RchiOBHm_Chr6g0245531

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
1304461 .. 1306434
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22004

Sequence Viewer

Length: 1209 bp
ATGTCTGCAGAAATTGCAGATTCGTTCTCTTCATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTTCTTTCTGTTATTCAGTCTGTTTCAAACATCTTTTGTAAGGACTGTGCAGCTGATTCTTGTCCTTTAACTTATGTAATGCATGCTATGGCTTGTGAAAGGCTTGTGGATTTGAATAGTCGTATAAAGTCTTTTGAATATTTGATTGAAAATGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAGGAGGCAGCAGGACTCACGGGATTTATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCGTTTCTGCTGATACGACTAATAATAAGATGGTTAACTATGAAAGTGATGAATGGGATTTCAGTATTTGTTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCGTGCCTCTAAAAAGGATTTGAAGAGATTCCTTTCTCTTTTAATCCAAACTTCAATTCCCTATGTAAGAAACAGCTTTGGGGTGGTTATAGAACACAAGAACCATGAAGCTGACAGGCCGAAGAATGTGGCATTGGATCAAATCTCATACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGAGTATTTTGCAAAGAGGTTCTGCAGTGCATTGGAGAAATCTACATTACCATTCAGCAGCGACTTTCCATCCGGCAATGTTAAATTCAAATCATCACCTAATTGGCCAAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCTGCAAGAAACTCAATGTATCTGATTGTTCCTCAGCCTCAAGTTGCAAGGGACAAAACTCCCAACCATCTACCATCATGAAATTTACAGCTTGTCAGAGTTTGCTTAATCTTTTGAGTTGTATGCCAAAAGGTCATTTGGACAGAAGATCATTTTCACGTTATGTGACTTCTATTCTCAACCTCGAGAGGATTGTTGTTGGCGGCTTATTAGATTATCAGAATGCTTCATGCTCAACTTATTATTATGAGCTCTTCAGATTGTTTGTGTCCTGTCGGAAGGCCTTAAGATGTATAATTACTGCTTGTGAGGAGACAATAGCCAGTCGAACCTCAGTAGACAGTAGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

402

Amino Acids

45.13

Weight (kDa)

6.95

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 519
AccI GTMKAC 2 cut(s) 1194, 1201
AciI CCGC 2 cut(s) 290, 1059
AclWI GGATC 2 cut(s) 77, 669
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 2 cut(s) 791, 938
AcuI CTGAAG 3 cut(s) 90, 384, 1096
AfaI GTAC 1 cut(s) 99
AflII CTTAAG 2 cut(s) 823, 1141
AgsI TTSAA 7 cut(s) 141, 229, 251, 263, 547, 579, 796
AjuI GAANNNNNNNTTGG 6 cut(s) 564, 596, 641, 673, 830, 862
AleI CACNNNNGTG 1 cut(s) 487
AluBI AGCT 6 cut(s) 110, 167, 600, 635, 947, 1108
AluI AGCT 6 cut(s) 110, 167, 600, 635, 947, 1108
Alw21I GWGCWC 2 cut(s) 348, 1110
Alw26I GTCTC 1 cut(s) 1163
AlwI GGATC 2 cut(s) 77, 669
Ama87I CYCGRG 1 cut(s) 1040
AoxI GGCC 3 cut(s) 641, 812, 1137
ApeKI GCWGC 3 cut(s) 164, 317, 765
ApoI RAATTY 2 cut(s) 791, 938
Asp700I GAANNNNTTC 1 cut(s) 551
AsuHPI GGTGA 2 cut(s) 281, 795
AvaI CYCGRG 1 cut(s) 1040
BaeGI GKGCMC 1 cut(s) 524
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 1110
BauI CACGAG 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 348, 1110
BbvCI CCTCAGC 1 cut(s) 889
BbvI GCAGC 3 cut(s) 176, 329, 777
BccI CCATC 6 cut(s) 46, 334, 406, 784, 931, 938
BcoDI GTCTC 1 cut(s) 1163
BfmI CTRYAG 2 cut(s) 6, 730
BfrI CTTAAG 2 cut(s) 823, 1141
BglII AGATCT 1 cut(s) 294
BisI GCNGC 4 cut(s) 165, 318, 766, 1060
BlsI GCNGC 4 cut(s) 166, 319, 767, 1061
BmeT110I CYCGRG 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 521
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 889
BpuEI CTTGAG 1 cut(s) 880
Bse1I ACTGG 2 cut(s) 692, 1179
Bse3DI GCAATG 2 cut(s) 470, 790
BseGI GGATG 2 cut(s) 57, 776
BseMI GCAATG 2 cut(s) 470, 790
BseMII CTCAG 2 cut(s) 903, 1203
BseNI ACTGG 2 cut(s) 692, 1179
BseRI GAGGAG 1 cut(s) 1181
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 3 cut(s) 176, 329, 777
BsgI GTGCAG 2 cut(s) 183, 465
BshFI GGCC 3 cut(s) 643, 814, 1139
BshNI GGYRCC 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 348, 1110
BsiHKCI CYCGRG 1 cut(s) 1040
BsiSI CCGG 1 cut(s) 780
BslFI GGGAC 1 cut(s) 921
BsmAI GTCTC 1 cut(s) 1163
BsmFI GGGAC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 1084
BsnI GGCC 3 cut(s) 643, 814, 1139
BsoBI CYCGRG 1 cut(s) 1040
Bsp1286I GDGCHC 3 cut(s) 348, 524, 1110
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 5 cut(s) 69, 294, 367, 661, 1004
BspACI CCGC 2 cut(s) 290, 1059
BspANI GGCC 3 cut(s) 643, 814, 1139
BspCNI CTCAG 2 cut(s) 902, 1202
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 1 cut(s) 521
BspMAI CTGCAG 2 cut(s) 10, 734
BspPI GGATC 2 cut(s) 77, 669
BspQI GCTCTTC 1 cut(s) 1115
BspT107I GGYRCC 1 cut(s) 519
BspTI CTTAAG 2 cut(s) 823, 1141
BsrDI GCAATG 2 cut(s) 470, 790
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 2 cut(s) 692, 1179
BssMI GATC 5 cut(s) 69, 294, 367, 661, 1004
BssSI CACGAG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 4 cut(s) 161, 677, 1199, 1206
Bst6I CTCTTC 5 cut(s) 34, 120, 304, 542, 1115
BstAFI CTTAAG 2 cut(s) 823, 1141
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 889, 1189
BstF5I GGATG 2 cut(s) 57, 776
BstKTI GATC 5 cut(s) 72, 297, 370, 664, 1007
BstMAI GTCTC 1 cut(s) 1163
BstMBI GATC 5 cut(s) 69, 294, 367, 661, 1004
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 2 cut(s) 6, 730
BstSLI GKGCMC 1 cut(s) 524
BstV1I GCAGC 3 cut(s) 176, 329, 777
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 3 cut(s) 643, 814, 1139
BtsCI GGATG 2 cut(s) 57, 776
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 682, 739
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 933
Csp6I GTAC 1 cut(s) 98
CviAII CATG 6 cut(s) 197, 512, 516, 629, 934, 1086
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 2 cut(s) 889, 1189
DpnI GATC 5 cut(s) 71, 296, 369, 663, 1006
DpnII GATC 5 cut(s) 69, 294, 367, 661, 1004
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 5 cut(s) 34, 120, 304, 542, 1115
EarI CTCTTC 5 cut(s) 34, 120, 304, 542, 1115
Ecl136II GAGCTC 1 cut(s) 1108
Eco147I AGGCCT 1 cut(s) 1139
Eco24I GRGCYC 1 cut(s) 1110
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 3 cut(s) 90, 384, 1096
Eco88I CYCGRG 1 cut(s) 1040
EcoICRI GAGCTC 1 cut(s) 1108
EcoT22I ATGCAT 2 cut(s) 198, 517
EcoT38I GRGCYC 1 cut(s) 1110
FaeI CATG 6 cut(s) 200, 515, 519, 632, 937, 1089
FaqI GGGAC 1 cut(s) 921
FatI CATG 6 cut(s) 196, 511, 515, 628, 933, 1085
FblI GTMKAC 2 cut(s) 1194, 1201
Fnu4HI GCNGC 4 cut(s) 165, 318, 766, 1060
FokI GGATG 2 cut(s) 64, 763
FriOI GRGCYC 1 cut(s) 1110
Fsp4HI GCNGC 4 cut(s) 165, 318, 766, 1060
GluI GCNGC 4 cut(s) 165, 318, 766, 1060
HaeIII GGCC 3 cut(s) 643, 814, 1139
HapII CCGG 1 cut(s) 780
Hin1II CATG 6 cut(s) 200, 515, 519, 632, 937, 1089
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 5 cut(s) 20, 170, 324, 552, 688
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 1 cut(s) 780
HphI GGTGA 2 cut(s) 281, 795
Hpy166II GTNNAC 4 cut(s) 418, 460, 1195, 1202
Hpy188I TCNGA 7 cut(s) 64, 364, 880, 954, 1077, 1115, 1134
Hpy188III TCNNGA 2 cut(s) 934, 1042
Hpy8I GTNNAC 4 cut(s) 418, 460, 1195, 1202
HpyAV CCTTC 2 cut(s) 114, 1129
HpyCH4III ACNGT 4 cut(s) 161, 677, 1199, 1206
HpyCH4IV ACGT 1 cut(s) 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 889, 1189
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 6 cut(s) 200, 515, 519, 632, 937, 1089
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 5 cut(s) 69, 294, 367, 661, 1004
LguI GCTCTTC 1 cut(s) 1115
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 3 cut(s) 176, 329, 777
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 2 cut(s) 269, 1021
MalI GATC 5 cut(s) 71, 296, 369, 663, 1006
MboI GATC 5 cut(s) 69, 294, 367, 661, 1004
MboII GAAGA 8 cut(s) 21, 107, 291, 377, 559, 658, 1014, 1102
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 3 cut(s) 348, 524, 1110
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 6 cut(s) 12, 579, 791, 808, 938, 1152
MluNI TGGCCA 1 cut(s) 814
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 1112
Mox20I TGGCCA 1 cut(s) 814
Mph1103I ATGCAT 2 cut(s) 198, 517
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 814
MseI TTAA 7 cut(s) 182, 417, 566, 789, 824, 963, 1142
MslI CAYNNNNRTG 1 cut(s) 487
Msp20I TGGCCA 1 cut(s) 814
MspA1I CMGCKG 1 cut(s) 167
MspCI CTTAAG 2 cut(s) 823, 1141
MspI CCGG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 1084
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 5 cut(s) 69, 294, 367, 661, 1004
NlaIII CATG 6 cut(s) 200, 515, 519, 632, 937, 1089
NlaIV GGNNCC 1 cut(s) 521
NmuCI GTSAC 2 cut(s) 269, 1021
NsiI ATGCAT 2 cut(s) 198, 517
NspI RCATGY 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 487
PaeI GCATGC 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 1040
PagI TCATGA 1 cut(s) 933
PceI AGGCCT 1 cut(s) 1139
PciSI GCTCTTC 1 cut(s) 1115
PctI GAATGC 1 cut(s) 1084
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 4 cut(s) 20, 170, 552, 688
PkrI GCNGC 4 cut(s) 166, 319, 767, 1061
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 1110
PspN4I GGNNCC 1 cut(s) 521
PstI CTGCAG 2 cut(s) 10, 734
PsuI RGATCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 487
SacI GAGCTC 1 cut(s) 1110
SapI GCTCTTC 1 cut(s) 1115
SaqAI TTAA 7 cut(s) 182, 417, 566, 789, 824, 963, 1142
SatI GCNGC 4 cut(s) 165, 318, 766, 1060
Sau3AI GATC 5 cut(s) 69, 294, 367, 661, 1004
SchI GAGTC 1 cut(s) 318
SduI GDGCHC 3 cut(s) 348, 524, 1110
SfcI CTRYAG 2 cut(s) 6, 730
Sfr274I CTCGAG 1 cut(s) 1040
SlaI CTCGAG 1 cut(s) 1040
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 4 cut(s) 823, 895, 1040, 1141
SmoI CTYRAG 4 cut(s) 823, 895, 1040, 1141
SphI GCATGC 1 cut(s) 200
Sse9I AATT 6 cut(s) 12, 579, 791, 808, 938, 1152
SseBI AGGCCT 1 cut(s) 1139
SsiI CCGC 2 cut(s) 290, 1059
SspI AATATT 3 cut(s) 254, 381, 508
SstI GAGCTC 1 cut(s) 1110
StuI AGGCCT 1 cut(s) 1139
TaaI ACNGT 4 cut(s) 161, 677, 1199, 1206
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 2 cut(s) 1041, 1183
TasI AATT 6 cut(s) 12, 579, 791, 808, 938, 1152
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 4 cut(s) 20, 170, 552, 688
Tru1I TTAA 7 cut(s) 182, 417, 566, 789, 824, 963, 1142
Tru9I TTAA 7 cut(s) 182, 417, 566, 789, 824, 963, 1142
TscAI CASTG 2 cut(s) 682, 739
TseFI GTSAC 2 cut(s) 269, 1021
TseI GCWGC 3 cut(s) 164, 317, 765
Tsp45I GTSAC 2 cut(s) 269, 1021
TspDTI ATGAA 7 cut(s) 21, 438, 447, 500, 645, 950, 1074
TspRI CASTG 2 cut(s) 682, 739
Vha464I CTTAAG 2 cut(s) 823, 1141
XapI RAATTY 2 cut(s) 791, 938
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
XhoI CTCGAG 1 cut(s) 1040
XmiI GTMKAC 2 cut(s) 1194, 1201
XmnI GAANNNNTTC 1 cut(s) 551
Zsp2I ATGCAT 2 cut(s) 198, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.