MD10G1117500.v1.1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000376
Physical Location & Seq
Forward (+)
19506429 .. 19507516
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1117500.v1.1.491

Sequence Viewer

Length: 954 bp
ATGTTGTCACTGATGGATCACACATTTTATGTGTTTCTGACATCAAGTAAATACCAACTTAATCATGCTGTTTGTCTCCCCAAAGCTGCCGAATTGAATGCTGAACCTGTCTATGAACATAGTAATTCAAGTGAATCTGAACCGTGCTTGGATCCTTTCAAATGTGTTGAAGCCAGGAAAAGTGTAGCCATTATTGCTAAGATTTTGACAGAACAGATGCAAAGCTTACTATTTAATTTGAAGGAGGGCCCTTATAAAGGAAAACTTGGGATTGATGTTGATGCTCTAAATTTGAACAAGTTTTCATCCTTAATTTCTTGCCTTAGTGGGTTTTTATGGGGCCTAGCACTTGTTGTGAACCTTTCAGATGCGAGAAATAGTGATCATGAAGCAAACTCATCACGTCGGAAGCTTGAACCCATCACCGAACTCAACCTTTGTATAAATTCCAGAACTTTATGTGATGCTCAAAATATTCAAAAGACAAACTGCAATGTAGATTCAGGTGCAGAGGAGTTTTTAACAGATGGCACTGGCGTTGAGACTGATATTGCACTCGGCGGACTGCATAATGAATCAGGAGCTGCAATGACCTGCTCAGCATCACCTGACATCCATGATAACTCGGGGTCTGGTAATGTCCGTAGAAGAAAGTTGCATTTGAAAGGTGCAGTTTTGGCTGCCAGTGCATTGACTAATGTTGATTCATTTGAATTGCAATTTTTAAATAAGCCTTTGTTGAGACGCCTGCTAAAAGGTGATTACCTGGACGCAGCATTTTTGCTCAGGCAGTTGTTTGTTGCATCATCAGCTATTTTGAAGTTAAGTTTGCATATGAATAGTGCTCCCCTGTCCCCAAGCTTCGTGTATATTTTTAATGGCGTCACACAACTCTTCTTGTTGGAATCAGTGGACATGGATCAGGTGCCACACTTTTTTTATTTTGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

318

Amino Acids

34.86

Weight (kDa)

5.72

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 925
AciI CCGC 1 cut(s) 561
AclWI GGATC 4 cut(s) 24, 146, 159, 927
AcsI RAATTY 2 cut(s) 289, 445
AcyI GRCGYC 2 cut(s) 745, 882
AfiI CCNNNNNNNGG 1 cut(s) 257
AjiI CACGTC 1 cut(s) 404
AjnI CCWGG 2 cut(s) 173, 765
AluBI AGCT 6 cut(s) 86, 225, 412, 584, 812, 861
AluI AGCT 6 cut(s) 86, 225, 412, 584, 812, 861
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 3 cut(s) 80, 536, 736
AlwI GGATC 4 cut(s) 24, 146, 159, 927
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 625
AoxI GGCC 2 cut(s) 247, 340
ApaI GGGCCC 1 cut(s) 251
ApeKI GCWGC 4 cut(s) 86, 584, 680, 773
ApoI RAATTY 2 cut(s) 289, 445
AspS9I GGNCC 3 cut(s) 247, 248, 340
AsuHPI GGTGA 3 cut(s) 415, 597, 770
AvaI CYCGRG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 4 cut(s) 73, 571, 667, 785
BccI CCATC 3 cut(s) 7, 428, 521
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 175, 767
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 3 cut(s) 80, 536, 736
BfaI CTAG 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 4 cut(s) 87, 585, 681, 774
BlpI GCTNAGC 1 cut(s) 598
BlsI GCNGC 4 cut(s) 88, 586, 682, 775
Bme1390I CCNGG 2 cut(s) 175, 767
BmeT110I CYCGRG 1 cut(s) 625
BmgBI CACGTC 1 cut(s) 404
BmgT120I GGNCC 3 cut(s) 247, 248, 340
BmiI GGNNCC 4 cut(s) 153, 249, 341, 927
BmrFI CCNGG 2 cut(s) 175, 767
BmsI GCATC 6 cut(s) 207, 271, 358, 454, 611, 812
Bpu10I CCTNAGC 1 cut(s) 785
Bpu1102I GCTNAGC 1 cut(s) 598
BsaHI GRCGYC 2 cut(s) 745, 882
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 538, 684
Bse3DI GCAATG 2 cut(s) 499, 594
BseBI CCWGG 2 cut(s) 175, 767
BseGI GGATG 2 cut(s) 305, 612
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 499, 594
BseMII CTCAG 2 cut(s) 612, 799
BseNI ACTGG 2 cut(s) 538, 684
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 4 cut(s) 73, 571, 667, 785
BsgI GTGCAG 2 cut(s) 528, 690
BshFI GGCC 2 cut(s) 249, 342
BshNI GGYRCC 1 cut(s) 925
BsiHKAI GWGCWC 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 625
BslFI GGGAC 1 cut(s) 838
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 3 cut(s) 80, 536, 736
BsmBI CGTCTC 1 cut(s) 736
BsmFI GGGAC 1 cut(s) 838
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 2 cut(s) 249, 342
BsoBI CYCGRG 1 cut(s) 625
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 251, 847
Bsp143I GATC 4 cut(s) 16, 151, 382, 919
Bsp1720I GCTNAGC 1 cut(s) 598
BspACI CCGC 1 cut(s) 561
BspANI GGCC 2 cut(s) 249, 342
BspCNI CTCAG 2 cut(s) 611, 798
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 4 cut(s) 153, 249, 341, 927
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 4 cut(s) 24, 146, 159, 927
BspT107I GGYRCC 1 cut(s) 925
BsrDI GCAATG 2 cut(s) 499, 594
BsrI ACTGG 2 cut(s) 538, 684
BssMI GATC 4 cut(s) 16, 151, 382, 919
BssNI GRCGYC 2 cut(s) 745, 882
Bst2UI CCWGG 2 cut(s) 175, 767
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 899
BstACI GRCGYC 2 cut(s) 745, 882
BstC8I GCNNGC 1 cut(s) 749
BstDEI CTNAG 4 cut(s) 198, 323, 598, 785
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 305, 612
BstKTI GATC 4 cut(s) 19, 154, 385, 922
BstMAI GTCTC 3 cut(s) 80, 536, 736
BstMBI GATC 4 cut(s) 16, 151, 382, 919
BstMWI GCNNNNNNNGC 4 cut(s) 194, 677, 686, 809
BstNI CCWGG 2 cut(s) 175, 767
BstSCI CCNGG 2 cut(s) 173, 765
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 4 cut(s) 73, 571, 667, 785
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 2 cut(s) 249, 342
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 2 cut(s) 305, 612
BtsIMutI CAGTG 4 cut(s) 8, 531, 691, 915
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 749
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 385
Cfr13I GGNCC 3 cut(s) 247, 248, 340
CseI GACGC 3 cut(s) 753, 779, 871
CviAII CATG 4 cut(s) 65, 386, 617, 916
DdeI CTNAG 4 cut(s) 198, 323, 598, 785
DpnI GATC 4 cut(s) 18, 153, 384, 921
DpnII GATC 4 cut(s) 16, 151, 382, 919
DraI TTTAAA 1 cut(s) 726
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
EciI GGCGGA 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 625
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO109I RGGNCCY 3 cut(s) 247, 248, 340
EcoRII CCWGG 2 cut(s) 173, 765
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 736
FaeI CATG 4 cut(s) 68, 389, 620, 919
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 838
FatI CATG 4 cut(s) 64, 385, 616, 915
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 87, 585, 681, 774
FokI GGATG 2 cut(s) 292, 599
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 87, 585, 681, 774
FspBI CTAG 1 cut(s) 344
GluI GCNGC 4 cut(s) 87, 585, 681, 774
HaeIII GGCC 2 cut(s) 249, 342
HgaI GACGC 3 cut(s) 753, 779, 871
Hin1I GRCGYC 2 cut(s) 745, 882
Hin1II CATG 4 cut(s) 68, 389, 620, 919
HindIII AAGCTT 3 cut(s) 223, 410, 859
HinfI GANTC 5 cut(s) 134, 500, 575, 704, 905
HphI GGTGA 3 cut(s) 415, 597, 770
Hpy166II GTNNAC 2 cut(s) 358, 913
Hpy188I TCNGA 4 cut(s) 39, 139, 367, 408
Hpy188III TCNNGA 3 cut(s) 386, 450, 579
Hpy8I GTNNAC 2 cut(s) 358, 913
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 677, 686, 809
HpyF3I CTNAG 4 cut(s) 198, 323, 598, 785
HpySE526I ACGT 1 cut(s) 403
Hsp92I GRCGYC 2 cut(s) 745, 882
Hsp92II CATG 4 cut(s) 68, 389, 620, 919
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 16, 151, 382, 919
LmnI GCTCC 2 cut(s) 581, 850
Lsp1109I GCAGC 4 cut(s) 73, 571, 667, 785
LweI GCATC 6 cut(s) 207, 271, 358, 454, 611, 812
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 2 cut(s) 6, 883
MalI GATC 4 cut(s) 18, 153, 384, 921
MboI GATC 4 cut(s) 16, 151, 382, 919
MboII GAAGA 2 cut(s) 660, 886
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 251, 847
MluCI AATT 8 cut(s) 92, 124, 235, 289, 312, 445, 713, 719
MmeI TCCRAC 2 cut(s) 386, 882
MnlI CCTC 2 cut(s) 238, 505
MseI TTAA 8 cut(s) 60, 234, 311, 521, 725, 824, 876, 952
MspR9I CCNGG 2 cut(s) 175, 767
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 2 cut(s) 175, 767
MwoI GCNNNNNNNGC 4 cut(s) 194, 677, 686, 809
NdeI CATATG 1 cut(s) 834
NdeII GATC 4 cut(s) 16, 151, 382, 919
NlaIII CATG 4 cut(s) 68, 389, 620, 919
NlaIV GGNNCC 4 cut(s) 153, 249, 341, 927
NmeAIII GCCGAG 1 cut(s) 537
NmuCI GTSAC 2 cut(s) 6, 883
PagI TCATGA 1 cut(s) 385
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 5 cut(s) 134, 500, 575, 704, 905
PkrI GCNGC 4 cut(s) 88, 586, 682, 775
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 173, 765
PspGI CCWGG 2 cut(s) 173, 765
PspN4I GGNNCC 4 cut(s) 153, 249, 341, 927
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 247, 248, 340
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 151
SaqAI TTAA 8 cut(s) 60, 234, 311, 521, 725, 824, 876, 952
SatI GCNGC 4 cut(s) 87, 585, 681, 774
Sau3AI GATC 4 cut(s) 16, 151, 382, 919
Sau96I GGNCC 3 cut(s) 247, 248, 340
ScrFI CCNGG 2 cut(s) 175, 767
SduI GDGCHC 2 cut(s) 251, 847
SfaNI GCATC 6 cut(s) 207, 271, 358, 454, 611, 812
Sse9I AATT 8 cut(s) 92, 124, 235, 289, 312, 445, 713, 719
SsiI CCGC 1 cut(s) 561
SspI AATATT 1 cut(s) 475
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 173, 765
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 406
TasI AATT 8 cut(s) 92, 124, 235, 289, 312, 445, 713, 719
TfiI GAWTC 5 cut(s) 134, 500, 575, 704, 905
Tru1I TTAA 8 cut(s) 60, 234, 311, 521, 725, 824, 876, 952
Tru9I TTAA 8 cut(s) 60, 234, 311, 521, 725, 824, 876, 952
TscAI CASTG 4 cut(s) 15, 538, 691, 915
TseFI GTSAC 2 cut(s) 6, 883
TseI GCWGC 4 cut(s) 86, 584, 680, 773
Tsp45I GTSAC 2 cut(s) 6, 883
TspDTI ATGAA 6 cut(s) 129, 294, 402, 588, 696, 851
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 4 cut(s) 15, 538, 691, 915
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 2 cut(s) 289, 445
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.