Rh6AG029300

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3599908 .. 3601663
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG029300.1

Sequence Viewer

Length: 1176 bp
ATGTTGTCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAATTCTTGTTATTGGAATCAGCGGACGCAATTCAGGTGCCACACTTCTATTATTTTGTGTGTTTAGATGGTGTTCTGAAGTATCTGGAAGAATTAGGGAATCATTTTCCATTGACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTAGGGAAATGCATAACTTTACAAGGCAACAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCATAGGAGAAAGGAGATTTTCCGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAACTAGGTTGAGGTCATCATTCGCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCGGGAAGGGTGCACAGTGAGGTATGACATATGTGCTGGAAGTGAAGATGGAGGAAGGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTAGTTCTGGAATTTGTTTCAGGATGCAATTTGGTTGTGGTTAAAAAATACATTCAGAGGTTAGTTGCCTGCATGTTCAATGTTATTCTGCATCTGCAGAGTCCACTAATCTTCTATGAGAGATTCACTCTGAGTAAAGATGATAGTGATCCAGATCCAGGAACTGTCATTCTTATGTGTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTATGTATACCTTCAGCACGTTTTCAAGATTTCCATCTGTTAAAACATTCTAAACATCCTGTTCCAAATGATTCTTCAACAAGTCCAAATAACCAACCATCCGACCCAGTAGCAAGTGTACATGTCTCTGGTATAGATAGGCAATACTCAATCGGCCTATATTCTGCTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGTGAATGCGAGGGGTATGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTCTTTATTGTTTGGAGACATTGGATGCTGTTGTGGTAGCCAGGGAAGGCTTCTTTTCATGGGAAGTAGAAGAAGGAGTCAAATTGCATGTTCTCTCAGAAGGATTTATGAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

391

Amino Acids

43.74

Weight (kDa)

6.49

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 242 - 366 9e-10 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 808
AciI CCGC 2 cut(s) 62, 454
AclWI GGATC 3 cut(s) 692, 698, 786
AcsI RAATTY 3 cut(s) 347, 560, 747
AcuI CTGAAG 2 cut(s) 137, 798
AfaI GTAC 2 cut(s) 738, 921
AfiI CCNNNNNNNGG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 7 cut(s) 352, 425, 519, 628, 827, 879, 1040
AjnI CCWGG 2 cut(s) 706, 1097
AjuI GAANNNNNNNTTGG 4 cut(s) 405, 437, 859, 891
AleI CACNNNNGTG 1 cut(s) 1008
AluBI AGCT 4 cut(s) 12, 199, 428, 1043
AluI AGCT 4 cut(s) 12, 199, 428, 1043
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 931, 1067
Alw44I GTGCAC 1 cut(s) 463
AlwI GGATC 3 cut(s) 692, 698, 786
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 1 cut(s) 955
ApaLI GTGCAC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 972
ApoI RAATTY 3 cut(s) 347, 560, 747
Asp700I GAANNNNTTC 1 cut(s) 511
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 214, 442
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 959
BccI CCATC 5 cut(s) 101, 184, 494, 843, 907
BciT130I CCWGG 2 cut(s) 708, 1099
BcoDI GTCTC 2 cut(s) 931, 1067
BfaI CTAG 3 cut(s) 215, 357, 443
BfmI CTRYAG 3 cut(s) 200, 417, 644
BisI GCNGC 1 cut(s) 973
BlsI GCNGC 1 cut(s) 974
Bme1390I CCNGG 2 cut(s) 708, 1099
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 708, 1099
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 8 cut(s) 266, 320, 415, 536, 563, 649, 1009, 1072
BmuI ACTGGG 1 cut(s) 902
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BsaBI GATNNNNATC 3 cut(s) 696, 702, 834
BsaJI CCNNGG 1 cut(s) 1098
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 744, 908
Bse8I GATNNNNATC 3 cut(s) 696, 702, 834
BseBI CCWGG 2 cut(s) 708, 1099
BseDI CCNNGG 1 cut(s) 1098
BseGI GGATG 5 cut(s) 349, 578, 856, 899, 1087
BseJI GATNNNNATC 3 cut(s) 696, 702, 834
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMII CTCAG 2 cut(s) 671, 1167
BseNI ACTGG 2 cut(s) 744, 908
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 1 cut(s) 959
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 957
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 707
BsmAI GTCTC 2 cut(s) 931, 1067
BsmI GAATGC 1 cut(s) 1019
BsnI GGCC 1 cut(s) 957
Bsp1286I GDGCHC 3 cut(s) 214, 442, 467
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 3 cut(s) 697, 703, 778
BspACI CCGC 2 cut(s) 62, 454
BspANI GGCC 1 cut(s) 957
BspCNI CTCAG 2 cut(s) 672, 1166
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 2 cut(s) 421, 648
BspPI GGATC 3 cut(s) 692, 698, 786
BspT107I GGYRCC 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 2 cut(s) 744, 908
BssECI CCNNGG 1 cut(s) 1098
BssMI GATC 3 cut(s) 697, 703, 778
BssNAI GTATAC 1 cut(s) 809
Bst1107I GTATAC 1 cut(s) 809
Bst2UI CCWGG 2 cut(s) 708, 1099
Bst4CI ACNGT 3 cut(s) 204, 469, 715
Bst6I CTCTTC 1 cut(s) 1163
BstAPI GCANNNNNTGC 2 cut(s) 254, 540
BstAUI TGTACA 1 cut(s) 919
BstC8I GCNNGC 5 cut(s) 31, 619, 758, 762, 970
BstDEI CTNAG 2 cut(s) 680, 1153
BstF5I GGATG 5 cut(s) 349, 578, 856, 899, 1087
BstKTI GATC 3 cut(s) 700, 706, 781
BstMAI GTCTC 2 cut(s) 931, 1067
BstMBI GATC 3 cut(s) 697, 703, 778
BstMWI GCNNNNNNNGC 3 cut(s) 254, 425, 540
BstNI CCWGG 2 cut(s) 708, 1099
BstNSI RCATGY 5 cut(s) 625, 764, 791, 926, 1148
BstSCI CCNGG 2 cut(s) 706, 1097
BstSFI CTRYAG 3 cut(s) 200, 417, 644
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 959
BstX2I RGATCY 2 cut(s) 703, 778
BstYI RGATCY 2 cut(s) 703, 778
BstZ17I GTATAC 1 cut(s) 809
BsuRI GGCC 1 cut(s) 957
BtsCI GGATG 5 cut(s) 349, 578, 856, 899, 1087
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 384, 474
Cac8I GCNNGC 5 cut(s) 31, 619, 758, 762, 970
CaiI CAGNNNCTG 1 cut(s) 713
CciI TCATGA 1 cut(s) 262
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 737, 920
CviAII CATG 7 cut(s) 263, 622, 761, 788, 923, 1116, 1145
CviQI GTAC 2 cut(s) 737, 920
DdeI CTNAG 2 cut(s) 680, 1153
DpnI GATC 3 cut(s) 699, 705, 780
DpnII GATC 3 cut(s) 697, 703, 778
Eam1104I CTCTTC 1 cut(s) 1163
EarI CTCTTC 1 cut(s) 1163
Eco24I GRGCYC 2 cut(s) 214, 442
Eco57I CTGAAG 2 cut(s) 137, 798
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 706, 1097
EcoT22I ATGCAT 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 214, 442
FaeI CATG 7 cut(s) 266, 625, 764, 791, 926, 1119, 1148
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FatI CATG 7 cut(s) 262, 621, 760, 787, 922, 1115, 1144
FauI CCCGC 1 cut(s) 447
FauNDI CATATG 1 cut(s) 482
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 1 cut(s) 973
FokI GGATG 5 cut(s) 356, 585, 843, 886, 1094
FriOI GRGCYC 2 cut(s) 214, 442
Fsp4HI GCNGC 1 cut(s) 973
FspBI CTAG 3 cut(s) 215, 357, 443
GluI GCNGC 1 cut(s) 973
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 957
HgaI GACGC 1 cut(s) 74
Hin1II CATG 7 cut(s) 266, 625, 764, 791, 926, 1119, 1148
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 2 cut(s) 10, 1041
HinfI GANTC 6 cut(s) 56, 139, 649, 672, 872, 1134
Hpy166II GTNNAC 5 cut(s) 465, 653, 733, 809, 920
Hpy188I TCNGA 6 cut(s) 117, 307, 606, 681, 904, 1156
Hpy188III TCNNGA 7 cut(s) 125, 171, 263, 557, 570, 701, 827
Hpy8I GTNNAC 5 cut(s) 465, 653, 733, 809, 920
HpyAV CCTTC 6 cut(s) 452, 501, 822, 1097, 1124, 1151
HpyCH4III ACNGT 3 cut(s) 204, 469, 715
HpyCH4IV ACGT 2 cut(s) 735, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 425, 540
HpyF3I CTNAG 2 cut(s) 680, 1153
HpySE526I ACGT 2 cut(s) 735, 820
Hsp92II CATG 7 cut(s) 266, 625, 764, 791, 926, 1119, 1148
Kzo9I GATC 3 cut(s) 697, 703, 778
Lsp1109I GCAGC 1 cut(s) 959
LweI GCATC 8 cut(s) 266, 320, 415, 536, 563, 649, 1009, 1072
MaeI CTAG 3 cut(s) 215, 357, 443
MaeII ACGT 2 cut(s) 735, 820
MaeIII GTNAC 1 cut(s) 204
MalI GATC 3 cut(s) 699, 705, 780
MboI GATC 3 cut(s) 697, 703, 778
MboII GAAGA 7 cut(s) 140, 507, 509, 652, 867, 1049, 1139
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 2 cut(s) 703, 778
MhlI GDGCHC 3 cut(s) 214, 442, 467
MluCI AATT 9 cut(s) 41, 69, 131, 347, 519, 560, 577, 747, 1139
MlyI GAGTC 2 cut(s) 658, 1143
MmeI TCCRAC 1 cut(s) 927
MnlI CCTC 6 cut(s) 357, 465, 497, 600, 1012, 1164
Mph1103I ATGCAT 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 511
MseI TTAA 2 cut(s) 591, 842
MslI CAYNNNNRTG 2 cut(s) 722, 1008
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 708, 1099
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 1019
MvaI CCWGG 2 cut(s) 708, 1099
MwoI GCNNNNNNNGC 3 cut(s) 254, 425, 540
NdeI CATATG 1 cut(s) 482
NdeII GATC 3 cut(s) 697, 703, 778
NlaIII CATG 7 cut(s) 266, 625, 764, 791, 926, 1119, 1148
NlaIV GGNNCC 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 5 cut(s) 625, 764, 791, 926, 1148
OliI CACNNNNGTG 1 cut(s) 1008
PaeI GCATGC 1 cut(s) 764
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 922
PctI GAATGC 1 cut(s) 1019
PdmI GAANNNNTTC 1 cut(s) 511
PfeI GAWTC 4 cut(s) 56, 139, 672, 872
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 1 cut(s) 974
PleI GAGTC 2 cut(s) 657, 1142
PpsI GAGTC 2 cut(s) 657, 1142
PscI ACATGT 1 cut(s) 922
Psp6I CCWGG 2 cut(s) 706, 1097
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 2 cut(s) 706, 1097
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 2 cut(s) 421, 648
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 2 cut(s) 703, 778
RsaI GTAC 2 cut(s) 738, 921
RsaNI GTAC 2 cut(s) 737, 920
RseI CAYNNNNRTG 2 cut(s) 722, 1008
SaqAI TTAA 2 cut(s) 591, 842
SatI GCNGC 1 cut(s) 973
Sau3AI GATC 3 cut(s) 697, 703, 778
SchI GAGTC 2 cut(s) 658, 1143
ScrFI CCNGG 2 cut(s) 708, 1099
SduI GDGCHC 3 cut(s) 214, 442, 467
SfaNI GCATC 8 cut(s) 266, 320, 415, 536, 563, 649, 1009, 1072
SfcI CTRYAG 3 cut(s) 200, 417, 644
SmiMI CAYNNNNRTG 2 cut(s) 722, 1008
SphI GCATGC 1 cut(s) 764
Sse9I AATT 9 cut(s) 41, 69, 131, 347, 519, 560, 577, 747, 1139
SsiI CCGC 2 cut(s) 62, 454
SspI AATATT 1 cut(s) 335
SspMI CTAG 3 cut(s) 215, 357, 443
StyD4I CCNGG 2 cut(s) 706, 1097
TaaI ACNGT 3 cut(s) 204, 469, 715
TaiI ACGT 2 cut(s) 738, 823
TaqI TCGA 1 cut(s) 432
TasI AATT 9 cut(s) 41, 69, 131, 347, 519, 560, 577, 747, 1139
TatI WGTACW 1 cut(s) 919
TfiI GAWTC 4 cut(s) 56, 139, 672, 872
Tru1I TTAA 2 cut(s) 591, 842
Tru9I TTAA 2 cut(s) 591, 842
TscAI CASTG 2 cut(s) 384, 474
TseI GCWGC 1 cut(s) 972
TspDTI ATGAA 4 cut(s) 279, 360, 373, 1104
TspRI CASTG 2 cut(s) 384, 474
VneI GTGCAC 1 cut(s) 463
XapI RAATTY 3 cut(s) 347, 560, 747
XceI RCATGY 5 cut(s) 625, 764, 791, 926, 1148
XmiI GTMKAC 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 511
XspI CTAG 3 cut(s) 215, 357, 443
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.