Rmu_sc0002202.1_g000019

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000376
Physical Location & Seq
Reverse (-)
94152 .. 96735
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000019.1.cds

Sequence Viewer

Length: 726 bp
atggttcagctacagttacaggctctagggagatgcataactttacaagggaaaagagcaactcctgcatctcaggaaacaagcaccaacacacccttaggagaaagaagattttctgaagcatcatctttttctggttgggaatatttattggatgaattcaaagctaggttgaggtcatcattcagagtgttcataaagaaatcaacagagttgcatctccaatctgcagttcaagctatcgaaagagccctagttggtgcgcgggaagggtgcacaatgaggtatgacatatgtgctggaagtgaagatggaggaaaggtttcttcaattgttgcatatgccattgattgcttggatttggttctggaatttctttcaggtaatattatatcacacatttataaagctgaatgcgaggggtatgttgctctacttcaagcttctgttcgtgttcttctttattgtttggagacattggatgctgttgtggtagccagggaaggcttattttcatgggaagtagaagaaggagtcaaatgtgcatttcctcgcagaaggatttatgaagagtctgaaccaggtgtatatgcgctgatagatgtttgctcacctgatgatcttcaaggtcttcataccacatttggagggggtccttgcagaaacactttggcaaccttgaagcacgattacgaactcaatttccagtaccagggaaaagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

241

Amino Acids

26.77

Weight (kDa)

5.36

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccII CGCG 1 cut(s) 265
AciI CCGC 1 cut(s) 265
AcsI RAATTY 2 cut(s) 158, 371
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 6 cut(s) 163, 236, 330, 440, 626, 682
AjnI CCWGG 3 cut(s) 497, 580, 711
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AloI GAACNNNNNNTCC 2 cut(s) 687, 719
AluBI AGCT 5 cut(s) 10, 167, 239, 410, 443
AluI AGCT 5 cut(s) 10, 167, 239, 410, 443
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 467
Alw44I GTGCAC 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 274
ApoI RAATTY 2 cut(s) 158, 371
Asp700I GAANNNNTTC 2 cut(s) 112, 322
AspLEI GCGC 2 cut(s) 265, 595
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 1 cut(s) 603
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 278
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 3 cut(s) 499, 582, 713
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 3 cut(s) 26, 168, 254
BfmI CTRYAG 2 cut(s) 11, 228
Bme1390I CCNGG 3 cut(s) 499, 582, 713
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 3 cut(s) 499, 582, 713
BmsI GCATC 5 cut(s) 23, 77, 131, 226, 472
BpiI GAAGAC 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 498, 712
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 706
Bse21I CCTNAGG 1 cut(s) 97
BseBI CCWGG 3 cut(s) 499, 582, 713
BseDI CCNNGG 2 cut(s) 498, 712
BseGI GGATG 2 cut(s) 160, 487
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 706
BseSI GKGCMC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 253, 278
Bsp143I GATC 1 cut(s) 619
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 85
BspFNI CGCG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 654
BspMAI CTGCAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 706
BssECI CCNNGG 2 cut(s) 498, 712
BssMI GATC 1 cut(s) 619
Bst2UI CCWGG 3 cut(s) 499, 582, 713
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 72, 97
BstF5I GGATG 2 cut(s) 160, 487
BstFNI CGCG 1 cut(s) 265
BstHHI GCGC 2 cut(s) 265, 595
BstKTI GATC 1 cut(s) 622
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 2 cut(s) 65, 236
BstNI CCWGG 3 cut(s) 499, 582, 713
BstSCI CCNGG 3 cut(s) 497, 580, 711
BstSFI CTRYAG 2 cut(s) 11, 228
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 623
Bsu36I CCTNAGG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 160, 487
CfoI GCGC 2 cut(s) 265, 595
Cfr13I GGNCC 1 cut(s) 653
CsiI ACCWGGT 1 cut(s) 580
Csp6I GTAC 1 cut(s) 709
CviAII CATG 1 cut(s) 516
CviJI RGCY 9 cut(s) 10, 23, 167, 239, 251, 410, 443, 497, 507
CviKI_1 RGCY 9 cut(s) 10, 23, 167, 239, 251, 410, 443, 497, 507
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 2 cut(s) 72, 97
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 497, 580, 711
EcoT22I ATGCAT 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 1 cut(s) 519
FatI CATG 1 cut(s) 515
FauI CCCGC 1 cut(s) 258
FauNDI CATATG 2 cut(s) 293, 340
FokI GGATG 2 cut(s) 167, 494
FriOI GRGCYC 1 cut(s) 253
FspBI CTAG 3 cut(s) 26, 168, 254
GlaI GCGC 2 cut(s) 264, 594
HhaI GCGC 2 cut(s) 265, 595
Hin1II CATG 1 cut(s) 519
Hin6I GCGC 2 cut(s) 263, 593
HinP1I GCGC 2 cut(s) 263, 593
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 2 cut(s) 534, 572
HphI GGTGA 1 cut(s) 603
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 118, 188, 577, 725
Hpy188III TCNNGA 2 cut(s) 74, 368
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 4 cut(s) 263, 497, 524, 552
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 8 cut(s) 36, 68, 217, 230, 276, 338, 545, 660
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 236
HpyF3I CTNAG 2 cut(s) 72, 97
Hsp92II CATG 1 cut(s) 519
HspAI GCGC 2 cut(s) 263, 593
Kzo9I GATC 1 cut(s) 619
LweI GCATC 5 cut(s) 23, 77, 131, 226, 472
MabI ACCWGGT 1 cut(s) 580
MaeI CTAG 3 cut(s) 26, 168, 254
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 8 cut(s) 120, 318, 320, 449, 539, 581, 614, 623
MfeI CAATTG 1 cut(s) 330
MhlI GDGCHC 2 cut(s) 253, 278
MluCI AATT 4 cut(s) 158, 330, 371, 700
MlyI GAGTC 2 cut(s) 543, 581
MnlI CCTC 6 cut(s) 168, 276, 308, 412, 561, 641
Mph1103I ATGCAT 1 cut(s) 38
MroXI GAANNNNTTC 2 cut(s) 112, 322
MspR9I CCNGG 3 cut(s) 499, 582, 713
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 3 cut(s) 499, 582, 713
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 65, 236
NdeI CATATG 2 cut(s) 293, 340
NdeII GATC 1 cut(s) 619
NlaIII CATG 1 cut(s) 519
NlaIV GGNNCC 1 cut(s) 654
NsiI ATGCAT 1 cut(s) 38
PctI GAATGC 1 cut(s) 419
PdmI GAANNNNTTC 2 cut(s) 112, 322
PleI GAGTC 2 cut(s) 542, 580
PpsI GAGTC 2 cut(s) 542, 580
PpuMI RGGWCCY 1 cut(s) 653
PsiI TTATAA 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 3 cut(s) 497, 580, 711
PspGI CCWGG 3 cut(s) 497, 580, 711
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 1 cut(s) 653
PspPPI RGGWCCY 1 cut(s) 653
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 2 cut(s) 543, 581
ScrFI CCNGG 3 cut(s) 499, 582, 713
SduI GDGCHC 2 cut(s) 253, 278
SexAI ACCWGGT 1 cut(s) 580
SfaNI GCATC 5 cut(s) 23, 77, 131, 226, 472
SfcI CTRYAG 2 cut(s) 11, 228
SinI GGWCC 1 cut(s) 653
Sse9I AATT 4 cut(s) 158, 330, 371, 700
SsiI CCGC 1 cut(s) 265
SspI AATATT 2 cut(s) 146, 388
SspMI CTAG 3 cut(s) 26, 168, 254
StyD4I CCNGG 3 cut(s) 497, 580, 711
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 243
TasI AATT 4 cut(s) 158, 330, 371, 700
TspDTI ATGAA 5 cut(s) 171, 184, 504, 582, 623
VneI GTGCAC 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 653
XapI RAATTY 2 cut(s) 158, 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XmnI GAANNNNTTC 2 cut(s) 112, 322
XspI CTAG 3 cut(s) 26, 168, 254
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.