Rh6DG021000

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Forward (+)
1847689 .. 1849462
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG021000.1

Sequence Viewer

Length: 450 bp
ATGACATGTGCTGGAAGTGAAGATGGTGGAAAGGTTTCTTCAATTGTTGCATCTCGCATTGATTGCTTGCATTTGGTTCTGGAATTTGTTTCAGCCATACAGAAGTATGAATTAAATGCAAAGGACATATTACCACATGGGAAGAAAAGTGCACATAGTCCACTAATCTTCTATGGATTCACTCGGAGTAAAGATGATAATGATCCAGATCCAGGAAAAGTCATTCTTATTGAATGCGAGGGGTATGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTCTTTATTGCTTGGAGACATTGGATGTTGTTGTGGTAGCCAGGGAAGGCTTTTTTTCATGGGAAGTAGAAGGAGGAGTCAAATGTGCATGTTTTCTCAGAAGGATTTATGAAGAGGATATGGCCCACCCAAAACAGGCTTCAAAAGCGAACATAAAAGGCATAGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

149

Amino Acids

16.38

Weight (kDa)

5.57

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 197, 203
AcsI RAATTY 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 212, 412
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 4 cut(s) 42, 233, 260, 420
AjnI CCWGG 2 cut(s) 211, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 287
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 2 cut(s) 197, 203
AoxI GGCC 1 cut(s) 399
ApaLI GTGCAC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 400
BaeGI GKGCMC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 2 cut(s) 213, 319
BcoDI GTCTC 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 213, 319
BmgT120I GGNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 213, 319
BmsI GCATC 1 cut(s) 59
BsaBI GATNNNNATC 2 cut(s) 201, 207
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 412
Bse8I GATNNNNATC 2 cut(s) 201, 207
BseBI CCWGG 2 cut(s) 213, 319
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 2 cut(s) 201, 207
BseLI CCNNNNNNNGG 2 cut(s) 212, 412
BseMII CTCAG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 154
BshFI GGCC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 212, 412
BsmAI GTCTC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 202, 208
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 387
BspPI GGATC 2 cut(s) 197, 203
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 2 cut(s) 202, 208
Bst2UI CCWGG 2 cut(s) 213, 319
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 205, 211
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 202, 208
BstMWI GCNNNNNNNGC 2 cut(s) 63, 422
BstNI CCWGG 2 cut(s) 213, 319
BstNSI RCATGY 2 cut(s) 9, 369
BstSCI CCNGG 2 cut(s) 211, 317
BstSLI GKGCMC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 400
CviAII CATG 4 cut(s) 6, 137, 336, 366
CviJI RGCY 6 cut(s) 95, 263, 317, 327, 401, 416
CviKI_1 RGCY 6 cut(s) 95, 263, 317, 327, 401, 416
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 204, 210
DpnII GATC 2 cut(s) 202, 208
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 211, 317
FaeI CATG 4 cut(s) 9, 140, 339, 369
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 4 cut(s) 5, 136, 335, 365
FokI GGATG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 401
Hin1II CATG 4 cut(s) 9, 140, 339, 369
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 2 cut(s) 177, 354
Hpy166II GTNNAC 2 cut(s) 152, 161
Hpy188I TCNGA 2 cut(s) 186, 377
Hpy188III TCNNGA 2 cut(s) 80, 206
Hpy8I GTNNAC 2 cut(s) 152, 161
HpyAV CCTTC 3 cut(s) 317, 341, 372
HpyCH4V TGCA 5 cut(s) 50, 70, 119, 152, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 422
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 4 cut(s) 9, 140, 339, 369
Kzo9I GATC 2 cut(s) 202, 208
LpnPI CCDG 7 cut(s) 65, 198, 219, 225, 304, 331, 398
LweI GCATC 1 cut(s) 59
MalI GATC 2 cut(s) 204, 210
MboI GATC 2 cut(s) 202, 208
MboII GAAGA 6 cut(s) 30, 32, 154, 160, 269, 401
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 3 cut(s) 42, 83, 110
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 3 cut(s) 232, 344, 385
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 2 cut(s) 113, 448
MspR9I CCNGG 2 cut(s) 213, 319
MunI CAATTG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 2 cut(s) 213, 319
MwoI GCNNNNNNNGC 2 cut(s) 63, 422
NdeII GATC 2 cut(s) 202, 208
NlaIII CATG 4 cut(s) 9, 140, 339, 369
NspI RCATGY 2 cut(s) 9, 369
PciI ACATGT 1 cut(s) 5
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 211
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PscI ACATGT 1 cut(s) 5
Psp6I CCWGG 2 cut(s) 211, 317
PspGI CCWGG 2 cut(s) 211, 317
PspPI GGNCC 1 cut(s) 400
PsuI RGATCY 1 cut(s) 208
SaqAI TTAA 2 cut(s) 113, 448
Sau3AI GATC 2 cut(s) 202, 208
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 2 cut(s) 213, 319
SduI GDGCHC 1 cut(s) 154
SetI ASST 2 cut(s) 36, 265
SfaNI GCATC 1 cut(s) 59
Sse9I AATT 3 cut(s) 42, 83, 110
StyD4I CCNGG 2 cut(s) 211, 317
TasI AATT 3 cut(s) 42, 83, 110
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 113, 448
Tru9I TTAA 2 cut(s) 113, 448
TspDTI ATGAA 3 cut(s) 123, 324, 402
VneI GTGCAC 1 cut(s) 150
XapI RAATTY 1 cut(s) 83
XceI RCATGY 2 cut(s) 9, 369
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.