Rmu_sc0000471.1_g000006

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000471.1
OG0000376
Physical Location & Seq
Reverse (-)
38793 .. 41269
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000471.1_g000006.1.cds

Sequence Viewer

Length: 960 bp
atgttgtcaagcttggtgcataagtttgctgggattatgcaagtcttgttattggaatcagcggacccaattcaggtgccacacttctattattttgtgtgtttagatggtgttctgaagtatctggaagaattagggaatcattttcctttgactaatcctaccttatccagagatctgtttgacaagatggttcagctacagttacgggctctagggaaatgcataactttacaagggaaaagagcaactcttgcatctcatgaaacaagcaccaacacacccataggagtaaggagattttttgaagcatcatctttttctggctgggaatatttattggatgaattcaaagctagattgaggtcatcattggcagtgttcataaagaaatcaacagagttgcatctccactctgcagttcaagctatcgaaagagccctagttggtgtgcgggaagggtgcacagtgaggtatgacatatgtgctggaagtgaagatagaggaaaggtttcttcaattgttgctgaatgcgaggggtatgttgctctacttcaagcttctgttcgtgttcttctttattgtttggagacattggatgctgttgtggtagccagggaaggcttcttttcatgggaagtagaaggagtcaagtgtgcatgttctctcagaaggatttatgaagagctaagacatcaaaaagaggtctttggtccacactgttaccactttttaggttattacatacgggtttattcaggatatggcccccgcaaaacaggcatcaaaagggaaatagatgaagctctaagaccaggtgtatatgcgctgatacatgtttgctcacctgatgatcttcaacgtcttcataccacatttggagagggtccttgcagaaacactttggcaaccttgaagcaccattatgaactcaatttccagtaccggggaaaagtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

319

Amino Acids

36.19

Weight (kDa)

8.23

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 3 cut(s) 62, 454, 772
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 1 cut(s) 944
AfiI CCNNNNNNNGG 2 cut(s) 73, 946
AflIII ACRYGT 1 cut(s) 835
AgsI TTSAA 7 cut(s) 308, 352, 425, 519, 557, 860, 916
AjnI CCWGG 2 cut(s) 614, 814
AloI GAACNNNNNNTCC 2 cut(s) 921, 953
AluBI AGCT 7 cut(s) 12, 199, 356, 428, 560, 688, 806
AluI AGCT 7 cut(s) 12, 199, 356, 428, 560, 688, 806
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 584
Alw44I GTGCAC 1 cut(s) 463
AoxI GGCC 1 cut(s) 766
ApaLI GTGCAC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 511
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 4 cut(s) 64, 713, 767, 887
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 1 cut(s) 837
AvaII GGWCC 3 cut(s) 64, 713, 887
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 214, 442
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 467
BccI CCATC 2 cut(s) 101, 184
BciT130I CCWGG 2 cut(s) 616, 816
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 3 cut(s) 215, 357, 443
BfmI CTRYAG 2 cut(s) 200, 417
BglII AGATCT 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 616, 816, 947
Bme18I GGWCC 3 cut(s) 64, 713, 887
BmgT120I GGNCC 4 cut(s) 64, 713, 767, 887
BmiI GGNNCC 4 cut(s) 66, 78, 769, 888
BmrFI CCNGG 3 cut(s) 616, 816, 947
BmsI GCATC 5 cut(s) 266, 320, 415, 589, 792
BpiI GAAGAC 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 947
BsaJI CCNNGG 2 cut(s) 615, 946
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 946
Bse1I ACTGG 1 cut(s) 940
BseBI CCWGG 2 cut(s) 616, 816
BseDI CCNNGG 2 cut(s) 615, 946
BseGI GGATG 2 cut(s) 349, 604
BseLI CCNNNNNNNGG 2 cut(s) 73, 946
BseMII CTCAG 1 cut(s) 682
BseNI ACTGG 1 cut(s) 940
BseSI GKGCMC 1 cut(s) 467
BseYI CCCAGC 2 cut(s) 29, 327
BshFI GGCC 1 cut(s) 768
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 1 cut(s) 946
BslI CCNNNNNNNGG 2 cut(s) 73, 946
BsmAI GTCTC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 1 cut(s) 768
Bsp1286I GDGCHC 3 cut(s) 214, 442, 467
Bsp143I GATC 2 cut(s) 175, 853
BspACI CCGC 3 cut(s) 62, 454, 772
BspANI GGCC 1 cut(s) 768
BspCNI CTCAG 1 cut(s) 681
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 4 cut(s) 66, 78, 769, 888
BspMAI CTGCAG 1 cut(s) 421
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 940
BssECI CCNNGG 2 cut(s) 615, 946
BssMI GATC 2 cut(s) 175, 853
Bst2UI CCWGG 2 cut(s) 616, 816
Bst4CI ACNGT 3 cut(s) 204, 469, 722
Bst6I CTCTTC 1 cut(s) 678
BstAPI GCANNNNNTGC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 668, 689, 809
BstF5I GGATG 2 cut(s) 349, 604
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 2 cut(s) 178, 856
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 2 cut(s) 175, 853
BstMWI GCNNNNNNNGC 3 cut(s) 254, 425, 780
BstNI CCWGG 2 cut(s) 616, 816
BstNSI RCATGY 2 cut(s) 663, 839
BstSCI CCNGG 3 cut(s) 614, 814, 945
BstSFI CTRYAG 2 cut(s) 200, 417
BstSLI GKGCMC 1 cut(s) 467
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 768
BtsCI GGATG 2 cut(s) 349, 604
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 3 cut(s) 384, 474, 718
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 829
Cfr13I GGNCC 4 cut(s) 64, 713, 767, 887
CsiI ACCWGGT 1 cut(s) 814
Csp6I GTAC 1 cut(s) 943
CviAII CATG 4 cut(s) 263, 633, 660, 836
CviQI GTAC 1 cut(s) 943
DdeI CTNAG 3 cut(s) 668, 689, 809
DpnI GATC 2 cut(s) 177, 855
DpnII GATC 2 cut(s) 175, 853
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco24I GRGCYC 2 cut(s) 214, 442
Eco47I GGWCC 3 cut(s) 64, 713, 887
Eco57I CTGAAG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 887
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 614, 814
EcoT22I ATGCAT 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 214, 442
FaeI CATG 4 cut(s) 266, 636, 663, 839
FatI CATG 4 cut(s) 262, 632, 659, 835
FauI CCCGC 2 cut(s) 447, 779
FauNDI CATATG 1 cut(s) 482
FokI GGATG 2 cut(s) 356, 611
FriOI GRGCYC 2 cut(s) 214, 442
FspBI CTAG 3 cut(s) 215, 357, 443
GlaI GCGC 1 cut(s) 828
GsaI CCCAGC 2 cut(s) 33, 331
HaeIII GGCC 1 cut(s) 768
HapII CCGG 1 cut(s) 946
HhaI GCGC 1 cut(s) 829
Hin1II CATG 4 cut(s) 266, 636, 663, 839
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HindIII AAGCTT 2 cut(s) 10, 558
HinfI GANTC 3 cut(s) 56, 139, 648
HpaII CCGG 1 cut(s) 946
HphI GGTGA 1 cut(s) 837
Hpy166II GTNNAC 2 cut(s) 465, 716
Hpy188I TCNGA 2 cut(s) 117, 671
Hpy188III TCNNGA 4 cut(s) 125, 171, 263, 759
Hpy8I GTNNAC 2 cut(s) 465, 716
HpyAV CCTTC 4 cut(s) 452, 614, 638, 666
HpyCH4III ACNGT 3 cut(s) 204, 469, 722
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 9 cut(s) 19, 40, 225, 257, 406, 419, 465, 659, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 425, 780
HpyF3I CTNAG 3 cut(s) 668, 689, 809
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 4 cut(s) 266, 636, 663, 839
HspAI GCGC 1 cut(s) 827
Kzo9I GATC 2 cut(s) 175, 853
LguI GCTCTTC 1 cut(s) 678
LweI GCATC 5 cut(s) 266, 320, 415, 589, 792
MabI ACCWGGT 1 cut(s) 814
MaeI CTAG 3 cut(s) 215, 357, 443
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 2 cut(s) 204, 722
MalI GATC 2 cut(s) 177, 855
MboI GATC 2 cut(s) 175, 853
MboII GAAGA 7 cut(s) 140, 507, 509, 566, 695, 848, 857
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 3 cut(s) 214, 442, 467
MluCI AATT 5 cut(s) 69, 131, 347, 519, 934
MlyI GAGTC 1 cut(s) 657
MnlI CCTC 6 cut(s) 357, 465, 497, 529, 697, 877
Mph1103I ATGCAT 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 511
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 946
MspR9I CCNGG 3 cut(s) 616, 816, 947
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 2 cut(s) 616, 816
MwoI GCNNNNNNNGC 3 cut(s) 254, 425, 780
NciI CCSGG 1 cut(s) 947
NdeI CATATG 1 cut(s) 482
NdeII GATC 2 cut(s) 175, 853
NlaIII CATG 4 cut(s) 266, 636, 663, 839
NlaIV GGNNCC 4 cut(s) 66, 78, 769, 888
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 2 cut(s) 663, 839
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 835
PciSI GCTCTTC 1 cut(s) 678
PctI GAATGC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 511
PfeI GAWTC 2 cut(s) 56, 139
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
PpuMI RGGWCCY 1 cut(s) 887
PscI ACATGT 1 cut(s) 835
Psp5II RGGWCCY 1 cut(s) 887
Psp6I CCWGG 2 cut(s) 614, 814
PspFI CCCAGC 2 cut(s) 29, 327
PspGI CCWGG 2 cut(s) 614, 814
PspN4I GGNNCC 4 cut(s) 66, 78, 769, 888
PspPI GGNCC 4 cut(s) 64, 713, 767, 887
PspPPI RGGWCCY 1 cut(s) 887
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 944
RsaNI GTAC 1 cut(s) 943
RseI CAYNNNNRTG 1 cut(s) 924
SapI GCTCTTC 1 cut(s) 678
Sau3AI GATC 2 cut(s) 175, 853
Sau96I GGNCC 4 cut(s) 64, 713, 767, 887
SchI GAGTC 1 cut(s) 657
ScrFI CCNGG 3 cut(s) 616, 816, 947
SduI GDGCHC 3 cut(s) 214, 442, 467
SexAI ACCWGGT 1 cut(s) 814
SfaNI GCATC 5 cut(s) 266, 320, 415, 589, 792
SfcI CTRYAG 2 cut(s) 200, 417
SinI GGWCC 3 cut(s) 64, 713, 887
SmiMI CAYNNNNRTG 1 cut(s) 924
Sse9I AATT 5 cut(s) 69, 131, 347, 519, 934
SsiI CCGC 3 cut(s) 62, 454, 772
SspI AATATT 1 cut(s) 335
SspMI CTAG 3 cut(s) 215, 357, 443
StyD4I CCNGG 3 cut(s) 614, 814, 945
TaaI ACNGT 3 cut(s) 204, 469, 722
TaiI ACGT 1 cut(s) 865
TaqI TCGA 1 cut(s) 432
TasI AATT 5 cut(s) 69, 131, 347, 519, 934
TfiI GAWTC 2 cut(s) 56, 139
TscAI CASTG 3 cut(s) 384, 474, 725
TspDTI ATGAA 8 cut(s) 279, 360, 373, 621, 696, 816, 857, 942
TspRI CASTG 3 cut(s) 384, 474, 725
VneI GTGCAC 1 cut(s) 463
VpaK11BI GGWCC 3 cut(s) 64, 713, 887
XapI RAATTY 1 cut(s) 347
XceI RCATGY 2 cut(s) 663, 839
XmnI GAANNNNTTC 1 cut(s) 511
XspI CTAG 3 cut(s) 215, 357, 443
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.