RchiOBHm_Chr6g0244931

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
887069 .. 888225
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21951

Sequence Viewer

Length: 309 bp
ATGTCGAGAGGGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGCAGTGAACATGTCACGTTTAATAATTTTTGTCAGTGATTGGATCCGGTCATTGATGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGTATCAAGCTGAAGTTGTTTATACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTGACATTAAATGTTTCTTTAACTTACTCACAGAACCTTTTACACTCTATATATGTTGGATTGCAAGGCTAGGAGTGCACTGTCCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

102

Amino Acids

11.88

Weight (kDa)

4.82

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 85, 98
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 174
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw21I GWGCWC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 2 cut(s) 85, 98
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 39
BfaI CTAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 2 cut(s) 85, 98
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 168
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 297
BstSNI TACGTA 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BtsI GCAGTG 2 cut(s) 37, 57
BtsIMutI CAGTG 4 cut(s) 37, 57, 88, 295
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 152, 286
CviKI_1 RGCY 2 cut(s) 152, 286
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco105I TACGTA 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 174
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 59, 165, 267, 269, 271
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 287
GluI GCNGC 1 cut(s) 28
GsaI CCCAGC 1 cut(s) 190
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 55, 295
Hpy188I TCNGA 2 cut(s) 112, 220
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 2 cut(s) 55, 295
HpyAV CCTTC 3 cut(s) 7, 14, 107
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 64, 167
HpyCH4V TGCA 2 cut(s) 281, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpySE526I ACGT 2 cut(s) 64, 167
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 2 cut(s) 107, 172
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 64, 167
MaeIII GTNAC 1 cut(s) 60
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 2 cut(s) 72, 200
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 3 cut(s) 17, 31, 205
MseI TTAA 4 cut(s) 68, 179, 225, 237
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 60
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Ppu21I YACGTR 1 cut(s) 168
PscI ACATGT 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 90
SaqAI TTAA 4 cut(s) 68, 179, 225, 237
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 297
SetI ASST 4 cut(s) 67, 154, 170, 256
SfaNI GCATC 1 cut(s) 173
SgeI CNNG 9 cut(s) 18, 59, 70, 75, 106, 161, 199, 294, 299
SnaBI TACGTA 1 cut(s) 168
Sse9I AATT 2 cut(s) 72, 200
SspMI CTAG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 2 cut(s) 67, 170
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 72, 200
Tru1I TTAA 4 cut(s) 68, 179, 225, 237
Tru9I TTAA 4 cut(s) 68, 179, 225, 237
TscAI CASTG 4 cut(s) 37, 57, 88, 302
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 60
TspRI CASTG 4 cut(s) 37, 57, 88, 302
VneI GTGCAC 1 cut(s) 293
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.