MD10G1117600.v1.1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000376
Physical Location & Seq
Forward (+)
19507518 .. 19508820
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1117600.v1.1.491

Sequence Viewer

Length: 333 bp
ATGAGTTATGACATACATACTGGAAGTGTAGATGGGGGAAAGGTTTCTTCATTTGTTGCTGCTGGCCTGGATTGCTTGGATTTGGTACTGGAGTTTGTTTCAGGACGCAAACGTTTGAAGGTCGTTCAAAGACACATCCAGAGCTTCATTGCTAGCGCCTTCAATGTTATTCTACACTTGCAAAGTCCAGTAATCTTTTATGAGAGAATGATCCAGAGGAAAGGTGATACTAATAATGATCCAGATCCAGGATCAGTCATTCTTATGTGTGTTGATGTACTGGTTAGAATTTCTGGCAAACATGCTCTGTACCAAATGGACCCTGCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

111

Amino Acids

12.18

Weight (kDa)

6.89

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 112
AclWI GGATC 4 cut(s) 205, 233, 239, 259
AcsI RAATTY 1 cut(s) 288
AfaI GTAC 3 cut(s) 87, 279, 311
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 118, 128, 163
AjnI CCWGG 2 cut(s) 66, 247
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AlwI GGATC 4 cut(s) 205, 233, 239, 259
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 236
AsuNHI GCTAGC 1 cut(s) 152
AvaII GGWCC 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 68, 249
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 68, 249
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 68, 249
BmtI GCTAGC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 4 cut(s) 25, 93, 188, 285
Bse3DI GCAATG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 2 cut(s) 68, 249
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 4 cut(s) 25, 93, 188, 285
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 248
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 4 cut(s) 210, 238, 244, 251
BspANI GGCC 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 321
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 4 cut(s) 205, 233, 239, 259
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 4 cut(s) 25, 93, 188, 285
BssMI GATC 4 cut(s) 210, 238, 244, 251
Bst2UI CCWGG 2 cut(s) 68, 249
BstC8I GCNNGC 2 cut(s) 64, 154
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 4 cut(s) 213, 241, 247, 254
BstMBI GATC 4 cut(s) 210, 238, 244, 251
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 2 cut(s) 68, 249
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 66, 247
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 64, 154
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 86, 278, 310
CviAII CATG 2 cut(s) 302, 328
CviJI RGCY 2 cut(s) 66, 144
CviKI_1 RGCY 2 cut(s) 66, 144
CviQI GTAC 3 cut(s) 86, 278, 310
DpnI GATC 4 cut(s) 212, 240, 246, 253
DpnII GATC 4 cut(s) 210, 238, 244, 251
Eco47I GGWCC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 66, 247
FaeI CATG 2 cut(s) 305, 331
FaiI YATR 7 cut(s) 9, 14, 18, 201, 266, 303, 329
FatI CATG 2 cut(s) 301, 327
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 66
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 305, 331
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HphI GGTGA 1 cut(s) 236
Hpy188III TCNNGA 4 cut(s) 102, 139, 214, 242
HpyAV CCTTC 2 cut(s) 112, 169
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 2 cut(s) 305, 331
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 4 cut(s) 210, 238, 244, 251
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 112
MalI GATC 4 cut(s) 212, 240, 246, 253
MboI GATC 4 cut(s) 210, 238, 244, 251
MboII GAAGA 1 cut(s) 39
MflI RGATCY 1 cut(s) 244
MluCI AATT 1 cut(s) 288
MnlI CCTC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 43
MslI CAYNNNNRTG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 68, 249
MvaI CCWGG 2 cut(s) 68, 249
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 4 cut(s) 210, 238, 244, 251
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 305, 331
NlaIV GGNNCC 1 cut(s) 321
NspI RCATGY 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 1 cut(s) 61
Psp1406I AACGTT 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 66, 247
PspGI CCWGG 2 cut(s) 66, 247
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 3 cut(s) 87, 279, 311
RsaNI GTAC 3 cut(s) 86, 278, 310
RseI CAYNNNNRTG 1 cut(s) 263
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 4 cut(s) 210, 238, 244, 251
Sau96I GGNCC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 68, 249
SetI ASST 5 cut(s) 45, 115, 123, 146, 226
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 1 cut(s) 288
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 66, 247
TaiI ACGT 1 cut(s) 115
TasI AATT 1 cut(s) 288
TatI WGTACW 1 cut(s) 277
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 39, 136
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.