RchiOBHm_Chr6g0244961

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
908689 .. 910411
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21954

Sequence Viewer

Length: 417 bp
ATGGATCTCTGGCATGTAGCACACTCATTACGTAAACCTTCAGCACGTTTTCAAGCTTTCCATCTGTTAAAACATTCTAAATGTTCTGTTCCAAATGATTCTTCAACAAGCCCAAATAACCAACTCTCCGACCCAATAGCAAGTGCACATGTCTCAGCTAGTATAGATAGACAATACTCAATTGGCCTATATTCTGCTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGAGAAGGCTTTTTTCATGGGGAAGTAGAAGGATTCAAATGTGCATGTTTTCTCAGAAGGACTTATGAAGAGCGAAGACATCAAAAGGAGGTCTTTGGTCCACGCTGTTACCACTTTTTAGCTTATTGCAAACGGGTTTATTCAGGATATGGCGCACCCAAAACAGGCATCAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

138

Amino Acids

15.89

Weight (kDa)

9.65

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 3 cut(s) 53, 105, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 3 cut(s) 56, 158, 359
AluI AGCT 3 cut(s) 56, 158, 359
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 184
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 168, 304
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 167, 303
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 300
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 154, 290
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 4
BstNSI RCATGY 3 cut(s) 17, 152, 285
BstSLI GKGCMC 1 cut(s) 148
BstSNI TACGTA 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 335
CviAII CATG 4 cut(s) 14, 149, 254, 282
CviJI RGCY 6 cut(s) 56, 111, 158, 186, 246, 359
CviKI_1 RGCY 6 cut(s) 56, 111, 158, 186, 246, 359
DdeI CTNAG 2 cut(s) 154, 290
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco105I TACGTA 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 24
FaeI CATG 4 cut(s) 17, 152, 257, 285
FaiI YATR 9 cut(s) 15, 150, 164, 190, 216, 255, 283, 303, 387
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 4 cut(s) 13, 148, 253, 281
Fnu4HI GCNGC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 186
HhaI GCGC 1 cut(s) 392
Hin1II CATG 4 cut(s) 17, 152, 257, 285
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 98, 270
Hpy166II GTNNAC 3 cut(s) 35, 146, 338
Hpy188I TCNGA 2 cut(s) 130, 293
Hpy188III TCNNGA 1 cut(s) 381
Hpy8I GTNNAC 3 cut(s) 35, 146, 338
HpyAV CCTTC 4 cut(s) 48, 236, 260, 288
HpyCH4IV ACGT 2 cut(s) 31, 46
HpyCH4V TGCA 4 cut(s) 146, 214, 281, 366
HpyF3I CTNAG 2 cut(s) 154, 290
HpySE526I ACGT 2 cut(s) 31, 46
Hsp92II CATG 4 cut(s) 17, 152, 257, 285
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 300
LpnPI CCDG 2 cut(s) 366, 387
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 31, 46
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 93, 317, 324
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 319
MseI TTAA 1 cut(s) 68
MunI CAATTG 1 cut(s) 180
NdeII GATC 1 cut(s) 4
NlaIII CATG 4 cut(s) 17, 152, 257, 285
NspI RCATGY 3 cut(s) 17, 152, 285
PciI ACATGT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 98, 270
PkrI GCNGC 1 cut(s) 203
Ppu21I YACGTR 1 cut(s) 32
PscI ACATGT 1 cut(s) 148
PspPI GGNCC 1 cut(s) 335
PsuI RGATCY 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 148
SetI ASST 8 cut(s) 34, 40, 49, 58, 160, 330, 361, 416
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 1 cut(s) 335
SnaBI TACGTA 1 cut(s) 32
Sse9I AATT 1 cut(s) 180
SspMI CTAG 1 cut(s) 159
TaiI ACGT 2 cut(s) 34, 49
TasI AATT 1 cut(s) 180
TfiI GAWTC 2 cut(s) 98, 270
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 242, 318
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 3 cut(s) 17, 152, 285
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.