RchiOBHm_Chr6g0244901

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
882658 .. 883005
348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21948

Sequence Viewer

Length: 264 bp
ATGCGAGTCTTGTTATTGGAATCAGTGGACGCAAGTCAGGTGCCACACTTCTATTTTTTTGTGTGTTTAGATGGTGTTCTAAAGTATCTGGAAGAATTGGGGAATCATTTTCCTTTGACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGTTGGTTCAGCTACACTTATGGGCTCTAGGGAAATGCGTTACTTTACAAGGGAAAAGAGCAACTCTTGCCTCTCATGAAACAAACACTCCTTTCTCATATGGGATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

87

Amino Acids

9.91

Weight (kDa)

6.38

Isoelectric Point (pI)

22.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 178
BccI CCATC 1 cut(s) 65
BfaI CTAG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 42
BoxI GACNNNNGTC 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
BshNI GGYRCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 178
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 30
CciI TCATGA 1 cut(s) 226
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 227
CviJI RGCY 2 cut(s) 163, 176
CviKI_1 RGCY 2 cut(s) 163, 176
Eco24I GRGCYC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 1 cut(s) 230
FaiI YATR 4 cut(s) 172, 228, 250, 252
FatI CATG 1 cut(s) 226
FauNDI CATATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 178
FspBI CTAG 1 cut(s) 179
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 230
HinfI GANTC 3 cut(s) 6, 20, 103
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 3 cut(s) 89, 135, 227
Hpy8I GTNNAC 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 1 cut(s) 230
LpnPI CCDG 3 cut(s) 23, 74, 148
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeI CATATG 1 cut(s) 250
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 42
PagI TCATGA 1 cut(s) 226
PfeI GAWTC 2 cut(s) 20, 103
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PshAI GACNNNNGTC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 42, 131, 165
Sse9I AATT 1 cut(s) 95
SspMI CTAG 1 cut(s) 179
TasI AATT 1 cut(s) 95
TfiI GAWTC 2 cut(s) 20, 103
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 1 cut(s) 30
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.