Rh6CG020400

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Forward (+)
1928049 .. 1929822
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG020400.1

Sequence Viewer

Length: 321 bp
ATGACATGTGCTGGAAGTGAAGATGGTGGAAAGGTTTCTTCAATTGTTGCATCTCGCATTGATTGCTTGCATTTGGTTCTGGAATTTGTTTCAGTTTCTAGTGAATGCGAGGGGTATGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTCTTTATTGCTTGGAGACATTGGATGTTGTTGTGGTAGCCAGGGAAGGCTTTTTTTCATGGGAAGTAGAAGGAGGAGTCAAATGTGCATGTTTTCTCAGAAGGATTTATGAAGAGGATATGGCCCACCCAAAACAGGCTTCAAAAGCGAACATAAAAGGCATAGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

106

Amino Acids

11.52

Weight (kDa)

4.96

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 3 cut(s) 42, 131, 291
AjnI CCWGG 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 271
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 237
BshFI GGCC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 272
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 63, 293
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 2 cut(s) 9, 240
BstSCI CCNGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 3 cut(s) 6, 207, 237
CviJI RGCY 5 cut(s) 134, 188, 198, 272, 287
CviKI_1 RGCY 5 cut(s) 134, 188, 198, 272, 287
DdeI CTNAG 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 9, 210, 240
FaiI YATR 8 cut(s) 7, 117, 208, 238, 258, 269, 302, 311
FatI CATG 3 cut(s) 5, 206, 236
FokI GGATG 1 cut(s) 185
FspBI CTAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 3 cut(s) 9, 210, 240
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 188, 212, 243
HpyCH4V TGCA 3 cut(s) 50, 70, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 293
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 3 cut(s) 9, 210, 240
LpnPI CCDG 4 cut(s) 65, 175, 202, 269
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 99
MboII GAAGA 4 cut(s) 30, 32, 140, 272
MfeI CAATTG 1 cut(s) 42
MluCI AATT 2 cut(s) 42, 83
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 3 cut(s) 103, 215, 256
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 190
MunI CAATTG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 63, 293
NlaIII CATG 3 cut(s) 9, 210, 240
NspI RCATGY 2 cut(s) 9, 240
PciI ACATGT 1 cut(s) 5
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PscI ACATGT 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspPI GGNCC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 190
SetI ASST 2 cut(s) 36, 136
SfaNI GCATC 1 cut(s) 59
Sse9I AATT 2 cut(s) 42, 83
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 188
TasI AATT 2 cut(s) 42, 83
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 195, 273
XapI RAATTY 1 cut(s) 83
XceI RCATGY 2 cut(s) 9, 240
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.