pycom10g10170

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000376
Physical Location & Seq
Forward (+)
13457792 .. 13461801
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g10170.6

Sequence Viewer

Length: 2826 bp
ATGAGTGGCGCTGCATCTGGCAATATTGATTTCAAAACATCACCTAATTGGCCGAAAGTTTTAAATGACCTGGAGAACTCATCAGCAGTTGTTTCCTCTGACAAACACAACATATTTGACTGTTCCTCGGTAGCAAATTCGGTCACTCATTCTTCTGATAAGCTGCTTGCAGGAAGTTGCAAGGAACAAAAAGCCCTACCATCAAACATCATGAAATTTACAGCTTGCCGAAGTTTACTTAATCTTTTGTGCCACATGCCAAAAGGTCATTTGACTTCAAGATCAATTTCACTTTATGTGACTTCTATTCTCAACCTTGAAAGCTCTCTGATTAAGTGTAGTCTTTGTAGCCATTCAATGAACATATTTGTTAATATTACCTGTTCTGTGTTTTTCAGGCTTCTTGTTGGCGGCTTATTAGATTGTCAGAATGCTTTGAACTCACATCATTATCACAAGCTCTTCAGATTGTTTGTGTCTTGTCGTAAGGCCTTAAAACATGTAATTCTGGCTTGTGAAGAGCAGACAGTAGCTAGTCAAGCCTCACATGCTTCAGTGTTCCTTGAGGATACATTTCCTATTTTATGGCTTTACAAGTCAGTTTATGCGGTTCTTGGGACTCAAGAGTCATTTTCAAAAGATAATCGTCGCCCATTTAATGAAATGATCTTGTCACTGATGGATCACACATTTTTTGTGTTTCTGACATCAAGTAAAAACCAACTTAATCATGTTGTTCATCTCCCTAAAGCTGCTGAACTGAATGCTGAACCTGAAAAGTGTAGCCATTATGCTAACAGTTTGACAGAACAGATGCAAAGCTTACTATTTAATTTGAAGGAGGGCCCTTATAACGGAAAACTTGGGATTGATGTTGATGCTCTAAATTTGAACAAGTTTTCATCCTTAATTTCTTGCCTTAGTGGGCGAGAAATAGTCGATCATGAAGCAAACTCATCACGTTGGAAACTCGAACCCATCACCGAACTCAACCTTTGTACAAATGCTTTTGCAGAATCTTCTAGACTTCTCTTGCAAATGTTGCTTTTGACGATAATCAACAACTGCAACGTTGATTCAGGTGCAGAGGAGTTTTTACCAGAAGGCACTGGTGTTGAGATTGACATTGCACGCAGCGGACTACATAATGAATCAGGAGCTGCAATGACCTGCTCAGCATCACCTGACATCCATGGTAACTCGGGGTCTGGTAGTGTCCGTAGAATAAAGTTACATTTGAAAGGTGCAGTTTTGGCTGCTAGTGCAGTGACTGATGTTGATTCATTTGAATTGCAATTTTTAAATAAGCCTTTGTTGAGGCGCCTGCTAAAAGATGATTATCCGGATGCATCATTTTTGCTCAGGCAGTTTGTTGCATCGTCAGCTATTTTGAGGTTAAGTTTGCATATGAATAGTGCTCCCCTGTCCCCAAGCTTGGTGCATATTTTTACTGGCATCACACAACTCTTGTTGTTGGAATCAGTGGACATGGATCAGGTGCCGCACTTTTTTTATTTTGTGTGTTTAGATGGTGTTCTGAAGTACGTGGAAGAATTGGCGAATCATTTTCCTCTGACTAATCCTACGTTAACCAGAAATTTGTATGACAAGATGGTTCAGCTACAGTTACAGGCACTGGGGAAATGCATAACTTTACAGGGAAAAAGAGCCACCCTGGTATCTCATGAGACAGAGTCGAGCACCAAAATGATCCATTGTCCTATGGGATTTTCTGAAGCTTTTCTGTCTGGCTGGCCATACTTATTGGATGAACTTAAAGCTAGGTTGACGTCATCGTTCACAGTGTTCATAAAGAAACCATCAGAGTTGCATCTTTTATGTGCTCTACAAGCTATAAAGAGAGTCGGTGCGCGGGAAGGGTGCACTACGAGTTATGACATACATACTGGAAGTGTATATGGGGGAAAGGTTTCTTCATTTGTTGCTGCTGGCCTGGATTGCTTGGATTTGGTACTGGAGTTTGTTTCAGGACGCAAACGTTTGAAGGTCGTTCAAAGACACATCCAGAGCTTCATTGGTAGCGCCTTCAATGTCATTCTACACTTGCAAAGTCCAGTAATCTTGTATGAGAGAGTGATCCAGAGGAAAGGTAATACTAATAATGATCCAGATCCAGATCGATCAGTCATTCTTATGTGTGTTGATGTACTGGTTAGAATTTCTGGCAAACATGCTCTGTACCAAATGGAGCCCTGGCATGTAGCACAATCTTTACGTATACCTTCAGCACTTTTTCAAAACTTCCATCTTTTAAAACTTCCGGAGGCTCCCGTTCCTGATGATTCTTCAACAATTCCAAATAACCAAGTTTCTAATCCAGTACCAAGTTTACATTTCTCTGGCATAGATAGGCAATACTCGGTTGACCTGTTTTCTGCCTGCTGCCGGTTGTTGCATAATGTTCTGAAGCATCACAAAAGTGAATATGAACGGTGCGTTGCTATACTTGAAGCTTCTGTTCGTGTACTTCTTCATTGTTCGGAGACAGTGGACGCTGATGCAGTCTTCAAGAAAGGTTTCTTTTCATGGGAAGTGGCTGAGGGAGTCAAATGTGCTGGTAGTCTCCGAAGGATTTACAAAGAGGTAGGTAACTTTTCATATACATGCTTCACTAAAGTTGTATTTATCATCTTAGATTTTGGGTATGTTCCATTACATCGAAAGGGAGAACAAAATGAGATCTTCCTCAGTAGATTTTGTCATATCTGTTTTTCAGATAAGACATCAAAAGGATGTCTTTGGTCCGCACTGTGCCCAATTTTTATACAATTAAGTATGGATTTATTCAGGATATGGCCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

942

Amino Acids

104.89

Weight (kDa)

7.71

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
AasI GACNNNNNNGTC 1 cut(s) 625
AatII GACGTC 1 cut(s) 1793
Acc36I ACCTGC 1 cut(s) 1178
AccB1I GGYRCC 2 cut(s) 1320, 1498
AccI GTMKAC 1 cut(s) 2239
AccII CGCG 1 cut(s) 1873
AccIII TCCGGA 2 cut(s) 1342, 2281
AciI CCGC 6 cut(s) 411, 608, 1137, 1502, 1873, 2766
AclI AACGTT 2 cut(s) 1071, 1999
AclWI GGATC 6 cut(s) 690, 1500, 1705, 2092, 2120, 2126
AcoI YGGCCR 2 cut(s) 50, 1754
AcsI RAATTY 5 cut(s) 136, 215, 886, 1597, 2178
AcuI CTGAAG 6 cut(s) 448, 537, 1559, 1755, 2229, 2447
AcyI GRCGYC 2 cut(s) 1321, 1790
AfaI GTAC 7 cut(s) 1000, 1544, 1974, 2169, 2201, 2343, 2487
AfiI CCNNNNNNNGG 3 cut(s) 854, 1435, 2406
AflIII ACRYGT 1 cut(s) 499
AjnI CCWGG 4 cut(s) 69, 1674, 1953, 2213
AleI CACNNNNGTG 1 cut(s) 2439
Alw21I GWGCWC 4 cut(s) 1420, 1703, 1846, 1886
Alw26I GTCTC 3 cut(s) 1682, 2498, 2588
Alw44I GTGCAC 1 cut(s) 1882
AlwI GGATC 6 cut(s) 690, 1500, 1705, 2092, 2120, 2126
AlwNI CAGNNNCTG 3 cut(s) 1160, 1271, 1636
Ama87I CYCGRG 1 cut(s) 1201
Aor13HI TCCGGA 2 cut(s) 1342, 2281
AoxI GGCC 6 cut(s) 50, 489, 844, 1754, 1951, 2816
ApaI GGGCCC 1 cut(s) 848
ApaLI GTGCAC 1 cut(s) 1882
ApeKI GCWGC 8 cut(s) 11, 163, 752, 1134, 1160, 1256, 1946, 2403
ApoI RAATTY 5 cut(s) 136, 215, 886, 1597, 2178
Asp700I GAANNNNTTC 3 cut(s) 1740, 1930, 2537
AspLEI GCGC 4 cut(s) 11, 1323, 1873, 2045
AspS9I GGNCC 4 cut(s) 844, 845, 2763, 2817
AsuHPI GGTGA 3 cut(s) 33, 973, 1173
AvaI CYCGRG 1 cut(s) 1201
AvaII GGWCC 1 cut(s) 2763
BaeGI GKGCMC 3 cut(s) 848, 1886, 2777
BaeI ACNNNNGTAYC 4 cut(s) 1662, 1695, 1964, 1997
BalI TGGCCA 1 cut(s) 1756
BanI GGYRCC 2 cut(s) 1320, 1498
BanII GRGCYC 2 cut(s) 848, 2214
BbsI GAAGAC 1 cut(s) 2518
Bbv12I GWGCWC 4 cut(s) 1420, 1703, 1846, 1886
BbvCI CCTCAGC 1 cut(s) 2559
BbvI GCAGC 7 cut(s) 150, 739, 1146, 1147, 1243, 1933, 2390
BccI CCATC 7 cut(s) 208, 673, 986, 1523, 1606, 1828, 2274
BciT130I CCWGG 4 cut(s) 71, 1676, 1955, 2215
BciVI GTATCC 1 cut(s) 562
BcoDI GTCTC 3 cut(s) 1682, 2498, 2588
BfaI CTAG 4 cut(s) 534, 1023, 1260, 1782
BfmI CTRYAG 1 cut(s) 1622
BfoI RGCGCY 3 cut(s) 12, 1324, 2046
BfuAI ACCTGC 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 562
BglII AGATCT 1 cut(s) 2700
BlpI GCTNAGC 1 cut(s) 1174
Bme1390I CCNGG 4 cut(s) 71, 1676, 1955, 2215
Bme18I GGWCC 1 cut(s) 2763
BmeT110I CYCGRG 1 cut(s) 1201
BmgT120I GGNCC 4 cut(s) 844, 845, 2763, 2817
BmiI GGNNCC 6 cut(s) 846, 1322, 1500, 2211, 2289, 2819
BmrFI CCNGG 4 cut(s) 71, 1676, 1955, 2215
BmrI ACTGGG 1 cut(s) 1646
BmuI ACTGGG 1 cut(s) 1646
BpiI GAAGAC 1 cut(s) 2518
BpmI CTGGAG 2 cut(s) 92, 1997
Bpu10I CCTNAGC 2 cut(s) 1361, 2559
Bpu1102I GCTNAGC 1 cut(s) 1174
BpuEI CTTGAG 2 cut(s) 584, 606
Bsa29I ATCGAT 1 cut(s) 2140
BsaAI YACGTR 2 cut(s) 1546, 2237
BsaBI GATNNNNATC 3 cut(s) 1338, 2130, 2136
BsaHI GRCGYC 2 cut(s) 1321, 1790
BsaJI CCNNGG 4 cut(s) 126, 1192, 1674, 2213
BsaWI WCCGGW 2 cut(s) 1342, 2281
Bsc4I CCNNNNNNNGG 3 cut(s) 854, 1435, 2406
Bse118I RCCGGY 1 cut(s) 2406
Bse1I ACTGG 8 cut(s) 1114, 1456, 1641, 1912, 1980, 2075, 2175, 2339
Bse3DI GCAATG 2 cut(s) 1125, 1170
Bse8I GATNNNNATC 3 cut(s) 1338, 2130, 2136
BseAI TCCGGA 2 cut(s) 1342, 2281
BseBI CCWGG 4 cut(s) 71, 1676, 1955, 2215
BseCI ATCGAT 1 cut(s) 2140
BseDI CCNNGG 4 cut(s) 126, 1192, 1674, 2213
BseGI GGATG 6 cut(s) 902, 1188, 1351, 1774, 2022, 2759
BseJI GATNNNNATC 3 cut(s) 1338, 2130, 2136
BseLI CCNNNNNNNGG 3 cut(s) 854, 1435, 2406
BseMI GCAATG 2 cut(s) 1125, 1170
BseMII CTCAG 4 cut(s) 1188, 1375, 2550, 2722
BseNI ACTGG 8 cut(s) 1114, 1456, 1641, 1912, 1980, 2075, 2175, 2339
BseRI GAGGAG 1 cut(s) 1103
BseSI GKGCMC 3 cut(s) 848, 1886, 2777
BseXI GCAGC 7 cut(s) 150, 739, 1146, 1147, 1243, 1933, 2390
BsgI GTGCAG 3 cut(s) 1104, 1266, 1284
Bsh1236I CGCG 1 cut(s) 1873
BshFI GGCC 6 cut(s) 52, 491, 846, 1756, 1953, 2818
BshNI GGYRCC 2 cut(s) 1320, 1498
BshVI ATCGAT 1 cut(s) 2140
BsiHKAI GWGCWC 4 cut(s) 1420, 1703, 1846, 1886
BsiHKCI CYCGRG 1 cut(s) 1201
BsiSI CCGG 3 cut(s) 1343, 2282, 2407
BslFI GGGAC 2 cut(s) 631, 1411
BslI CCNNNNNNNGG 3 cut(s) 854, 1435, 2406
BsmAI GTCTC 3 cut(s) 1682, 2498, 2588
BsmFI GGGAC 2 cut(s) 631, 1411
BsmI GAATGC 2 cut(s) 436, 769
BsnI GGCC 6 cut(s) 52, 491, 846, 1756, 1953, 2818
BsoBI CYCGRG 1 cut(s) 1201
Bsp120I GGGCCC 1 cut(s) 844
Bsp1286I GDGCHC 7 cut(s) 848, 1420, 1703, 1846, 1886, 2214, 2777
Bsp13I TCCGGA 2 cut(s) 1342, 2281
Bsp1407I TGTACA 1 cut(s) 998
Bsp1720I GCTNAGC 1 cut(s) 1174
Bsp19I CCATGG 1 cut(s) 1192
BspACI CCGC 6 cut(s) 411, 608, 1137, 1502, 1873, 2766
BspANI GGCC 6 cut(s) 52, 491, 846, 1756, 1953, 2818
BspCNI CTCAG 4 cut(s) 1187, 1374, 2551, 2721
BspDI ATCGAT 1 cut(s) 2140
BspEI TCCGGA 2 cut(s) 1342, 2281
BspFNI CGCG 1 cut(s) 1873
BspHI TCATGA 3 cut(s) 210, 943, 1684
BspLI GGNNCC 6 cut(s) 846, 1322, 1500, 2211, 2289, 2819
BspMI ACCTGC 1 cut(s) 1178
BspPI GGATC 6 cut(s) 690, 1500, 1705, 2092, 2120, 2126
BspQI GCTCTTC 2 cut(s) 467, 513
BspT107I GGYRCC 2 cut(s) 1320, 1498
BsrDI GCAATG 2 cut(s) 1125, 1170
BsrFI RCCGGY 1 cut(s) 2406
BsrGI TGTACA 1 cut(s) 998
BsrI ACTGG 8 cut(s) 1114, 1456, 1641, 1912, 1980, 2075, 2175, 2339
BssAI RCCGGY 1 cut(s) 2406
BssECI CCNNGG 4 cut(s) 126, 1192, 1674, 2213
BssNAI GTATAC 1 cut(s) 2240
BssNI GRCGYC 2 cut(s) 1321, 1790
BssT1I CCWWGG 1 cut(s) 1192
Bst1107I GTATAC 1 cut(s) 2240
Bst2UI CCWGG 4 cut(s) 71, 1676, 1955, 2215
Bst4CI ACNGT 8 cut(s) 122, 529, 800, 1626, 1804, 2454, 2509, 2772
Bst6I CTCTTC 2 cut(s) 467, 513
BstACI GRCGYC 2 cut(s) 1321, 1790
BstAPI GCANNNNNTGC 1 cut(s) 1042
BstAUI TGTACA 1 cut(s) 998
BstBAI YACGTR 2 cut(s) 1546, 2237
BstC8I GCNNGC 7 cut(s) 168, 226, 1132, 1325, 1754, 1951, 2401
BstDEI CTNAG 6 cut(s) 920, 1174, 1361, 2559, 2653, 2708
BstDSI CCRYGG 1 cut(s) 1192
BstF5I GGATG 6 cut(s) 902, 1188, 1351, 1774, 2022, 2759
BstFNI CGCG 1 cut(s) 1873
BstH2I RGCGCY 3 cut(s) 12, 1324, 2046
BstHHI GCGC 4 cut(s) 11, 1323, 1873, 2045
BstMAI GTCTC 3 cut(s) 1682, 2498, 2588
BstMWI GCNNNNNNNGC 8 cut(s) 539, 548, 1042, 1253, 1262, 1382, 1850, 1959
BstNI CCWGG 4 cut(s) 71, 1676, 1955, 2215
BstNSI RCATGY 6 cut(s) 259, 503, 551, 2195, 2222, 2628
BstSCI CCNGG 4 cut(s) 69, 1674, 1953, 2213
BstSFI CTRYAG 1 cut(s) 1622
BstSLI GKGCMC 3 cut(s) 848, 1886, 2777
BstSNI TACGTA 1 cut(s) 2237
BstUI CGCG 1 cut(s) 1873
BstV1I GCAGC 7 cut(s) 150, 739, 1146, 1147, 1243, 1933, 2390
BstV2I GAAGAC 1 cut(s) 2518
BstX2I RGATCY 2 cut(s) 2131, 2700
BstYI RGATCY 2 cut(s) 2131, 2700
BstZ17I GTATAC 1 cut(s) 2240
Bsu15I ATCGAT 1 cut(s) 2140
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 6 cut(s) 52, 491, 846, 1756, 1953, 2818
BsuTUI ATCGAT 1 cut(s) 2140
BtgI CCRYGG 1 cut(s) 1192
BtsCI GGATG 6 cut(s) 902, 1188, 1351, 1774, 2022, 2759
BtsI GCAGTG 1 cut(s) 1272
BtsIMutI CAGTG 9 cut(s) 561, 674, 1107, 1272, 1488, 1634, 1809, 2514, 2768
BveI ACCTGC 1 cut(s) 1178
Cac8I GCNNGC 7 cut(s) 168, 226, 1132, 1325, 1754, 1951, 2401
CaiI CAGNNNCTG 3 cut(s) 1160, 1271, 1636
CciI TCATGA 3 cut(s) 210, 943, 1684
CfoI GCGC 4 cut(s) 11, 1323, 1873, 2045
Cfr10I RCCGGY 1 cut(s) 2406
Cfr13I GGNCC 4 cut(s) 844, 845, 2763, 2817
ClaI ATCGAT 1 cut(s) 2140
CseI GACGC 2 cut(s) 2001, 2522
Csp6I GTAC 7 cut(s) 999, 1543, 1973, 2168, 2200, 2342, 2486
CviQI GTAC 7 cut(s) 999, 1543, 1973, 2168, 2200, 2342, 2486
DdeI CTNAG 6 cut(s) 920, 1174, 1361, 2559, 2653, 2708
DinI GGCGCC 1 cut(s) 1322
DraI TTTAAA 3 cut(s) 63, 1302, 2274
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 2 cut(s) 50, 1754
Eam1104I CTCTTC 2 cut(s) 467, 513
EarI CTCTTC 2 cut(s) 467, 513
Eco105I TACGTA 1 cut(s) 2237
Eco130I CCWWGG 1 cut(s) 1192
Eco147I AGGCCT 1 cut(s) 491
Eco24I GRGCYC 2 cut(s) 848, 2214
Eco47I GGWCC 1 cut(s) 2763
Eco57I CTGAAG 6 cut(s) 448, 537, 1559, 1755, 2229, 2447
Eco88I CYCGRG 1 cut(s) 1201
EcoO109I RGGNCCY 2 cut(s) 844, 845
EcoRII CCWGG 4 cut(s) 69, 1674, 1953, 2213
EcoT14I CCWWGG 1 cut(s) 1192
EcoT22I ATGCAT 2 cut(s) 1351, 1649
EcoT38I GRGCYC 2 cut(s) 848, 2214
EgeI GGCGCC 1 cut(s) 1322
EheI GGCGCC 1 cut(s) 1322
ErhI CCWWGG 1 cut(s) 1192
FalI AAGNNNNNCTT 2 cut(s) 2742, 2774
FaqI GGGAC 2 cut(s) 631, 1411
FauI CCCGC 1 cut(s) 1866
FauNDI CATATG 1 cut(s) 1407
FblI GTMKAC 1 cut(s) 2239
FokI GGATG 6 cut(s) 889, 1175, 1358, 1781, 2009, 2766
FriOI GRGCYC 2 cut(s) 848, 2214
FspBI CTAG 4 cut(s) 534, 1023, 1260, 1782
GlaI GCGC 4 cut(s) 10, 1322, 1872, 2044
GsuI CTGGAG 2 cut(s) 92, 1997
HaeII RGCGCY 3 cut(s) 12, 1324, 2046
HaeIII GGCC 6 cut(s) 52, 491, 846, 1756, 1953, 2818
HapII CCGG 3 cut(s) 1343, 2282, 2407
HgaI GACGC 2 cut(s) 2001, 2522
HhaI GCGC 4 cut(s) 11, 1323, 1873, 2045
Hin1I GRCGYC 2 cut(s) 1321, 1790
Hin6I GCGC 4 cut(s) 9, 1321, 1871, 2043
HinP1I GCGC 4 cut(s) 9, 1321, 1871, 2043
HincII GTYRAC 3 cut(s) 1590, 1788, 2386
HindII GTYRAC 3 cut(s) 1590, 1788, 2386
HindIII AAGCTT 4 cut(s) 820, 1432, 1737, 2472
HpaI GTTAAC 1 cut(s) 1590
HpaII CCGG 3 cut(s) 1343, 2282, 2407
HphI GGTGA 3 cut(s) 33, 973, 1173
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 7 cut(s) 832, 1097, 1871, 1999, 2056, 2253, 2583
HpyCH4III ACNGT 8 cut(s) 122, 529, 800, 1626, 1804, 2454, 2509, 2772
HpyCH4IV ACGT 7 cut(s) 961, 1071, 1545, 1586, 1790, 1999, 2236
HpyF10VI GCNNNNNNNGC 8 cut(s) 539, 548, 1042, 1253, 1262, 1382, 1850, 1959
HpyF3I CTNAG 6 cut(s) 920, 1174, 1361, 2559, 2653, 2708
HpySE526I ACGT 7 cut(s) 961, 1071, 1545, 1586, 1790, 1999, 2236
Hsp92I GRCGYC 2 cut(s) 1321, 1790
HspAI GCGC 4 cut(s) 9, 1321, 1871, 2043
KasI GGCGCC 1 cut(s) 1320
Kpn2I TCCGGA 2 cut(s) 1342, 2281
KspAI GTTAAC 1 cut(s) 1590
LguI GCTCTTC 2 cut(s) 467, 513
LmnI GCTCC 4 cut(s) 1157, 1423, 2209, 2293
Lsp1109I GCAGC 7 cut(s) 150, 739, 1146, 1147, 1243, 1933, 2390
MaeI CTAG 4 cut(s) 534, 1023, 1260, 1782
MaeII ACGT 7 cut(s) 961, 1071, 1545, 1586, 1790, 1999, 2236
MaeIII GTNAC 8 cut(s) 142, 298, 672, 1196, 1230, 1267, 1626, 2609
MflI RGATCY 2 cut(s) 2131, 2700
MhlI GDGCHC 7 cut(s) 848, 1420, 1703, 1846, 1886, 2214, 2777
MlsI TGGCCA 1 cut(s) 1756
MluNI TGGCCA 1 cut(s) 1756
Mly113I GGCGCC 1 cut(s) 1321
MlyI GAGTC 5 cut(s) 613, 635, 1703, 1872, 2574
MmeI TCCRAC 2 cut(s) 944, 1455
Mox20I TGGCCA 1 cut(s) 1756
Mph1103I ATGCAT 2 cut(s) 1351, 1649
MroI TCCGGA 2 cut(s) 1342, 2281
MroXI GAANNNNTTC 3 cut(s) 1740, 1930, 2537
MscI TGGCCA 1 cut(s) 1756
MslI CAYNNNNRTG 4 cut(s) 1706, 2153, 2439, 2623
Msp20I TGGCCA 1 cut(s) 1756
MspA1I CMGCKG 1 cut(s) 1137
MspI CCGG 3 cut(s) 1343, 2282, 2407
MspR9I CCNGG 4 cut(s) 71, 1676, 1955, 2215
Mva1269I GAATGC 2 cut(s) 436, 769
MvaI CCWGG 4 cut(s) 71, 1676, 1955, 2215
MvnI CGCG 1 cut(s) 1873
MwoI GCNNNNNNNGC 8 cut(s) 539, 548, 1042, 1253, 1262, 1382, 1850, 1959
NarI GGCGCC 1 cut(s) 1321
NcoI CCATGG 1 cut(s) 1192
NdeI CATATG 1 cut(s) 1407
NlaIV GGNNCC 6 cut(s) 846, 1322, 1500, 2211, 2289, 2819
NmuCI GTSAC 4 cut(s) 142, 298, 672, 1267
NsiI ATGCAT 2 cut(s) 1351, 1649
NspI RCATGY 6 cut(s) 259, 503, 551, 2195, 2222, 2628
OliI CACNNNNGTG 1 cut(s) 2439
PagI TCATGA 3 cut(s) 210, 943, 1684
PceI AGGCCT 1 cut(s) 491
PciI ACATGT 1 cut(s) 499
PciSI GCTCTTC 2 cut(s) 467, 513
PctI GAATGC 2 cut(s) 436, 769
PdmI GAANNNNTTC 3 cut(s) 1740, 1930, 2537
PfeI GAWTC 7 cut(s) 1016, 1076, 1151, 1280, 1478, 1561, 2303
PflFI GACNNNGTC 1 cut(s) 1693
PleI GAGTC 5 cut(s) 613, 634, 1702, 1871, 2573
PluTI GGCGCC 1 cut(s) 1324
PpsI GAGTC 5 cut(s) 613, 634, 1702, 1871, 2573
Ppu21I YACGTR 2 cut(s) 1546, 2237
PscI ACATGT 1 cut(s) 499
PsiI TTATAA 1 cut(s) 852
Psp1406I AACGTT 2 cut(s) 1071, 1999
Psp6I CCWGG 4 cut(s) 69, 1674, 1953, 2213
PspGI CCWGG 4 cut(s) 69, 1674, 1953, 2213
PspN4I GGNNCC 6 cut(s) 846, 1322, 1500, 2211, 2289, 2819
PspOMI GGGCCC 1 cut(s) 844
PspPI GGNCC 4 cut(s) 844, 845, 2763, 2817
PstNI CAGNNNCTG 3 cut(s) 1160, 1271, 1636
PsuI RGATCY 2 cut(s) 2131, 2700
PsyI GACNNNGTC 1 cut(s) 1693
RsaI GTAC 7 cut(s) 1000, 1544, 1974, 2169, 2201, 2343, 2487
RsaNI GTAC 7 cut(s) 999, 1543, 1973, 2168, 2200, 2342, 2486
RseI CAYNNNNRTG 4 cut(s) 1706, 2153, 2439, 2623
SapI GCTCTTC 2 cut(s) 467, 513
Sau96I GGNCC 4 cut(s) 844, 845, 2763, 2817
SchI GAGTC 5 cut(s) 613, 635, 1703, 1872, 2574
ScrFI CCNGG 4 cut(s) 71, 1676, 1955, 2215
SduI GDGCHC 7 cut(s) 848, 1420, 1703, 1846, 1886, 2214, 2777
SfcI CTRYAG 1 cut(s) 1622
SfoI GGCGCC 1 cut(s) 1322
SinI GGWCC 1 cut(s) 2763
SmiMI CAYNNNNRTG 4 cut(s) 1706, 2153, 2439, 2623
SmlI CTYRAG 2 cut(s) 563, 621
SmoI CTYRAG 2 cut(s) 563, 621
SnaBI TACGTA 1 cut(s) 2237
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 6 cut(s) 411, 608, 1137, 1502, 1873, 2766
SspDI GGCGCC 1 cut(s) 1320
SspI AATATT 2 cut(s) 25, 376
SspMI CTAG 4 cut(s) 534, 1023, 1260, 1782
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 4 cut(s) 69, 1674, 1953, 2213
StyI CCWWGG 1 cut(s) 1192
TaaI ACNGT 8 cut(s) 122, 529, 800, 1626, 1804, 2454, 2509, 2772
TaiI ACGT 7 cut(s) 964, 1074, 1548, 1589, 1793, 2002, 2239
TaqI TCGA 5 cut(s) 939, 972, 1697, 2140, 2680
TaqII GACCGA 1 cut(s) 130
TatI WGTACW 3 cut(s) 998, 2167, 2485
TauI GCSGC 2 cut(s) 414, 1504
TfiI GAWTC 7 cut(s) 1016, 1076, 1151, 1280, 1478, 1561, 2303
TscAI CASTG 9 cut(s) 561, 681, 1114, 1272, 1488, 1641, 1809, 2514, 2775
TseFI GTSAC 4 cut(s) 142, 298, 672, 1267
TseI GCWGC 8 cut(s) 11, 163, 752, 1134, 1160, 1256, 1946, 2403
Tsp45I GTSAC 4 cut(s) 142, 298, 672, 1267
TspGWI ACGGA 2 cut(s) 870, 1208
TspRI CASTG 9 cut(s) 561, 681, 1114, 1272, 1488, 1641, 1809, 2514, 2775
Tth111I GACNNNGTC 1 cut(s) 1693
VneI GTGCAC 1 cut(s) 1882
VpaK11BI GGWCC 1 cut(s) 2763
XapI RAATTY 5 cut(s) 136, 215, 886, 1597, 2178
XbaI TCTAGA 1 cut(s) 1022
XceI RCATGY 6 cut(s) 259, 503, 551, 2195, 2222, 2628
XcmI CCANNNNNNNNNTGG 1 cut(s) 2033
XmiI GTMKAC 1 cut(s) 2239
XmnI GAANNNNTTC 3 cut(s) 1740, 1930, 2537
XspI CTAG 4 cut(s) 534, 1023, 1260, 1782
ZraI GACGTC 1 cut(s) 1791
Zsp2I ATGCAT 2 cut(s) 1351, 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.