Rh6DG023100

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Reverse (-)
1998108 .. 2006341
8234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG023100.1

Sequence Viewer

Length: 5988 bp
ATGAATGAGGGATGCAAATGCAGGAAGGTGGAACTAGCTCATGGTTTTGTGATGTCGAGAGGGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGCAGTGAACATGTCACGTTTAATAATATTTGTCAGTGAGTGGATCCAGTCATTGTTGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCTGAAGTTATTTATACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTCTGAAATTAAATGTTTCTTTAACTTTCTCACGGAACCTTTTACGCTCTATATGTTGGATTGCAAGAAGTGCACTGTCCTCATTGAACAAAACATTTATTGGTGAAGGGTTACAATTGTACACTACTGTGCTTGATTGTATTTCTTTGGTATTTTCATCCCAAGAAGGCTTCTCAAATGAAAATTTAGACATGTGGATTTCAACTGTAAGTTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCTCTTGTTTGTGGCAATGAGGGTGTATTTGTTTTCCGATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAGGGCTCACGCAGCTCGGAAAGATGGATTTCGTGATTTTAGTAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTGTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACGAGAAACTTAGTGAAGCTTGTTGAAGATGTATTATCACATGGGCTATATCACCCACTCCACATTGATGGGTTTTTGAGTTTATGCTGTACTGAAAAATGCGCCACATCCAATCATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGAGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCTTTTGCAGTAGAAAGCATAGGAGTATTGTTTCATTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACTGCAAGTTCCAAAATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAATGTCTACGATGTCGTCTGAGAGTCGTATTGTTGAAAAAAATTATTGCTCAACTAGTTTCAATCCAGAGACACGAAAGTCGCTTCACTATTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGCGGGCCCTGAATTGATGGATGTTCATTGCACTCTTAAAGCTATAAATAATGTACTTTCGGTCTTTGTGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAAGGTTTATAATATCATCATCTCATTGTCCTCCGGTTTAATTCAGTTGTCAGTTACACACTCAGATAGTATTCCTCTAATAGCAAATGAGGTACTTTCTGCTGTAGGCTATCTTTTGGAAATTGAATATGATGTTCTAGAGAATGATCTGGTAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCATTGGGCTTTCTTTGGTGGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAACAGATACTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTGAATAATACTATCTTTGCATTGTGTAAAGCAGTAAGGGTTATTAATTTACATAATAGTGATGGTGAACTGAACTATACTAGATTTGTCATTCCTTTTCATGGTGAAGCATATGCAAAAGCTGTGGAAACACTATTATCTGCGCACGAATTCAAAATTGCAATCCATAAAGCAATGAAGTCCATACCAGAAGGACAAGCAAGTCAGTGTATTCGGCAGTTAACATTGGATATATCAGAATCTCTGGAGTGGATGAAAGTTAGTTGTTCGGAGGCTGATGAAAAAGAATTTTCTGAATGCCATCTAAGTAGCTTGCACAGTTTTAATCTGGAAGCTGAACTTTACGGGAGAGGGTTGTCAGAAATATATGCACTATTCCTAGAGTCATTGATTGTCACAACTGGAAACTGTAACCTTCTTGGCGCTTCTATAAAGGAATTAATTAGAGTGATTTTCCCTTGCATGAGCAATCTGGTTGGACCACAGCAGGAGGATGCTGTAAACAAATTCCTATGGTCTGTCGCGGTAAAAGATTCCGACAATGTGATCGCTAGAAAGAAAAACAAATATCTGATATTTGGAGTCTCCACTTATTGGGTAGTTTTGTTCTTCTTTCGATTGTATAGCTCCTGCCGATGCTTATATAGGCAAGCAGCAATCCTTATGCCTCCAGATTTATCAAGAAAGATGTCTGTAGAAATGGGAGATTCGTTCTCCTCATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTTCTTTCTGTGATTCAATCTGTTTCAAACATCTTTTGTAAGGACTGTGCAGCTGATTCTTGTCCTTTAACTTATGTAATGCATGCTATGGCTTGTGAAAGGCTTGTGGATTTGAATAGTCGTATAAAGTCTTTTGAATATTTGATTGGAAATGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAAGAGGCAGCAGGACTCACCGGATTCATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACGACTAATAATAAGATGGTTAACTATGAAAGTGATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCATGCCTCTAAAATGGATTTGAAGAGATTCCTTTCTCTTTTAATCCATACTTCAATTCCCTATGTAAGAAGCAGCTTTGGGGTGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGGCATTGCATCAAATCTCATCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGATTTGTCCGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGCGACTTTCCATCCGGCAATGTTAAATTCAAATCATCACCTAATTGGCCGAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCTACAACAAACTCAATGTATCTGATTGTTCCTCAGCCTCAAGTTGCAAGGGACAAAACTCCCAACCATCAACCATCATGAAATTTACAGCTTGTCAGAGTTTGCTTAATCTTTTGACTTGTATGCCAAAAGGTCATTTGGACACGAGATCATTTTCACGTTATGTGACTTCTATTCTGAACCTCGAAAGGATTGTTGTTGGCGGCTTATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTCTTCAGATTGTTTGTGTCCTGTCGGAAGGCCTTAAGATGTATAATTACTGCTTGTGAGGAGACAGTAGCCAGTCGAACCTCAGACACTGTACTCTTTGAGGATTTATTTCCAGTTTCATGGCTTTACAAGTCAGTGCATATGGTTGCTGGGCTTCAAGAATCATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCCAATCATGCTGTTCGTTTCCTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGGCTGGAAAAGTGTAAACGTTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTTGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCGAACTCAACCTCTGTATAAAGGTTTTTGAAGAAGTTTCTAGTCTTCTACTACAAATGTTTATTCTTGACGATAATCAGCAGTCCACAACTATATGTCATGCCTATAATCTTAAGAAGTCAGGCTACAATTTAGATTTGTCGGGTGCAGTGAAGATTTTGCCGGAAGGCAATGATGCTGACACTGATATGGCATGTGGTGGACTGCAAGATGAATCTGCAGTTGCAGTGACGTGCTCAGCATTATCTGACATCTGTGTTGACTCTGTAATTGGTAGTGTTCATAGAAGAAGACCGCGCTTGAAAGATGCAAATAGTGTTGTTAGTGTTCTCACTGCTGTTGATTCATTTGAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATGCTAAAAGGTGATTTCCCCAACGCAGCATTTTTACTCAGGCAGTTGTTAATCGCCTCTTCTGCTATTTTGAGGCTAAATTTGCATATTAAGAGCGCTCCCATGTTGTCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCTTGTTATTGGAATCAACGGACGCAAGTCAGGTGCCACACTTCTATTATTTTGTGTGTTTAGATGGTGTGCTGAAGTATCTGGAAGAATTAGGGAATCATTTTCCTTTCACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTAGGGAAATGCATAACTTTACAAGGGAAAAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCATAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTTGCTGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCAGGAAGGGTGCACAGTGAGGTATGACATATGTGCTGGAAGTGAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGGACGCAATTTGATTGCGGTTAAAAAATACATTCAGAGGTTAATTGCCTGCATGTTCAATGTTATTCTGCATTTGCAAAGTCCACTAATCTTCTATGAGAGATTCACTCAGAGTAAAGATGATAGTGATCCAGATCCAGGGACAGTCATTCTTATGTGTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTACGTATACCTTCAGCACTTTTTCAAGATTTCCATCTGTTAAAACATTCTAAATGTCCTGTTCCAAATGATTCTTCAACAAGTCCAAATAACCAACCATCCGACCCAGTAGCAAGTGTACATGTCTCTGGTATAGATAGGCAATACTCAATCGGCCTATATTCTGGTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGTGAATGCGAGGGGTACGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTCTTTATTGTTTGGAGACATTGGATGCTGTTGTGGTAGCCAGGGAAGGCTTCTTTTCATGGGAAGTAGAAGAAGGAGTCAAATGTGCATGTTCTCTCAGAAGGATTTATGAAGAGTTAAGACATCAAAAAGAGGTCTTTGGTCCACACTGTTACCACTTTTTAGCTTATTACATACGGGTTTATTCAGGATATGGCCCCCGCAAAACAGGCATCAAAAGGGAAATAGATGAAGCTCTAAGACCAGGTGTATATGCCCTGATAGATGTTTGCTCACCTGATGATCTTCAACGTCTTCATACCTCATTTGGAGAGGGTCCTTGCAGAAACACTTTGGCAATCTTGAAGCACGATTACGAACTCAATTTCCAGTACCAGGGAAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

1995

Amino Acids

224.18

Weight (kDa)

6.4

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 1756 - 1994 6e-37 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1362
AasI GACNNNNNNGTC 2 cut(s) 1141, 1842
Acc16I TGCGCA 1 cut(s) 1785
Acc36I ACCTGC 1 cut(s) 3039
AccB1I GGYRCC 2 cut(s) 2847, 4618
AccB7I CCANNNNNTGG 1 cut(s) 2235
AccI GTMKAC 2 cut(s) 1070, 5350
AccII CGCG 2 cut(s) 2165, 4351
AccIII TCCGGA 1 cut(s) 1564
AciI CCGC 8 cut(s) 1223, 2165, 2618, 3046, 3399, 4349, 5129, 5800
AclI AACGTT 1 cut(s) 3819
AclWI GGATC 7 cut(s) 136, 149, 2405, 3672, 5234, 5240, 5328
AcoI YGGCCR 2 cut(s) 1536, 3152
AcuI CTGAAG 8 cut(s) 225, 2418, 2712, 2993, 3436, 4679, 4869, 5340
AfeI AGCGCT 2 cut(s) 993, 4537
AfiI CCNNNNNNNGG 6 cut(s) 828, 1742, 2235, 3079, 5249, 5974
AflII CTTAAG 3 cut(s) 3163, 3481, 4166
AflIII ACRYGT 3 cut(s) 108, 459, 5464
AhlI ACTAGT 1 cut(s) 1118
AjiI CACGTC 1 cut(s) 4287
AjnI CCWGG 7 cut(s) 584, 703, 1638, 5248, 5639, 5842, 5973
AjuI GAANNNNNNNTTGG 8 cut(s) 2571, 2603, 3170, 3202, 4947, 4979, 5401, 5433
AleI CACNNNNGTG 3 cut(s) 395, 2815, 5550
AloI GAACNNNNNNTCC 2 cut(s) 5949, 5981
Alw21I GWGCWC 6 cut(s) 343, 2676, 2949, 3450, 4292, 5009
Alw26I GTCTC 6 cut(s) 273, 1127, 2230, 3503, 5473, 5609
Alw44I GTGCAC 2 cut(s) 339, 5005
AlwI GGATC 7 cut(s) 136, 149, 2405, 3672, 5234, 5240, 5328
AlwNI CAGNNNCTG 2 cut(s) 1601, 3536
Aor13HI TCCGGA 1 cut(s) 1564
Aor51HI AGCGCT 2 cut(s) 993, 4537
AoxI GGCC 7 cut(s) 1225, 1536, 3152, 3477, 3970, 5497, 5794
ApaI GGGCCC 1 cut(s) 1229
ApaLI GTGCAC 2 cut(s) 339, 5005
ApeKI GCWGC 9 cut(s) 78, 605, 905, 2294, 2492, 2645, 2925, 4466, 5514
AseI ATTAAT 3 cut(s) 1613, 1686, 2081
Asp700I GAANNNNTTC 2 cut(s) 2879, 5053
AspLEI GCGC 6 cut(s) 815, 994, 1786, 2066, 4353, 4538
AspS9I GGNCC 7 cut(s) 1225, 1226, 2120, 3970, 5741, 5795, 5915
AvaII GGWCC 3 cut(s) 2120, 5741, 5915
BaeGI GKGCMC 5 cut(s) 343, 1229, 2852, 3760, 5009
BalI TGGCCA 1 cut(s) 1538
BamHI GGATCC 1 cut(s) 141
BanI GGYRCC 2 cut(s) 2847, 4618
BanII GRGCYC 5 cut(s) 601, 1229, 3450, 4756, 4984
BarI GAAGNNNNNNTAC 4 cut(s) 4163, 4195, 5936, 5968
BauI CACGAG 1 cut(s) 3340
BbsI GAAGAC 3 cut(s) 4091, 4351, 5885
Bbv12I GWGCWC 6 cut(s) 343, 2676, 2949, 3450, 4292, 5009
BbvCI CCTCAGC 1 cut(s) 3229
BbvI GCAGC 9 cut(s) 90, 617, 892, 2306, 2504, 2657, 2937, 4478, 5501
BceAI ACGGC 1 cut(s) 3057
BcgI CGANNNNNNTGC 2 cut(s) 543, 577
BciT130I CCWGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
BclI TGATCA 1 cut(s) 961
BcoDI GTCTC 6 cut(s) 273, 1127, 2230, 3503, 5473, 5609
BcuI ACTAGT 1 cut(s) 1118
BfmI CTRYAG 6 cut(s) 1455, 1624, 2334, 4272, 4742, 4959
BfoI RGCGCY 3 cut(s) 995, 2067, 4539
BfrI CTTAAG 3 cut(s) 3163, 3481, 4166
BfuAI ACCTGC 1 cut(s) 3039
BglII AGATCT 2 cut(s) 2622, 3852
BlpI GCTNAGC 2 cut(s) 3738, 4291
Bme1390I CCNGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
Bme18I GGWCC 3 cut(s) 2120, 5741, 5915
BmgBI CACGTC 1 cut(s) 4287
BmgT120I GGNCC 7 cut(s) 1225, 1226, 2120, 3970, 5741, 5795, 5915
BmiI GGNNCC 9 cut(s) 143, 305, 1176, 1227, 2849, 3971, 4620, 5797, 5916
BmrFI CCNGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
BmrI ACTGGG 1 cut(s) 5444
BmuI ACTGGG 1 cut(s) 5444
BoxI GACNNNNGTC 1 cut(s) 4611
BpiI GAAGAC 3 cut(s) 4091, 4351, 5885
BplI GAGNNNNNCTC 6 cut(s) 1307, 1339, 2663, 2695, 5203, 5235
BpmI CTGGAG 3 cut(s) 668, 1907, 2295
Bpu10I CCTNAGC 1 cut(s) 3229
Bpu1102I GCTNAGC 2 cut(s) 3738, 4291
BpuEI CTTGAG 5 cut(s) 593, 668, 1208, 3220, 3749
BsaAI YACGTR 2 cut(s) 219, 5348
BsaBI GATNNNNATC 5 cut(s) 3627, 3851, 5238, 5244, 5376
BsaJI CCNNGG 4 cut(s) 493, 5249, 5640, 5974
BsaWI WCCGGW 3 cut(s) 1385, 1564, 2657
BsaXI ACNNNNNCTCC 4 cut(s) 3994, 4024, 5037, 5067
Bsc4I CCNNNNNNNGG 6 cut(s) 828, 1742, 2235, 3079, 5249, 5974
Bse1I ACTGG 9 cut(s) 145, 1606, 2047, 3021, 3519, 3560, 5286, 5450, 5968
Bse3DI GCAATG 7 cut(s) 538, 1246, 1821, 2798, 2984, 3130, 4231
Bse8I GATNNNNATC 5 cut(s) 3627, 3851, 5238, 5244, 5376
BseAI TCCGGA 1 cut(s) 1564
BseBI CCWGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
BseDI CCNNGG 4 cut(s) 493, 5249, 5640, 5974
BseJI GATNNNNATC 5 cut(s) 3627, 3851, 5238, 5244, 5376
BseLI CCNNNNNNNGG 6 cut(s) 828, 1742, 2235, 3079, 5249, 5974
BseMI GCAATG 7 cut(s) 538, 1246, 1821, 2798, 2984, 3130, 4231
BseNI ACTGG 9 cut(s) 145, 1606, 2047, 3021, 3519, 3560, 5286, 5450, 5968
BseRI GAGGAG 3 cut(s) 278, 2347, 3521
BseSI GKGCMC 5 cut(s) 343, 1229, 2852, 3760, 5009
BseXI GCAGC 9 cut(s) 90, 617, 892, 2306, 2504, 2657, 2937, 4478, 5501
BseYI CCCAGC 3 cut(s) 237, 3596, 4869
BsgI GTGCAG 4 cut(s) 2511, 2793, 4221, 5015
Bsh1236I CGCG 2 cut(s) 2165, 4351
BshFI GGCC 7 cut(s) 1227, 1538, 3154, 3479, 3972, 5499, 5796
BshNI GGYRCC 2 cut(s) 2847, 4618
BsiHKAI GWGCWC 6 cut(s) 343, 2676, 2949, 3450, 4292, 5009
BsiSI CCGG 5 cut(s) 1386, 1565, 2658, 3120, 4217
BslFI GGGAC 2 cut(s) 3261, 5266
BslI CCNNNNNNNGG 6 cut(s) 828, 1742, 2235, 3079, 5249, 5974
BsmAI GTCTC 6 cut(s) 273, 1127, 2230, 3503, 5473, 5609
BsmFI GGGAC 2 cut(s) 3261, 5266
BsmI GAATGC 4 cut(s) 919, 1943, 3424, 5561
BsnI GGCC 7 cut(s) 1227, 1538, 3154, 3479, 3972, 5499, 5796
Bsp120I GGGCCC 1 cut(s) 1225
Bsp13I TCCGGA 1 cut(s) 1564
Bsp1407I TGTACA 3 cut(s) 387, 2425, 5461
Bsp1720I GCTNAGC 2 cut(s) 3738, 4291
BspACI CCGC 8 cut(s) 1223, 2165, 2618, 3046, 3399, 4349, 5129, 5800
BspANI GGCC 7 cut(s) 1227, 1538, 3154, 3479, 3972, 5499, 5796
BspEI TCCGGA 1 cut(s) 1564
BspFNI CGCG 2 cut(s) 2165, 4351
BspHI TCATGA 4 cut(s) 2664, 3273, 3640, 4804
BspLI GGNNCC 9 cut(s) 143, 305, 1176, 1227, 2849, 3971, 4620, 5797, 5916
BspMAI CTGCAG 2 cut(s) 4276, 4963
BspMI ACCTGC 1 cut(s) 3039
BspPI GGATC 7 cut(s) 136, 149, 2405, 3672, 5234, 5240, 5328
BspQI GCTCTTC 1 cut(s) 3455
BspT107I GGYRCC 2 cut(s) 2847, 4618
BspTI CTTAAG 3 cut(s) 3163, 3481, 4166
BsrDI GCAATG 7 cut(s) 538, 1246, 1821, 2798, 2984, 3130, 4231
BsrGI TGTACA 3 cut(s) 387, 2425, 5461
BsrI ACTGG 9 cut(s) 145, 1606, 2047, 3021, 3519, 3560, 5286, 5450, 5968
BssECI CCNNGG 4 cut(s) 493, 5249, 5640, 5974
BssNAI GTATAC 1 cut(s) 5351
BssSI CACGAG 1 cut(s) 3340
BssT1I CCWWGG 1 cut(s) 493
Bst1107I GTATAC 1 cut(s) 5351
Bst2BI CACGAG 1 cut(s) 3340
Bst2UI CCWGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
Bst6I CTCTTC 6 cut(s) 2448, 2632, 2870, 3455, 4504, 5706
BstAFI CTTAAG 3 cut(s) 3163, 3481, 4166
BstAPI GCANNNNNTGC 4 cut(s) 338, 914, 4796, 5082
BstAUI TGTACA 3 cut(s) 387, 2425, 5461
BstBAI YACGTR 2 cut(s) 219, 5348
BstFNI CGCG 2 cut(s) 2165, 4351
BstH2I RGCGCY 3 cut(s) 995, 2067, 4539
BstHHI GCGC 6 cut(s) 815, 994, 1786, 2066, 4353, 4538
BstMAI GTCTC 6 cut(s) 273, 1127, 2230, 3503, 5473, 5609
BstNI CCWGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
BstPAI GACNNNNGTC 1 cut(s) 4611
BstSCI CCNGG 7 cut(s) 584, 703, 1638, 5248, 5639, 5842, 5973
BstSFI CTRYAG 6 cut(s) 1455, 1624, 2334, 4272, 4742, 4959
BstSLI GKGCMC 5 cut(s) 343, 1229, 2852, 3760, 5009
BstSNI TACGTA 2 cut(s) 219, 5348
BstUI CGCG 2 cut(s) 2165, 4351
BstV1I GCAGC 9 cut(s) 90, 617, 892, 2306, 2504, 2657, 2937, 4478, 5501
BstV2I GAAGAC 3 cut(s) 4091, 4351, 5885
BstX2I RGATCY 5 cut(s) 141, 2622, 3852, 5245, 5320
BstXI CCANNNNNNTGG 4 cut(s) 692, 779, 1015, 3567
BstYI RGATCY 5 cut(s) 141, 2622, 3852, 5245, 5320
BstZ17I GTATAC 1 cut(s) 5351
BsuRI GGCC 7 cut(s) 1227, 1538, 3154, 3479, 3972, 5499, 5796
BtrI CACGTC 1 cut(s) 4287
BtsI GCAGTG 5 cut(s) 88, 108, 4209, 4287, 4386
BveI ACCTGC 1 cut(s) 3039
CaiI CAGNNNCTG 2 cut(s) 1601, 3536
CciI TCATGA 4 cut(s) 2664, 3273, 3640, 4804
CfoI GCGC 6 cut(s) 815, 994, 1786, 2066, 4353, 4538
Cfr13I GGNCC 7 cut(s) 1225, 1226, 2120, 3970, 5741, 5795, 5915
CseI GACGC 2 cut(s) 4616, 5124
CsiI ACCWGGT 1 cut(s) 5842
CspCI CAANNNNNGTGG 2 cut(s) 1746, 1781
DraI TTTAAA 2 cut(s) 3918, 4419
DrdI GACNNNNNNGTC 2 cut(s) 1141, 1842
DseDI GACNNNNNNGTC 2 cut(s) 1141, 1842
EaeI YGGCCR 2 cut(s) 1536, 3152
Eam1104I CTCTTC 6 cut(s) 2448, 2632, 2870, 3455, 4504, 5706
EarI CTCTTC 6 cut(s) 2448, 2632, 2870, 3455, 4504, 5706
Ecl136II GAGCTC 1 cut(s) 3448
Eco105I TACGTA 2 cut(s) 219, 5348
Eco130I CCWWGG 1 cut(s) 493
Eco147I AGGCCT 1 cut(s) 3479
Eco24I GRGCYC 5 cut(s) 601, 1229, 3450, 4756, 4984
Eco47I GGWCC 3 cut(s) 2120, 5741, 5915
Eco47III AGCGCT 2 cut(s) 993, 4537
Eco53kI GAGCTC 1 cut(s) 3448
Eco57I CTGAAG 8 cut(s) 225, 2418, 2712, 2993, 3436, 4679, 4869, 5340
EcoICRI GAGCTC 1 cut(s) 3448
EcoO109I RGGNCCY 3 cut(s) 1226, 3970, 5915
EcoRI GAATTC 3 cut(s) 1790, 3781, 4889
EcoRII CCWGG 7 cut(s) 584, 703, 1638, 5248, 5639, 5842, 5973
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 3 cut(s) 2526, 2845, 4769
EcoT38I GRGCYC 5 cut(s) 601, 1229, 3450, 4756, 4984
ErhI CCWWGG 1 cut(s) 493
FalI AAGNNNNNCTT 2 cut(s) 1965, 1997
FaqI GGGAC 2 cut(s) 3261, 5266
FauI CCCGC 2 cut(s) 1216, 5807
FauNDI CATATG 3 cut(s) 1753, 3588, 5024
FbaI TGATCA 1 cut(s) 961
FblI GTMKAC 2 cut(s) 1070, 5350
FriOI GRGCYC 5 cut(s) 601, 1229, 3450, 4756, 4984
FspI TGCGCA 1 cut(s) 1785
GlaI GCGC 6 cut(s) 814, 993, 1785, 2065, 4352, 4537
GsaI CCCAGC 3 cut(s) 241, 3600, 4873
GsuI CTGGAG 3 cut(s) 668, 1907, 2295
HaeII RGCGCY 3 cut(s) 995, 2067, 4539
HaeIII GGCC 7 cut(s) 1227, 1538, 3154, 3479, 3972, 5499, 5796
HapII CCGG 5 cut(s) 1386, 1565, 2658, 3120, 4217
HgaI GACGC 2 cut(s) 4616, 5124
HhaI GCGC 6 cut(s) 815, 994, 1786, 2066, 4353, 4538
Hin6I GCGC 6 cut(s) 813, 992, 1784, 2064, 4351, 4536
HinP1I GCGC 6 cut(s) 813, 992, 1784, 2064, 4351, 4536
HincII GTYRAC 5 cut(s) 1631, 1863, 2746, 4315, 5275
HindII GTYRAC 5 cut(s) 1631, 1863, 2746, 4315, 5275
HindIII AAGCTT 4 cut(s) 728, 1507, 4552, 5583
HpaI GTTAAC 2 cut(s) 1863, 2746
HpaII CCGG 5 cut(s) 1386, 1565, 2658, 3120, 4217
HpyCH4IV ACGT 9 cut(s) 115, 218, 3355, 3819, 4286, 5277, 5347, 5568, 5890
HpySE526I ACGT 9 cut(s) 115, 218, 3355, 3819, 4286, 5277, 5347, 5568, 5890
HspAI GCGC 6 cut(s) 813, 992, 1784, 2064, 4351, 4536
Kpn2I TCCGGA 1 cut(s) 1564
Ksp22I TGATCA 1 cut(s) 961
KspAI GTTAAC 2 cut(s) 1863, 2746
LguI GCTCTTC 1 cut(s) 3455
LmnI GCTCC 6 cut(s) 648, 1174, 1331, 2273, 2671, 4543
Lsp1109I GCAGC 9 cut(s) 90, 617, 892, 2306, 2504, 2657, 2937, 4478, 5501
MabI ACCWGGT 1 cut(s) 5842
MaeII ACGT 9 cut(s) 115, 218, 3355, 3819, 4286, 5277, 5347, 5568, 5890
MfeI CAATTG 2 cut(s) 383, 5061
MflI RGATCY 5 cut(s) 141, 2622, 3852, 5245, 5320
MlsI TGGCCA 1 cut(s) 1538
MluNI TGGCCA 1 cut(s) 1538
MlyI GAGTC 7 cut(s) 275, 1096, 2033, 2232, 2646, 4310, 5685
MmeI TCCRAC 6 cut(s) 305, 689, 2098, 2202, 3452, 5469
Mox20I TGGCCA 1 cut(s) 1538
Mph1103I ATGCAT 3 cut(s) 2526, 2845, 4769
MroI TCCGGA 1 cut(s) 1564
MroXI GAANNNNTTC 2 cut(s) 2879, 5053
MscI TGGCCA 1 cut(s) 1538
MslI CAYNNNNRTG 8 cut(s) 395, 777, 1698, 2815, 3004, 4241, 5264, 5550
Msp20I TGGCCA 1 cut(s) 1538
MspA1I CMGCKG 1 cut(s) 2495
MspCI CTTAAG 3 cut(s) 3163, 3481, 4166
MspI CCGG 5 cut(s) 1386, 1565, 2658, 3120, 4217
MspR9I CCNGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
MunI CAATTG 2 cut(s) 383, 5061
Mva1269I GAATGC 4 cut(s) 919, 1943, 3424, 5561
MvaI CCWGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
MvnI CGCG 2 cut(s) 2165, 4351
NdeI CATATG 3 cut(s) 1753, 3588, 5024
NlaIV GGNNCC 9 cut(s) 143, 305, 1176, 1227, 2849, 3971, 4620, 5797, 5916
NmuCI GTSAC 5 cut(s) 111, 2035, 2597, 3361, 4282
NsbI TGCGCA 1 cut(s) 1785
NsiI ATGCAT 3 cut(s) 2526, 2845, 4769
OliI CACNNNNGTG 3 cut(s) 395, 2815, 5550
PaeI GCATGC 4 cut(s) 2528, 3981, 4444, 5306
PagI TCATGA 4 cut(s) 2664, 3273, 3640, 4804
PceI AGGCCT 1 cut(s) 3479
PciI ACATGT 3 cut(s) 108, 459, 5464
PciSI GCTCTTC 1 cut(s) 3455
PctI GAATGC 4 cut(s) 919, 1943, 3424, 5561
PdmI GAANNNNTTC 2 cut(s) 2879, 5053
PflMI CCANNNNNTGG 1 cut(s) 2235
PleI GAGTC 7 cut(s) 274, 1095, 2032, 2231, 2646, 4310, 5684
PpsI GAGTC 7 cut(s) 274, 1095, 2032, 2231, 2646, 4310, 5684
Ppu21I YACGTR 2 cut(s) 219, 5348
PpuMI RGGWCCY 1 cut(s) 5915
PscI ACATGT 3 cut(s) 108, 459, 5464
PshAI GACNNNNGTC 1 cut(s) 4611
PshBI ATTAAT 3 cut(s) 1613, 1686, 2081
PsiI TTATAA 1 cut(s) 1362
Psp124BI GAGCTC 1 cut(s) 3450
Psp1406I AACGTT 1 cut(s) 3819
Psp5II RGGWCCY 1 cut(s) 5915
Psp6I CCWGG 7 cut(s) 584, 703, 1638, 5248, 5639, 5842, 5973
PspFI CCCAGC 3 cut(s) 237, 3596, 4869
PspGI CCWGG 7 cut(s) 584, 703, 1638, 5248, 5639, 5842, 5973
PspN4I GGNNCC 9 cut(s) 143, 305, 1176, 1227, 2849, 3971, 4620, 5797, 5916
PspOMI GGGCCC 1 cut(s) 1225
PspPI GGNCC 7 cut(s) 1225, 1226, 2120, 3970, 5741, 5795, 5915
PspPPI RGGWCCY 1 cut(s) 5915
PsrI GAACNNNNNNTAC 2 cut(s) 468, 500
PstI CTGCAG 2 cut(s) 4276, 4963
PstNI CAGNNNCTG 2 cut(s) 1601, 3536
PsuI RGATCY 5 cut(s) 141, 2622, 3852, 5245, 5320
PvuII CAGCTG 1 cut(s) 2495
RseI CAYNNNNRTG 8 cut(s) 395, 777, 1698, 2815, 3004, 4241, 5264, 5550
SacI GAGCTC 1 cut(s) 3450
SapI GCTCTTC 1 cut(s) 3455
Sau96I GGNCC 7 cut(s) 1225, 1226, 2120, 3970, 5741, 5795, 5915
SchI GAGTC 7 cut(s) 275, 1096, 2033, 2232, 2646, 4310, 5685
ScrFI CCNGG 7 cut(s) 586, 705, 1640, 5250, 5641, 5844, 5975
SexAI ACCWGGT 1 cut(s) 5842
SfcI CTRYAG 6 cut(s) 1455, 1624, 2334, 4272, 4742, 4959
SinI GGWCC 3 cut(s) 2120, 5741, 5915
SmiMI CAYNNNNRTG 8 cut(s) 395, 777, 1698, 2815, 3004, 4241, 5264, 5550
SmlI CTYRAG 8 cut(s) 572, 647, 1187, 3163, 3235, 3481, 3728, 4166
SmoI CTYRAG 8 cut(s) 572, 647, 1187, 3163, 3235, 3481, 3728, 4166
SnaBI TACGTA 2 cut(s) 219, 5348
SpeI ACTAGT 1 cut(s) 1118
SphI GCATGC 4 cut(s) 2528, 3981, 4444, 5306
SseBI AGGCCT 1 cut(s) 3479
SsiI CCGC 8 cut(s) 1223, 2165, 2618, 3046, 3399, 4349, 5129, 5800
SspI AATATT 5 cut(s) 126, 2582, 2709, 2836, 4877
SstI GAGCTC 1 cut(s) 3450
StuI AGGCCT 1 cut(s) 3479
StyD4I CCNGG 7 cut(s) 584, 703, 1638, 5248, 5639, 5842, 5973
StyI CCWWGG 1 cut(s) 493
TaiI ACGT 9 cut(s) 118, 221, 3358, 3822, 4289, 5280, 5350, 5571, 5893
TaqI TCGA 6 cut(s) 56, 2257, 3381, 3523, 3990, 4974
TaqII GACCGA 1 cut(s) 1270
TatI WGTACW 7 cut(s) 387, 800, 1162, 1273, 2425, 3538, 5461
TauI GCSGC 1 cut(s) 3402
TseFI GTSAC 5 cut(s) 111, 2035, 2597, 3361, 4282
TseI GCWGC 9 cut(s) 78, 605, 905, 2294, 2492, 2645, 2925, 4466, 5514
Tsp45I GTSAC 5 cut(s) 111, 2035, 2597, 3361, 4282
TspGWI ACGGA 2 cut(s) 316, 4619
Van91I CCANNNNNTGG 1 cut(s) 2235
Vha464I CTTAAG 3 cut(s) 3163, 3481, 4166
VneI GTGCAC 2 cut(s) 339, 5005
VpaK11BI GGWCC 3 cut(s) 2120, 5741, 5915
VspI ATTAAT 3 cut(s) 1613, 1686, 2081
XbaI TCTAGA 1 cut(s) 1489
XcmI CCANNNNNNNNNTGG 1 cut(s) 2811
XmiI GTMKAC 2 cut(s) 1070, 5350
XmnI GAANNNNTTC 2 cut(s) 2879, 5053
Zsp2I ATGCAT 3 cut(s) 2526, 2845, 4769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.