Rh6DG025300

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Reverse (-)
2229553 .. 2230266
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG025300.1

Sequence Viewer

Length: 714 bp
ATGAGGGTGTATTTGTTTTCCGATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTCAGAAAGATGGATTTCGTGATTTTAGTAATGAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACGAGAAACTTAGTGAAGCTTGTTGAAGATGTATTATCTCATGGGCTATATCACCCACTCCACATTGATGGGTTTTTGAGTTTATGCAGTACTGAAAAATGCGCCACATCCAATCATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGAGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCTTTTGCAGTAGAAAGCATAGGAGTATTGTTTCATTTGCTTATTGATCAAGTTAAAAAGCTAAAGGGGGATTCAGCACTGACCGCAAGTACCAAAATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAACGTCTACGATGTCGTCTGAGAGTCGTATTGTTGAAAAAAATTATTGCTCAACTAGTTTCAATCCAGAAACAGGAAAGTCGCTTCACTATTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGATGATGTTCATTGCACACTTAAAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

237

Amino Acids

26.42

Weight (kDa)

6.86

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 518
AciI CCGC 1 cut(s) 447
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 3 cut(s) 250, 454, 612
AfiI CCNNNNNNNGG 2 cut(s) 276, 584
AgsI TTSAA 5 cut(s) 185, 483, 548, 574, 656
AhlI ACTAGT 1 cut(s) 566
AjnI CCWGG 2 cut(s) 52, 151
AluBI AGCT 6 cut(s) 91, 178, 353, 424, 664, 709
AluI AGCT 6 cut(s) 91, 178, 353, 424, 664, 709
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 673
ApaI GGGCCC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 673, 674
AsuHPI GGTGA 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 677
BanII GRGCYC 2 cut(s) 93, 677
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 340
BccI CCATC 3 cut(s) 59, 221, 457
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 54, 153
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 1 cut(s) 567
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 54, 153
BmgT120I GGNCC 2 cut(s) 673, 674
BmiI GGNNCC 2 cut(s) 624, 675
BmrFI CCNGG 2 cut(s) 54, 153
BmsI GCATC 2 cut(s) 118, 136
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 3 cut(s) 61, 116, 656
BsaI GGTCTC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 584
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 2 cut(s) 54, 153
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 276, 584
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 276, 584
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 675
Bso31I GGTCTC 1 cut(s) 125
Bsp120I GGGCCC 1 cut(s) 673
Bsp1286I GDGCHC 2 cut(s) 93, 677
Bsp143I GATC 2 cut(s) 409, 639
BspACI CCGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 624, 675
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 693
BssMI GATC 2 cut(s) 409, 639
Bst2UI CCWGG 2 cut(s) 54, 153
BstAPI GCANNNNNTGC 1 cut(s) 362
BstDEI CTNAG 3 cut(s) 169, 531, 660
BstF5I GGATG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 2 cut(s) 412, 642
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 409, 639
BstMWI GCNNNNNNNGC 5 cut(s) 97, 106, 362, 446, 631
BstNI CCWGG 2 cut(s) 54, 153
BstSCI CCNGG 2 cut(s) 52, 151
BstSLI GKGCMC 1 cut(s) 677
BstV1I GCAGC 1 cut(s) 340
BstXI CCANNNNNNTGG 3 cut(s) 140, 227, 463
BsuRI GGCC 1 cut(s) 675
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 673, 674
Csp6I GTAC 3 cut(s) 249, 453, 611
CviAII CATG 2 cut(s) 200, 275
CviQI GTAC 3 cut(s) 249, 453, 611
DdeI CTNAG 3 cut(s) 169, 531, 660
DpnI GATC 2 cut(s) 411, 641
DpnII GATC 2 cut(s) 409, 639
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 93, 677
Eco31I GGTCTC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 2 cut(s) 52, 151
EcoT38I GRGCYC 2 cut(s) 93, 677
FaeI CATG 2 cut(s) 203, 278
FaiI YATR 8 cut(s) 201, 208, 244, 276, 318, 383, 620, 712
FatI CATG 2 cut(s) 199, 274
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 518
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 2 cut(s) 93, 677
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 675
HhaI GCGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 203, 278
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 4 cut(s) 23, 290, 434, 535
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 3 cut(s) 22, 60, 532
Hpy188III TCNNGA 4 cut(s) 74, 133, 578, 653
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 2 cut(s) 335, 470
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 6 cut(s) 109, 127, 246, 356, 371, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 106, 362, 446, 631
HpyF3I CTNAG 3 cut(s) 169, 531, 660
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 2 cut(s) 203, 278
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 2 cut(s) 409, 639
LmnI GCTCC 2 cut(s) 96, 622
LpnPI CCDG 9 cut(s) 39, 66, 138, 146, 165, 320, 570, 591, 690
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 2 cut(s) 118, 136
MaeI CTAG 1 cut(s) 567
MaeII ACGT 1 cut(s) 515
MalI GATC 2 cut(s) 411, 641
MboI GATC 2 cut(s) 409, 639
MboII GAAGA 2 cut(s) 197, 506
MhlI GDGCHC 2 cut(s) 93, 677
MluCI AATT 3 cut(s) 345, 553, 680
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 2 cut(s) 111, 636
MseI TTAA 2 cut(s) 417, 704
MslI CAYNNNNRTG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 54, 153
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 54, 153
MwoI GCNNNNNNNGC 5 cut(s) 97, 106, 362, 446, 631
NdeII GATC 2 cut(s) 409, 639
NlaIII CATG 2 cut(s) 203, 278
NlaIV GGNNCC 2 cut(s) 624, 675
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 23, 290, 434
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 52, 151
PspGI CCWGG 2 cut(s) 52, 151
PspN4I GGNNCC 2 cut(s) 624, 675
PspOMI GGGCCC 1 cut(s) 673
PspPI GGNCC 2 cut(s) 673, 674
RsaI GTAC 3 cut(s) 250, 454, 612
RsaNI GTAC 3 cut(s) 249, 453, 611
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 417, 704
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 2 cut(s) 409, 639
Sau96I GGNCC 2 cut(s) 673, 674
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 2 cut(s) 54, 153
SduI GDGCHC 2 cut(s) 93, 677
SetI ASST 9 cut(s) 58, 93, 180, 355, 426, 481, 518, 666, 711
SfaNI GCATC 2 cut(s) 118, 136
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 3 cut(s) 40, 95, 635
SmoI CTYRAG 3 cut(s) 40, 95, 635
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 3 cut(s) 345, 553, 680
SsiI CCGC 1 cut(s) 447
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 52, 151
TaiI ACGT 1 cut(s) 518
TasI AATT 3 cut(s) 345, 553, 680
TatI WGTACW 2 cut(s) 248, 610
TfiI GAWTC 3 cut(s) 23, 290, 434
Tru1I TTAA 2 cut(s) 417, 704
Tru9I TTAA 2 cut(s) 417, 704
TscAI CASTG 1 cut(s) 447
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 386, 492, 682
TspRI CASTG 1 cut(s) 447
XapI RAATTY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 518
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.