Rmu_sc0000471.1_g000008

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000471.1
OG0000376
Physical Location & Seq
Reverse (-)
46874 .. 47731
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000471.1_g000008.1.cds

Sequence Viewer

Length: 486 bp
atggccgattctggagctaaccctaaacagagacaacccaagaagaacaagaagaagagaaagcagaggggacccgaagaatctgaaaggccacccaaaactaaccgcaccaattcaccagagaaaaagaatgaaccacaaggccaaaactttgaagttggaaaagctgaagaacccaatcaaggtggtccatggaggaacctggagttgattctgtcaatccagaacagagagcttgatcttcacaagaaggtggaactagctcatggttttgtgatgtcgagggtgaaggaaggaggcagcagtgatgagggtaatcaagcggtgaacatgtcacgtttaattatatttgtcagtgattgggtccaatccttgttgatttccgaaggaaagaaagttgagaatggtggagagaagcatcaagctgaagttatatatacgtatttggatttaagatgctgggagattttcaaattctgtttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

161

Amino Acids

18.41

Weight (kDa)

9.2

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 106, 323
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 2 cut(s) 189, 447
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 2 cut(s) 155, 472
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 5 cut(s) 17, 167, 235, 263, 425
AluI AGCT 5 cut(s) 17, 167, 235, 263, 425
Alw26I GTCTC 1 cut(s) 25
AoxI GGCC 3 cut(s) 3, 89, 142
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 473
AspS9I GGNCC 3 cut(s) 71, 188, 364
AsuHPI GGTGA 3 cut(s) 108, 298, 337
AvaII GGWCC 3 cut(s) 71, 188, 364
BbvI GCAGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 3 cut(s) 71, 188, 364
BmgT120I GGNCC 3 cut(s) 71, 188, 364
BmiI GGNNCC 4 cut(s) 72, 73, 200, 365
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 427, 446
BpmI CTGGAG 2 cut(s) 33, 224
BsaAI YACGTR 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 459
BshFI GGCC 3 cut(s) 5, 91, 144
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 3 cut(s) 5, 91, 144
Bsp143I GATC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 2 cut(s) 106, 323
BspANI GGCC 3 cut(s) 5, 91, 144
BspLI GGNNCC 4 cut(s) 72, 73, 200, 365
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 441
BstDSI CCRYGG 1 cut(s) 191
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 201
BstSNI TACGTA 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 312
BsuRI GGCC 3 cut(s) 5, 91, 144
BtgI CCRYGG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 310, 361
Cfr13I GGNCC 3 cut(s) 71, 188, 364
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 192, 266, 331
CviJI RGCY 8 cut(s) 5, 17, 91, 144, 167, 235, 263, 425
CviKI_1 RGCY 8 cut(s) 5, 17, 91, 144, 167, 235, 263, 425
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 71, 188, 364
Eco57I CTGAAG 2 cut(s) 189, 447
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 3 cut(s) 195, 269, 334
FaiI YATR 7 cut(s) 193, 267, 332, 347, 434, 436, 438
FaqI GGGAC 1 cut(s) 84
FatI CATG 3 cut(s) 191, 265, 330
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 301
GsaI CCCAGC 1 cut(s) 463
GsuI CTGGAG 2 cut(s) 33, 224
HaeIII GGCC 3 cut(s) 5, 91, 144
Hin1II CATG 3 cut(s) 195, 269, 334
HinfI GANTC 3 cut(s) 8, 80, 211
HphI GGTGA 3 cut(s) 108, 298, 337
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 85, 385
Hpy188III TCNNGA 2 cut(s) 12, 223
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 4 cut(s) 244, 283, 287, 380
HpyCH4IV ACGT 2 cut(s) 337, 440
HpySE526I ACGT 2 cut(s) 337, 440
Hsp92II CATG 3 cut(s) 195, 269, 334
KflI GGGWCCC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 5 cut(s) 132, 188, 215, 236, 445
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 427, 446
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 337, 440
MaeIII GTNAC 1 cut(s) 333
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 6 cut(s) 55, 64, 67, 89, 182, 233
MluCI AATT 3 cut(s) 112, 342, 473
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 5 cut(s) 60, 189, 276, 290, 304
MseI TTAA 2 cut(s) 341, 452
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 191
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 195, 269, 334
NlaIV GGNNCC 4 cut(s) 72, 73, 200, 365
NmuCI GTSAC 1 cut(s) 333
NspI RCATGY 1 cut(s) 334
PciI ACATGT 1 cut(s) 330
PfeI GAWTC 3 cut(s) 8, 80, 211
PkrI GCNGC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 441
PpuMI RGGWCCY 1 cut(s) 71
PscI ACATGT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 4 cut(s) 72, 73, 200, 365
PspPI GGNCC 3 cut(s) 71, 188, 364
PspPPI RGGWCCY 1 cut(s) 71
SaqAI TTAA 2 cut(s) 341, 452
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 3 cut(s) 71, 188, 364
ScrFI CCNGG 1 cut(s) 203
SfaNI GCATC 2 cut(s) 427, 446
SinI GGWCC 3 cut(s) 71, 188, 364
SnaBI TACGTA 1 cut(s) 441
Sse9I AATT 3 cut(s) 112, 342, 473
SsiI CCGC 2 cut(s) 106, 323
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 191
TaiI ACGT 2 cut(s) 340, 443
TaqI TCGA 1 cut(s) 281
TasI AATT 3 cut(s) 112, 342, 473
TfiI GAWTC 3 cut(s) 8, 80, 211
Tru1I TTAA 2 cut(s) 341, 452
Tru9I TTAA 2 cut(s) 341, 452
TscAI CASTG 2 cut(s) 310, 361
TseFI GTSAC 1 cut(s) 333
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 2 cut(s) 310, 361
VpaK11BI GGWCC 3 cut(s) 71, 188, 364
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 334
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.