RchiOBHm_Chr6g0244921

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
885614 .. 887067
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21950

Sequence Viewer

Length: 363 bp
ATGAGGCTTTCTTTGGTGGATTCCCCGGATCGATGCTCATTATTCTCCAAGATAACAGATATTGGATGCCAATTAATTATCCTCTATAGTCAACTTCGCCAGGTGAATTGTACCATCTTTGCATTGTGTAAAGCAGTAAGGGTTATTAATTTGGATAATAGCGATGGTGAACTGAACTATACTAGATTTTTTATTCCTTTTCATGGTGAAGCATATGCAAAAGCTGTGGAAATGCTATTATCTGCGCACGGATTCAAAATTGCAATCCATAAAGCAATGAAGTCCATATCAGAAGGACAAGCAAGTCGGTGTATTTGGCAGTTAACATTGGATTTTTCAGAATCTAGAGTGGATGAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

120

Amino Acids

13.55

Weight (kDa)

6.81

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 303
Acc16I TGCGCA 1 cut(s) 246
AclWI GGATC 1 cut(s) 36
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 1 cut(s) 36
AseI ATTAAT 2 cut(s) 74, 147
AspLEI GCGC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 3 cut(s) 115, 179, 218
BccI CCATC 2 cut(s) 122, 158
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 26
BfaI CTAG 2 cut(s) 183, 345
BfmI CTRYAG 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 26, 101
BmrFI CCNGG 2 cut(s) 26, 101
BmsI GCATC 2 cut(s) 23, 56
BpuMI CCSGG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 71, 358
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 28
BspDI ATCGAT 1 cut(s) 31
BspPI GGATC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 71, 358
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 24, 99
BstSFI CTRYAG 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 71, 358
CfoI GCGC 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 1 cut(s) 203
CviJI RGCY 2 cut(s) 7, 224
CviKI_1 RGCY 2 cut(s) 7, 224
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DrdI GACNNNNNNGTC 1 cut(s) 303
DseDI GACNNNNNNGTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 206
FaiI YATR 7 cut(s) 87, 180, 204, 214, 216, 270, 287
FatI CATG 1 cut(s) 202
FauNDI CATATG 1 cut(s) 214
FokI GGATG 1 cut(s) 78
FspBI CTAG 2 cut(s) 183, 345
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 1 cut(s) 246
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 247
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 2 cut(s) 92, 324
HindII GTYRAC 2 cut(s) 92, 324
HinfI GANTC 3 cut(s) 20, 252, 341
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 115, 179, 218
Hpy166II GTNNAC 3 cut(s) 92, 170, 324
Hpy188I TCNGA 2 cut(s) 292, 340
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 3 cut(s) 92, 170, 324
HpyAV CCTTC 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 122, 218, 263
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 245
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 39, 86, 113
LweI GCATC 2 cut(s) 23, 56
MaeI CTAG 2 cut(s) 183, 345
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MluCI AATT 5 cut(s) 71, 75, 106, 148, 258
MnlI CCTC 1 cut(s) 92
MseI TTAA 3 cut(s) 74, 147, 323
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 26, 101
MvaI CCWGG 1 cut(s) 101
NciI CCSGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 214
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 206
NsbI TGCGCA 1 cut(s) 246
PfeI GAWTC 3 cut(s) 20, 252, 341
PshBI ATTAAT 2 cut(s) 74, 147
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 74, 147, 323
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 26, 101
SetI ASST 2 cut(s) 105, 226
SfaNI GCATC 2 cut(s) 23, 56
SfcI CTRYAG 1 cut(s) 85
Sse9I AATT 5 cut(s) 71, 75, 106, 148, 258
SspMI CTAG 2 cut(s) 183, 345
StyD4I CCNGG 2 cut(s) 24, 99
TaqI TCGA 1 cut(s) 31
TasI AATT 5 cut(s) 71, 75, 106, 148, 258
TfiI GAWTC 3 cut(s) 20, 252, 341
Tru1I TTAA 3 cut(s) 74, 147, 323
Tru9I TTAA 3 cut(s) 74, 147, 323
TspDTI ATGAA 2 cut(s) 191, 293
TspGWI ACGGA 1 cut(s) 264
VspI ATTAAT 2 cut(s) 74, 147
XbaI TCTAGA 1 cut(s) 344
XspI CTAG 2 cut(s) 183, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.