCATTCCTTTTCATGGTGAAGCATATGCAAAAGCTGTGGAAATACTATTATCTGCGCACGAATTCAAAATTGCAATCCATAAAGCAATGAAGTCCATACCAGAAGGACAAGCAAGTCAGTGTATTTGGCAGTTAACATTGGATATATCAGAATCTCTGGAGTGGATGAAAGTTAGTTGTTCGGAGGCTGATGAAAAAGAATTTTCTGAATGCCATCTAAGTAGCTTGCACAGTTTTAATCTGGAAGCTGAACTTTACGGGAGAGGGTTGTCAGAAATATATGCACTATTCCTAGAGTCATTGATTGTCACAACTGGAAACTGTAACCTTCTTGGCGCTTCTATAAAGGAATTAATTAGAGTGATTTTCCCTTGCATGAGCAATCTGGTTGGACCACAGCAGGAGGATGCTGTAAACAAATTCCTATGGTCTGTCGCGGTAAAAGATTCCGACAATGTGATCGCTAGAAACAAAAACAAATATCTGATATTTGGAGTCTCCACTTATTGGGTAGTTTTGTTCTTCTTTCGATTGTATAGCTCCTGCCGATGCTTATATAGGCAAGCAGCAATCCTTATGCCTCCAGATTTATCAAGAAAGATGTCTGTAGAAATGGGAGATTCGTTCTCCTCATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTTCTTTCTGTGATTCAATCTGTTTCAAACATCTTTTGTAAGGACCGTGCAGCTGATTCTTGTCCTTTAACTTATGTAATGCATGCTATGGCTTGTGAAAGGCTTGTGGATTTGAATAGTCGTATAAAGTCTTTTGAATATTTGATTGAAAATGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCGTTGAGGCAAGAGGCAGCAGGACTCACTGGATTTATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACGACTAATAATAAGATGGTTGACTATGAAAGTGATGAATGGGATTTCAGTATTTGCTTTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCATGCCTCTAAAAAGGATTTGAAGAGATTCCTTTCTCTTTTAATCCATACTTCAATTCCCTATGTAAGAAGCAGCTTGGGGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGGCATTGCATCAAATCTCATCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGATTTGTCCGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGCGACTTTCCATCCGGCAATGTTAAATTCAAGTCATCACCTAATTGGCCGAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCTGCAACAAACTCAATGTATTTGATTGTTCCTCAGCCTCAAGTTGCAAGGGACAAAACTCCCAACCATCTACCATCATGAAATTTACAGCTTGTCAGAGTTTGATTAATCTTTTGAGTTGTATGCCAAAAGGTCATTTGGACACGAGATCATTTTCATGTTATGTGACTTCTATTCTGAACCTTGAAAGGATTGTTGTTGGCGGCTTATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTCTTCAGATTGTTTGTGTCCTGTCGGAAGGCCTTAAGATGTATAATTACTGCTTGTGAGGAGACAGTAGCCAGTCGAACCTCAGACACTGTACTCTTTGAGGATTTATTTCCAGTTTCTTGGCTTTACAAGTCAGTGCATATGGTTGCTGGGCTTCAAGAATCATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCCAATCATGCTGTTCGTTTCCTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGGCTGGAAAAGTGTAAACGTTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTTGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCGAACTCAACCTCTGTATAAAGGTTTTTGAAGAAGTTTCTAGTCTTCTACTACAAATGTTTATTCATGACGATAATCAGCAGTCCACAACTAGATGTCATGCCTATAATCTTCAGAAGTCAGGCTACAATTTAGATTTGTTGGGTGCAGAGAAGATTTTGCCGGAAGGCAATGATGCTGACACTGATATGGCATGTGGTGGACTGCAGGATGAATCTGCAGTTGCAGTGACGTGCTCAGCATCATCTGACATCTGTGTTGACTCTGTAATTGGTAGTGTTCATAGAAGAAGACCGCGCTTGAAAGATGCAAATAGTGTTGTTAGTGTTCTCACTGCTGTTGATTCATTTGAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATGCTAAAAGGTGATTTCCCCAACGCAGCATTTTTACTCAGGCAGTTGTTAATCGCCTCTTCTGCTATTTTGAGGCTAAATTTGCATATTAAGAGCGCTCCCATGTTGTCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCTTGTTATTGGAATCAGCGGACGCAAGTCAGGTGCCACACGTCTATTATTTTGTGTGTTTAGATGGTGTGCTGAAGTATCTGGAAGAATTAGGGAATCATTTTCCTTTCACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTAGGGAAATGCATAACTTTACAAGGGAAAAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCATAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTTGCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCAGGAAGGGTGCACAGTGAGGTATGACATATGTGCTGGAAGTGAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGGACGCAATTTGATTGTGGTTAAAAAATACATTCAGAGGTTAATTGCCTGCATGTTCAATGTTATTCTGCATTTGCAAAGTCCACTAATCTTCTATGAGAGATTCACTCAGAGTAAAGATGATAGTGATCCAGATCCAGGGACAGTCATTCTTATGTGTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTTCGTATACCTTCAGCACTTTTTCAAGATTTCCATCTGTTAAAACATTCTAAATGTCCTGTTCCAAATGATTCTTCAACAAGTCCAAATAACCAACCATCCGACCCAGTAGCAAGTGTACATGTCTCTGGTATAGATAGGCAATACTCAATCGGCCTATATTCTGGTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGTGAATGCGAGGGGTACGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTCTTTATTGTTTGGAGACATTGGATGCTGTTGTGGTAGCCAGGGAAGGCTTCTTTTCATGGGAAGTAGAAGAAGGAGTCAAATGTGCATGTTCTCTCAGAAGGATTTATGAAGAGTTAAGACATCAAAAAGAGGTCTTTGGTCCACACTGTTACCACTTTTTAGCTTATTACATACGGGTTTATTCAGGATATGGCCCCCGCAAAACAGGCATCAAAAGGGAAATAGATGAAGCTCTAAGACCAGGTGTATATGCGCTGATAGATGTTTGCTCACCTGATGATCTTCAACGTCTTCATACCTCATTTGGAGGTTGGAAAGATGGATTTCGTGATTTTAGTAATGAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACGAGAAACTTAGTGAAGCTTGTTCAAGATGTATTATCTCATGGGCTATATCAACCACACCACATTGATGGGTTTTTGAGTTTATGCAGTACTGAAAAATGCGCCACATCCAATCATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGAGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCTTTTGCAGTAGAAAGCATAGGAGTATTGTTTCATTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACCGCAAGTACCAAAATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAACGTCTACGATGTCATCTGAGAGTCGTATTGTTGAAAAAAATTATTGCTCAACTAGTTTCAATCCAGAAACACGAAAGTCGCTTCACTATTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGATGGATGTTCATTGCACACTTAAAGCTATAAATAATGTACTTTCGGTCTTTATGGATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAAGGTTTATAATATCATCATCTCATTGTCCTCCGATTTAATTCAGTTGTCAGTTACACATTCAGATAGTTTTACTCTAATAGCAAATGAGGTACTTTCTGCTGTAGGCTATCTTTTGGAAATTGAATATGATGTTCTAGAGAATGATCTGGCAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCATTGGGCTTTCTTTGGTGGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAACAGATACTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTTAGTAGAATGCTCTTTGATCAAGCATTTTCCATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

2402

Amino Acids

270.14

Weight (kDa)

6.27

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 1830 - 2043 2.2e-30 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1587, 6888
AasI GACNNNNNNGTC 2 cut(s) 1366, 2067
Acc16I TGCGCA 1 cut(s) 2010
Acc36I ACCTGC 1 cut(s) 3261
AccB1I GGYRCC 2 cut(s) 3072, 4840
AccB7I CCANNNNNTGG 1 cut(s) 2460
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 3 cut(s) 1295, 5572, 6596
AccII CGCG 2 cut(s) 2390, 4573
AccIII TCCGGA 2 cut(s) 1789, 7090
AclI AACGTT 1 cut(s) 4041
AclWI GGATC 7 cut(s) 361, 374, 2630, 3894, 5456, 5462, 5550
AcoI YGGCCR 4 cut(s) 3, 1761, 3374, 7062
AcuI CTGAAG 9 cut(s) 450, 2643, 2937, 3215, 3658, 4373, 4901, 5091, 5562
AfeI AGCGCT 3 cut(s) 1218, 4759, 6519
AfiI CCNNNNNNNGG 7 cut(s) 182, 1053, 1967, 2460, 3301, 5471, 6354
AflII CTTAAG 2 cut(s) 3385, 3703
AflIII ACRYGT 4 cut(s) 333, 684, 4846, 5686
AhlI ACTAGT 2 cut(s) 1343, 6644
AjiI CACGTC 2 cut(s) 4509, 4849
AjnI CCWGG 9 cut(s) 201, 809, 928, 1863, 5470, 5861, 6064, 6229, 7164
AjuI GAANNNNNNNTTGG 6 cut(s) 3392, 3424, 5169, 5201, 5623, 5655
AleI CACNNNNGTG 3 cut(s) 620, 3040, 5772
Alw21I GWGCWC 7 cut(s) 568, 2901, 3171, 3672, 4514, 5231, 6171
Alw26I GTCTC 9 cut(s) 25, 498, 902, 1352, 2455, 3725, 5695, 5831, 6203
Alw44I GTGCAC 2 cut(s) 564, 5227
AlwI GGATC 7 cut(s) 361, 374, 2630, 3894, 5456, 5462, 5550
AlwNI CAGNNNCTG 3 cut(s) 1826, 3758, 7127
Aor13HI TCCGGA 2 cut(s) 1789, 7090
Aor51HI AGCGCT 3 cut(s) 1218, 4759, 6519
ApaI GGGCCC 2 cut(s) 1454, 6755
ApaLI GTGCAC 2 cut(s) 564, 5227
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AseI ATTAAT 5 cut(s) 1838, 1911, 2306, 3525, 7139
Asp700I GAANNNNTTC 2 cut(s) 3104, 5275
AspLEI GCGC 9 cut(s) 1040, 1219, 2011, 2291, 4575, 4760, 6079, 6341, 6520
AsuHPI GGTGA 9 cut(s) 608, 980, 1879, 1943, 1982, 2834, 3357, 4685, 6087
AvaII GGWCC 5 cut(s) 71, 188, 2345, 2710, 5963
BaeGI GKGCMC 6 cut(s) 568, 1454, 3077, 3982, 5231, 6755
BalI TGGCCA 2 cut(s) 1763, 7064
BamHI GGATCC 1 cut(s) 366
BanI GGYRCC 2 cut(s) 3072, 4840
BanII GRGCYC 7 cut(s) 826, 1454, 3672, 4978, 5206, 6171, 6755
BarI GAAGNNNNNNTAC 2 cut(s) 4385, 4417
BauI CACGAG 1 cut(s) 3562
BbsI GAAGAC 3 cut(s) 4313, 4573, 6107
Bbv12I GWGCWC 7 cut(s) 568, 2901, 3171, 3672, 4514, 5231, 6171
BbvCI CCTCAGC 1 cut(s) 3451
BceAI ACGGC 1 cut(s) 3279
BcgI CGANNNNNNTGC 2 cut(s) 768, 802
BciT130I CCWGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
BclI TGATCA 3 cut(s) 1186, 6487, 7186
BcoDI GTCTC 9 cut(s) 25, 498, 902, 1352, 2455, 3725, 5695, 5831, 6203
BcuI ACTAGT 2 cut(s) 1343, 6644
BfmI CTRYAG 9 cut(s) 1680, 1849, 2559, 4481, 4494, 4964, 5181, 6981, 7150
BfoI RGCGCY 4 cut(s) 1220, 2292, 4761, 6521
BfrI CTTAAG 2 cut(s) 3385, 3703
BfuAI ACCTGC 1 cut(s) 3261
BglII AGATCT 2 cut(s) 2847, 4074
BlpI GCTNAGC 2 cut(s) 3960, 4513
BmcAI AGTACT 2 cut(s) 1027, 6328
Bme1390I CCNGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
Bme18I GGWCC 5 cut(s) 71, 188, 2345, 2710, 5963
BmgBI CACGTC 2 cut(s) 4509, 4849
BmrFI CCNGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
BmrI ACTGGG 1 cut(s) 5666
BmuI ACTGGG 1 cut(s) 5666
BoxI GACNNNNGTC 1 cut(s) 4833
BpiI GAAGAC 3 cut(s) 4313, 4573, 6107
BplI GAGNNNNNCTC 8 cut(s) 1532, 1564, 2888, 2920, 5425, 5457, 6833, 6865
BpmI CTGGAG 6 cut(s) 33, 224, 893, 2132, 2520, 6194
Bpu10I CCTNAGC 1 cut(s) 3451
Bpu1102I GCTNAGC 2 cut(s) 3960, 4513
BpuEI CTTGAG 8 cut(s) 639, 818, 893, 1433, 3442, 3971, 6194, 6734
BsaAI YACGTR 1 cut(s) 444
BsaBI GATNNNNATC 5 cut(s) 3849, 4073, 5460, 5466, 5598
BsaI GGTCTC 2 cut(s) 902, 6203
BsaJI CCNNGG 4 cut(s) 191, 718, 5471, 5862
BsaWI WCCGGW 3 cut(s) 1610, 1789, 7090
BsaXI ACNNNNNCTCC 4 cut(s) 4216, 4246, 5259, 5289
Bsc4I CCNNNNNNNGG 7 cut(s) 182, 1053, 1967, 2460, 3301, 5471, 6354
Bse3DI GCAATG 8 cut(s) 763, 1471, 2046, 3023, 3206, 3352, 4453, 6772
Bse8I GATNNNNATC 5 cut(s) 3849, 4073, 5460, 5466, 5598
BseAI TCCGGA 2 cut(s) 1789, 7090
BseBI CCWGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
BseDI CCNNGG 4 cut(s) 191, 718, 5471, 5862
BseJI GATNNNNATC 5 cut(s) 3849, 4073, 5460, 5466, 5598
BseLI CCNNNNNNNGG 7 cut(s) 182, 1053, 1967, 2460, 3301, 5471, 6354
BseMI GCAATG 8 cut(s) 763, 1471, 2046, 3023, 3206, 3352, 4453, 6772
BseRI GAGGAG 3 cut(s) 503, 2572, 3743
BseSI GKGCMC 6 cut(s) 568, 1454, 3077, 3982, 5231, 6755
BseYI CCCAGC 3 cut(s) 462, 3818, 5091
BsgI GTGCAG 4 cut(s) 2736, 3018, 4443, 5237
Bsh1236I CGCG 2 cut(s) 2390, 4573
BshNI GGYRCC 2 cut(s) 3072, 4840
BsiHKAI GWGCWC 7 cut(s) 568, 2901, 3171, 3672, 4514, 5231, 6171
BsiSI CCGG 5 cut(s) 1611, 1790, 3342, 4439, 7091
BslFI GGGAC 2 cut(s) 3483, 5488
BslI CCNNNNNNNGG 7 cut(s) 182, 1053, 1967, 2460, 3301, 5471, 6354
BsmAI GTCTC 9 cut(s) 25, 498, 902, 1352, 2455, 3725, 5695, 5831, 6203
BsmFI GGGAC 2 cut(s) 3483, 5488
BsmI GAATGC 6 cut(s) 1144, 2168, 3646, 5783, 6445, 7182
Bso31I GGTCTC 2 cut(s) 902, 6203
Bsp120I GGGCCC 2 cut(s) 1450, 6751
Bsp13I TCCGGA 2 cut(s) 1789, 7090
Bsp1407I TGTACA 3 cut(s) 612, 2650, 5683
Bsp1720I GCTNAGC 2 cut(s) 3960, 4513
Bsp19I CCATGG 1 cut(s) 191
BspEI TCCGGA 2 cut(s) 1789, 7090
BspFNI CGCG 2 cut(s) 2390, 4573
BspHI TCATGA 4 cut(s) 3495, 3862, 4342, 5026
BspMAI CTGCAG 3 cut(s) 4485, 4498, 5185
BspMI ACCTGC 1 cut(s) 3261
BspPI GGATC 7 cut(s) 361, 374, 2630, 3894, 5456, 5462, 5550
BspQI GCTCTTC 2 cut(s) 157, 3677
BspT107I GGYRCC 2 cut(s) 3072, 4840
BspTI CTTAAG 2 cut(s) 3385, 3703
BspTNI GGTCTC 2 cut(s) 902, 6203
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 8 cut(s) 763, 1471, 2046, 3023, 3206, 3352, 4453, 6772
BsrGI TGTACA 3 cut(s) 612, 2650, 5683
BssECI CCNNGG 4 cut(s) 191, 718, 5471, 5862
BssNAI GTATAC 1 cut(s) 5573
BssSI CACGAG 1 cut(s) 3562
BssT1I CCWWGG 2 cut(s) 191, 718
Bst1107I GTATAC 1 cut(s) 5573
Bst2BI CACGAG 1 cut(s) 3562
Bst2UI CCWGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
Bst6I CTCTTC 8 cut(s) 50, 157, 2673, 2857, 3095, 3677, 4726, 5928
BstAFI CTTAAG 2 cut(s) 3385, 3703
BstAPI GCANNNNNTGC 5 cut(s) 563, 1139, 5018, 5304, 6440
BstAUI TGTACA 3 cut(s) 612, 2650, 5683
BstBAI YACGTR 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 191
BstFNI CGCG 2 cut(s) 2390, 4573
BstH2I RGCGCY 4 cut(s) 1220, 2292, 4761, 6521
BstHHI GCGC 9 cut(s) 1040, 1219, 2011, 2291, 4575, 4760, 6079, 6341, 6520
BstMAI GTCTC 9 cut(s) 25, 498, 902, 1352, 2455, 3725, 5695, 5831, 6203
BstNI CCWGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
BstPAI GACNNNNGTC 1 cut(s) 4833
BstSCI CCNGG 9 cut(s) 201, 809, 928, 1863, 5470, 5861, 6064, 6229, 7164
BstSFI CTRYAG 9 cut(s) 1680, 1849, 2559, 4481, 4494, 4964, 5181, 6981, 7150
BstSLI GKGCMC 6 cut(s) 568, 1454, 3077, 3982, 5231, 6755
BstSNI TACGTA 1 cut(s) 444
BstUI CGCG 2 cut(s) 2390, 4573
BstV2I GAAGAC 3 cut(s) 4313, 4573, 6107
BstX2I RGATCY 5 cut(s) 366, 2847, 4074, 5467, 5542
BstXI CCANNNNNNTGG 7 cut(s) 917, 1004, 1240, 3789, 6218, 6305, 6541
BstYI RGATCY 5 cut(s) 366, 2847, 4074, 5467, 5542
BstZ17I GTATAC 1 cut(s) 5573
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 1941
BtrI CACGTC 2 cut(s) 4509, 4849
BtsI GCAGTG 5 cut(s) 313, 333, 4509, 4608, 5148
BveI ACCTGC 1 cut(s) 3261
CaiI CAGNNNCTG 3 cut(s) 1826, 3758, 7127
CciI TCATGA 4 cut(s) 3495, 3862, 4342, 5026
CfoI GCGC 9 cut(s) 1040, 1219, 2011, 2291, 4575, 4760, 6079, 6341, 6520
CseI GACGC 2 cut(s) 4838, 5346
CsiI ACCWGGT 1 cut(s) 6064
CspCI CAANNNNNGTGG 4 cut(s) 166, 201, 1971, 2006
DraI TTTAAA 2 cut(s) 4140, 4641
DrdI GACNNNNNNGTC 2 cut(s) 1366, 2067
DseDI GACNNNNNNGTC 2 cut(s) 1366, 2067
EaeI YGGCCR 4 cut(s) 3, 1761, 3374, 7062
Eam1104I CTCTTC 8 cut(s) 50, 157, 2673, 2857, 3095, 3677, 4726, 5928
EarI CTCTTC 8 cut(s) 50, 157, 2673, 2857, 3095, 3677, 4726, 5928
Ecl136II GAGCTC 2 cut(s) 3670, 6169
Eco105I TACGTA 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 191, 718
Eco147I AGGCCT 1 cut(s) 3701
Eco24I GRGCYC 7 cut(s) 826, 1454, 3672, 4978, 5206, 6171, 6755
Eco31I GGTCTC 2 cut(s) 902, 6203
Eco47I GGWCC 5 cut(s) 71, 188, 2345, 2710, 5963
Eco47III AGCGCT 3 cut(s) 1218, 4759, 6519
Eco53kI GAGCTC 2 cut(s) 3670, 6169
Eco57I CTGAAG 9 cut(s) 450, 2643, 2937, 3215, 3658, 4373, 4901, 5091, 5562
EcoICRI GAGCTC 2 cut(s) 3670, 6169
EcoO109I RGGNCCY 3 cut(s) 1451, 4192, 6752
EcoRI GAATTC 3 cut(s) 2015, 4003, 5111
EcoRII CCWGG 9 cut(s) 201, 809, 928, 1863, 5470, 5861, 6064, 6229, 7164
EcoT14I CCWWGG 2 cut(s) 191, 718
EcoT22I ATGCAT 3 cut(s) 2751, 3070, 4991
EcoT38I GRGCYC 7 cut(s) 826, 1454, 3672, 4978, 5206, 6171, 6755
ErhI CCWWGG 2 cut(s) 191, 718
FalI AAGNNNNNCTT 2 cut(s) 2190, 2222
FaqI GGGAC 2 cut(s) 3483, 5488
FauI CCCGC 1 cut(s) 6029
FauNDI CATATG 3 cut(s) 1978, 3810, 5246
FbaI TGATCA 3 cut(s) 1186, 6487, 7186
FblI GTMKAC 3 cut(s) 1295, 5572, 6596
FriOI GRGCYC 7 cut(s) 826, 1454, 3672, 4978, 5206, 6171, 6755
FspI TGCGCA 1 cut(s) 2010
GlaI GCGC 9 cut(s) 1039, 1218, 2010, 2290, 4574, 4759, 6078, 6340, 6519
GsaI CCCAGC 3 cut(s) 466, 3822, 5095
GsuI CTGGAG 6 cut(s) 33, 224, 893, 2132, 2520, 6194
HaeII RGCGCY 4 cut(s) 1220, 2292, 4761, 6521
HapII CCGG 5 cut(s) 1611, 1790, 3342, 4439, 7091
HgaI GACGC 2 cut(s) 4838, 5346
HhaI GCGC 9 cut(s) 1040, 1219, 2011, 2291, 4575, 4760, 6079, 6341, 6520
Hin6I GCGC 9 cut(s) 1038, 1217, 2009, 2289, 4573, 4758, 6077, 6339, 6518
HinP1I GCGC 9 cut(s) 1038, 1217, 2009, 2289, 4573, 4758, 6077, 6339, 6518
HincII GTYRAC 6 cut(s) 1856, 2088, 2971, 4537, 5497, 7157
HindII GTYRAC 6 cut(s) 1856, 2088, 2971, 4537, 5497, 7157
HindIII AAGCTT 6 cut(s) 953, 1732, 4774, 5805, 6254, 7033
HpaI GTTAAC 1 cut(s) 2088
HpaII CCGG 5 cut(s) 1611, 1790, 3342, 4439, 7091
HphI GGTGA 9 cut(s) 608, 980, 1879, 1943, 1982, 2834, 3357, 4685, 6087
HpyCH4IV ACGT 9 cut(s) 340, 443, 4041, 4508, 4848, 5499, 5790, 6112, 6593
HpySE526I ACGT 9 cut(s) 340, 443, 4041, 4508, 4848, 5499, 5790, 6112, 6593
HspAI GCGC 9 cut(s) 1038, 1217, 2009, 2289, 4573, 4758, 6077, 6339, 6518
Kpn2I TCCGGA 2 cut(s) 1789, 7090
Ksp22I TGATCA 3 cut(s) 1186, 6487, 7186
KspAI GTTAAC 1 cut(s) 2088
LguI GCTCTTC 2 cut(s) 157, 3677
MabI ACCWGGT 1 cut(s) 6064
MaeII ACGT 9 cut(s) 340, 443, 4041, 4508, 4848, 5499, 5790, 6112, 6593
MbiI CCGCTC 1 cut(s) 69
MfeI CAATTG 2 cut(s) 608, 5283
MflI RGATCY 5 cut(s) 366, 2847, 4074, 5467, 5542
MlsI TGGCCA 2 cut(s) 1763, 7064
MluNI TGGCCA 2 cut(s) 1763, 7064
MlyI GAGTC 8 cut(s) 500, 1321, 2258, 2457, 2871, 4532, 5907, 6622
MmeI TCCRAC 9 cut(s) 139, 530, 914, 2323, 2427, 3674, 5691, 6116, 6215
Mox20I TGGCCA 2 cut(s) 1763, 7064
Mph1103I ATGCAT 3 cut(s) 2751, 3070, 4991
MroI TCCGGA 2 cut(s) 1789, 7090
MroXI GAANNNNTTC 2 cut(s) 3104, 5275
MscI TGGCCA 2 cut(s) 1763, 7064
MslI CAYNNNNRTG 9 cut(s) 620, 1002, 3040, 3226, 3574, 4463, 5486, 5772, 6303
Msp20I TGGCCA 2 cut(s) 1763, 7064
MspA1I CMGCKG 2 cut(s) 2720, 4826
MspCI CTTAAG 2 cut(s) 3385, 3703
MspI CCGG 5 cut(s) 1611, 1790, 3342, 4439, 7091
MspR9I CCNGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
MunI CAATTG 2 cut(s) 608, 5283
Mva1269I GAATGC 6 cut(s) 1144, 2168, 3646, 5783, 6445, 7182
MvaI CCWGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
MvnI CGCG 2 cut(s) 2390, 4573
NcoI CCATGG 1 cut(s) 191
NdeI CATATG 3 cut(s) 1978, 3810, 5246
NmuCI GTSAC 5 cut(s) 336, 2260, 2822, 3583, 4504
NsbI TGCGCA 1 cut(s) 2010
NsiI ATGCAT 3 cut(s) 2751, 3070, 4991
OliI CACNNNNGTG 3 cut(s) 620, 3040, 5772
PaeI GCATGC 4 cut(s) 2753, 4203, 4666, 5528
PagI TCATGA 4 cut(s) 3495, 3862, 4342, 5026
PceI AGGCCT 1 cut(s) 3701
PciI ACATGT 3 cut(s) 333, 684, 5686
PciSI GCTCTTC 2 cut(s) 157, 3677
PctI GAATGC 6 cut(s) 1144, 2168, 3646, 5783, 6445, 7182
PdmI GAANNNNTTC 2 cut(s) 3104, 5275
PflMI CCANNNNNTGG 1 cut(s) 2460
PleI GAGTC 8 cut(s) 499, 1320, 2257, 2456, 2871, 4532, 5906, 6621
PpsI GAGTC 8 cut(s) 499, 1320, 2257, 2456, 2871, 4532, 5906, 6621
Ppu21I YACGTR 1 cut(s) 444
PscI ACATGT 3 cut(s) 333, 684, 5686
PshAI GACNNNNGTC 1 cut(s) 4833
PshBI ATTAAT 5 cut(s) 1838, 1911, 2306, 3525, 7139
PsiI TTATAA 2 cut(s) 1587, 6888
Psp124BI GAGCTC 2 cut(s) 3672, 6171
Psp1406I AACGTT 1 cut(s) 4041
Psp6I CCWGG 9 cut(s) 201, 809, 928, 1863, 5470, 5861, 6064, 6229, 7164
PspFI CCCAGC 3 cut(s) 462, 3818, 5091
PspGI CCWGG 9 cut(s) 201, 809, 928, 1863, 5470, 5861, 6064, 6229, 7164
PspOMI GGGCCC 2 cut(s) 1450, 6751
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
PstI CTGCAG 3 cut(s) 4485, 4498, 5185
PstNI CAGNNNCTG 3 cut(s) 1826, 3758, 7127
PsuI RGATCY 5 cut(s) 366, 2847, 4074, 5467, 5542
PvuII CAGCTG 1 cut(s) 2720
RseI CAYNNNNRTG 9 cut(s) 620, 1002, 3040, 3226, 3574, 4463, 5486, 5772, 6303
SacI GAGCTC 2 cut(s) 3672, 6171
SapI GCTCTTC 2 cut(s) 157, 3677
ScaI AGTACT 2 cut(s) 1027, 6328
SchI GAGTC 8 cut(s) 500, 1321, 2258, 2457, 2871, 4532, 5907, 6622
ScrFI CCNGG 9 cut(s) 203, 811, 930, 1865, 5472, 5863, 6066, 6231, 7166
SexAI ACCWGGT 1 cut(s) 6064
SfcI CTRYAG 9 cut(s) 1680, 1849, 2559, 4481, 4494, 4964, 5181, 6981, 7150
SinI GGWCC 5 cut(s) 71, 188, 2345, 2710, 5963
SmiMI CAYNNNNRTG 9 cut(s) 620, 1002, 3040, 3226, 3574, 4463, 5486, 5772, 6303
SnaBI TACGTA 1 cut(s) 444
SpeI ACTAGT 2 cut(s) 1343, 6644
SphI GCATGC 4 cut(s) 2753, 4203, 4666, 5528
SseBI AGGCCT 1 cut(s) 3701
SspI AATATT 4 cut(s) 2807, 2934, 3061, 5099
SstI GAGCTC 2 cut(s) 3672, 6171
StuI AGGCCT 1 cut(s) 3701
StyD4I CCNGG 9 cut(s) 201, 809, 928, 1863, 5470, 5861, 6064, 6229, 7164
StyI CCWWGG 2 cut(s) 191, 718
TaiI ACGT 9 cut(s) 343, 446, 4044, 4511, 4851, 5502, 5793, 6115, 6596
TaqI TCGA 5 cut(s) 281, 2482, 3745, 4212, 5196
TaqII GACCGA 2 cut(s) 1495, 6796
TauI GCSGC 2 cut(s) 94, 3624
TseFI GTSAC 5 cut(s) 336, 2260, 2822, 3583, 4504
Tsp45I GTSAC 5 cut(s) 336, 2260, 2822, 3583, 4504
TspGWI ACGGA 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 2460
Vha464I CTTAAG 2 cut(s) 3385, 3703
VneI GTGCAC 2 cut(s) 564, 5227
VpaK11BI GGWCC 5 cut(s) 71, 188, 2345, 2710, 5963
VspI ATTAAT 5 cut(s) 1838, 1911, 2306, 3525, 7139
XbaI TCTAGA 2 cut(s) 1714, 7015
XcmI CCANNNNNNNNNTGG 1 cut(s) 3036
XmiI GTMKAC 3 cut(s) 1295, 5572, 6596
XmnI GAANNNNTTC 2 cut(s) 3104, 5275
ZrmI AGTACT 2 cut(s) 1027, 6328
Zsp2I ATGCAT 3 cut(s) 2751, 3070, 4991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.