Rh6CG024200

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2220578 .. 2221636
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG024200.1

Sequence Viewer

Length: 1059 bp
ATGGCTTGTGAAAGGCTTGTGGATTTGAATAGTGGTATAAAGTCTTTTGAATATTTGATTGAAAATGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAAGAGGCAGCAGGACTCACGGGATTTATGATGGAGCACCTCGCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACGACTAATAATAAGATGGTTAACTATGAAAGTGATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAGTATTCATGCATGGTGCCCTCATGCCTCTAAAAAGGATTTGAAGAGATTCCTTTCTCTTTTAATCCATACTTCAATTCCCCATGGAAGAAGCAGCTTTGGGGTGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGGCATTGCATCAAATCTCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGAGTAAGCATCTTTCAAAGATCAAATGGTGCTTCCCCTGACCCTCACGTGATGTACATGCACACACACAAAGTCGTATCTTGCAGAATATTTTTATTTATATCTTTTTGGGGATTCTTTATTGTTTTTTCACACACACAAAATACAGTCAAACCTCAGACACTGTACTCTTTGGATTTATTTCCAGTTTCATGGCTTTACAAGTCAGTGCATATGGTTGCTGGGCTTCAAGAATCATTCTCAAAAGATATTTATCATCATGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCCAATCTTGCTGTTCGTTTCCTTGAGGTTGCTAAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAACCTTGCTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGGAAATGTGAAGAATGGAATTTGTAATGGCAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

352

Amino Acids

40.24

Weight (kDa)

6.62

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 4 cut(s) 874, 910, 1008, 1048
AcuI CTGAAG 2 cut(s) 183, 464
AcvI CACGTG 1 cut(s) 553
AfaI GTAC 2 cut(s) 560, 671
AjnI CCWGG 1 cut(s) 932
AleI CACNNNNGTG 1 cut(s) 286
AluBI AGCT 3 cut(s) 399, 434, 871
AluI AGCT 3 cut(s) 399, 434, 871
Alw21I GWGCWC 2 cut(s) 147, 420
AlwI GGATC 1 cut(s) 801
AlwNI CAGNNNCTG 1 cut(s) 667
ApeKI GCWGC 3 cut(s) 116, 396, 953
ApoI RAATTY 4 cut(s) 874, 910, 1008, 1048
Asp700I GAANNNNTTC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 2 cut(s) 323, 889
BanI GGYRCC 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 553
Bbv12I GWGCWC 2 cut(s) 147, 420
BbvI GCAGC 3 cut(s) 128, 408, 940
BccI CCATC 2 cut(s) 133, 205
BciT130I CCWGG 1 cut(s) 934
BfaI CTAG 1 cut(s) 1057
BglII AGATCT 2 cut(s) 93, 981
BisI GCNGC 3 cut(s) 117, 397, 954
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 3 cut(s) 118, 398, 955
Bme1390I CCNGG 1 cut(s) 934
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 934
BmsI GCATC 4 cut(s) 469, 522, 966, 1030
Bpu1102I GCTNAGC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 553
BsaBI GATNNNNATC 2 cut(s) 756, 980
BsaJI CCNNGG 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 489, 689
Bse3DI GCAATG 2 cut(s) 269, 455
Bse8I GATNNNNATC 2 cut(s) 756, 980
BseBI CCWGG 1 cut(s) 934
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 887
BseJI GATNNNNATC 2 cut(s) 756, 980
BseMI GCAATG 2 cut(s) 269, 455
BseMII CTCAG 1 cut(s) 674
BseNI ACTGG 2 cut(s) 489, 689
BseSI GKGCMC 2 cut(s) 323, 889
BseXI GCAGC 3 cut(s) 128, 408, 940
BseYI CCCAGC 1 cut(s) 725
BsgI GTGCAG 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 147, 420
Bsp1286I GDGCHC 4 cut(s) 147, 323, 420, 889
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 6 cut(s) 93, 166, 524, 777, 793, 981
Bsp1720I GCTNAGC 1 cut(s) 867
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 673
BspHI TCATGA 1 cut(s) 769
BspLI GGNNCC 1 cut(s) 320
BspPI GGATC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 269, 455
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 2 cut(s) 489, 689
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 6 cut(s) 93, 166, 524, 777, 793, 981
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 934
Bst4CI ACNGT 3 cut(s) 474, 652, 669
Bst6I CTCTTC 2 cut(s) 103, 341
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 660, 867, 957
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 887
BstKTI GATC 6 cut(s) 96, 169, 527, 780, 796, 984
BstMBI GATC 6 cut(s) 93, 166, 524, 777, 793, 981
BstNI CCWGG 1 cut(s) 934
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 932
BstSLI GKGCMC 2 cut(s) 323, 889
BstV1I GCAGC 3 cut(s) 128, 408, 940
BstX2I RGATCY 2 cut(s) 93, 981
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 2 cut(s) 93, 981
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 887
BtsIMutI CAGTG 3 cut(s) 479, 665, 717
CaiI CAGNNNCTG 1 cut(s) 667
CciI TCATGA 1 cut(s) 769
Csp6I GTAC 2 cut(s) 559, 670
CviAII CATG 9 cut(s) 311, 315, 326, 386, 428, 562, 696, 764, 770
CviJI RGCY 9 cut(s) 5, 16, 399, 434, 442, 700, 730, 871, 932
CviKI_1 RGCY 9 cut(s) 5, 16, 399, 434, 442, 700, 730, 871, 932
CviQI GTAC 2 cut(s) 559, 670
DdeI CTNAG 3 cut(s) 660, 867, 957
DpnI GATC 6 cut(s) 95, 168, 526, 779, 795, 983
DpnII GATC 6 cut(s) 93, 166, 524, 777, 793, 981
DraI TTTAAA 1 cut(s) 1047
Eam1104I CTCTTC 2 cut(s) 103, 341
EarI CTCTTC 2 cut(s) 103, 341
Eco130I CCWWGG 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 183, 464
Eco72I CACGTG 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 910
EcoRII CCWGG 1 cut(s) 932
EcoT14I CCWWGG 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 9 cut(s) 314, 318, 329, 389, 431, 565, 699, 767, 773
FatI CATG 9 cut(s) 310, 314, 325, 385, 427, 561, 695, 763, 769
FauNDI CATATG 1 cut(s) 717
Fnu4HI GCNGC 3 cut(s) 117, 397, 954
FokI GGATG 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 117, 397, 954
FspBI CTAG 1 cut(s) 1057
GluI GCNGC 3 cut(s) 117, 397, 954
GsaI CCCAGC 1 cut(s) 729
Hin1II CATG 9 cut(s) 314, 318, 329, 389, 431, 565, 699, 767, 773
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 5 cut(s) 123, 351, 485, 618, 737
HpaI GTTAAC 1 cut(s) 217
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 217, 259, 946
Hpy188I TCNGA 3 cut(s) 163, 663, 816
Hpy188III TCNNGA 2 cut(s) 734, 770
Hpy8I GTNNAC 3 cut(s) 217, 259, 946
HpyAV CCTTC 1 cut(s) 961
HpyCH4III ACNGT 3 cut(s) 474, 652, 669
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 8 cut(s) 82, 281, 314, 460, 565, 588, 715, 979
HpyF3I CTNAG 3 cut(s) 660, 867, 957
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 9 cut(s) 314, 318, 329, 389, 431, 565, 699, 767, 773
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 6 cut(s) 93, 166, 524, 777, 793, 981
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 9 cut(s) 62, 105, 424, 502, 555, 702, 711, 919, 946
Lsp1109I GCAGC 3 cut(s) 128, 408, 940
LweI GCATC 4 cut(s) 469, 522, 966, 1030
MaeI CTAG 1 cut(s) 1057
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 68
MalI GATC 6 cut(s) 95, 168, 526, 779, 795, 983
MboI GATC 6 cut(s) 93, 166, 524, 777, 793, 981
MboII GAAGA 6 cut(s) 90, 176, 358, 402, 457, 1012
MflI RGATCY 2 cut(s) 93, 981
MhlI GDGCHC 4 cut(s) 147, 323, 420, 889
MluCI AATT 6 cut(s) 378, 874, 910, 919, 1008, 1048
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 9 cut(s) 99, 106, 158, 333, 340, 558, 669, 853, 1018
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 5 cut(s) 216, 365, 788, 821, 1046
MslI CAYNNNNRTG 2 cut(s) 286, 768
MspR9I CCNGG 1 cut(s) 934
MvaI CCWGG 1 cut(s) 934
NcoI CCATGG 1 cut(s) 385
NdeI CATATG 1 cut(s) 717
NdeII GATC 6 cut(s) 93, 166, 524, 777, 793, 981
NlaIII CATG 9 cut(s) 314, 318, 329, 389, 431, 565, 699, 767, 773
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 565
OliI CACNNNNGTG 1 cut(s) 286
PagI TCATGA 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 4 cut(s) 351, 485, 618, 737
PkrI GCNGC 3 cut(s) 118, 398, 955
PleI GAGTC 1 cut(s) 117
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
PpsI GAGTC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 932
PspCI CACGTG 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 1 cut(s) 932
PspN4I GGNNCC 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 2 cut(s) 93, 981
RsaI GTAC 2 cut(s) 560, 671
RsaNI GTAC 2 cut(s) 559, 670
RseI CAYNNNNRTG 2 cut(s) 286, 768
SaqAI TTAA 5 cut(s) 216, 365, 788, 821, 1046
SatI GCNGC 3 cut(s) 117, 397, 954
Sau3AI GATC 6 cut(s) 93, 166, 524, 777, 793, 981
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 934
SduI GDGCHC 4 cut(s) 147, 323, 420, 889
SetI ASST 8 cut(s) 150, 401, 436, 555, 661, 864, 873, 951
SfaNI GCATC 4 cut(s) 469, 522, 966, 1030
SmiMI CAYNNNNRTG 2 cut(s) 286, 768
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 6 cut(s) 378, 874, 910, 919, 1008, 1048
SsiI CCGC 1 cut(s) 89
SspI AATATT 3 cut(s) 53, 180, 594
SspMI CTAG 1 cut(s) 1057
StyD4I CCNGG 1 cut(s) 932
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 3 cut(s) 474, 652, 669
TaiI ACGT 1 cut(s) 555
TasI AATT 6 cut(s) 378, 874, 910, 919, 1008, 1048
TatI WGTACW 2 cut(s) 558, 669
TfiI GAWTC 4 cut(s) 351, 485, 618, 737
Tru1I TTAA 5 cut(s) 216, 365, 788, 821, 1046
Tru9I TTAA 5 cut(s) 216, 365, 788, 821, 1046
TscAI CASTG 3 cut(s) 479, 672, 717
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 116, 396, 953
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 7 cut(s) 172, 237, 246, 299, 444, 684, 758
TspRI CASTG 3 cut(s) 479, 672, 717
XapI RAATTY 4 cut(s) 874, 910, 1008, 1048
XceI RCATGY 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 1057
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.