Rorug05G0514400

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000376
Physical Location & Seq
Forward (+)
69970252 .. 69971078
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0514400.1

Sequence Viewer

Length: 396 bp
ATGAGTTCTGGAGATAATTCGTGGGAAGGTGATATAGAAGGACTAAGTGGTTCTACTAATGGTACATGCAAAACTACCAAAGTACGTGGTAAAGGAACGTGTACTTGGATGGAAGATAATAAAAAAGAATTCCTTGAGTTCAATTCTATGGGTGTTAGTCCAACTATTGAATGGAAACCTGAAGATGTTCCTCGTATGCCTCTCATAAAGCATAACAAAATGGAAAGAGTTGCTAAATATTGGAGAAACTACAAGAATAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGAACGTTGGGTGTGTGAGAATAAAGATGTGGACGCAGCTGAATGGCGCGAAATGATGAAATATTGGGATAAAGAAAGGACAACAGAAATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

131

Amino Acids

15.4

Weight (kDa)

8.38

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 348
AclI AACGTT 1 cut(s) 304
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 3 cut(s) 64, 84, 103
AfiI CCNNNNNNNGG 1 cut(s) 290
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 142, 170
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 272, 338
AluI AGCT 2 cut(s) 272, 338
AlwI GGATC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 41
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 103
BfrI CTTAAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 290
Bsp143I GATC 1 cut(s) 280
BspFNI CGCG 1 cut(s) 348
BspPI GGATC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 263
BssMI GATC 1 cut(s) 280
BstAFI CTTAAG 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 44, 393
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 69
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 114
CfoI GCGC 1 cut(s) 348
CseI GACGC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 63, 83, 102
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 1 cut(s) 66
CviJI RGCY 2 cut(s) 272, 338
CviKI_1 RGCY 2 cut(s) 272, 338
CviQI GTAC 3 cut(s) 63, 83, 102
DdeI CTNAG 2 cut(s) 44, 393
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 128
FaeI CATG 1 cut(s) 69
FaiI YATR 7 cut(s) 35, 67, 149, 197, 206, 213, 279
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 336
GlaI GCGC 1 cut(s) 347
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 30
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 102, 331
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 102, 331
HpyAV CCTTC 2 cut(s) 20, 32
HpyCH4IV ACGT 3 cut(s) 85, 98, 304
HpyCH4V TGCA 1 cut(s) 69
HpyF3I CTNAG 2 cut(s) 44, 393
HpySE526I ACGT 3 cut(s) 85, 98, 304
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 2 cut(s) 192, 312
Lsp1109I GCAGC 1 cut(s) 347
MaeII ACGT 3 cut(s) 85, 98, 304
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 125, 194
MluCI AATT 4 cut(s) 16, 128, 142, 387
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 2 cut(s) 201, 210
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 263
MvnI CGCG 1 cut(s) 348
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 69
NspI RCATGY 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 337
Ppu21I YACGTR 1 cut(s) 86
Psp1406I AACGTT 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 3 cut(s) 64, 84, 103
RsaNI GTAC 3 cut(s) 63, 83, 102
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 280
SetI ASST 7 cut(s) 31, 88, 101, 181, 274, 307, 340
SmlI CTYRAG 2 cut(s) 134, 263
SmoI CTYRAG 2 cut(s) 134, 263
Sse9I AATT 4 cut(s) 16, 128, 142, 387
SspI AATATT 2 cut(s) 239, 362
TaiI ACGT 3 cut(s) 88, 101, 307
TasI AATT 4 cut(s) 16, 128, 142, 387
TatI WGTACW 1 cut(s) 101
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 371
Vha464I CTTAAG 1 cut(s) 263
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.