Rmu_sc0002202.1_g000009

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000376
Physical Location & Seq
Reverse (-)
32269 .. 41438
9170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000009.1.cds

Sequence Viewer

Length: 5751 bp
atggccgattctaaacagagacaacccaagaagaacaagaagaagagaaagcagagcggacccgcagaatctgaaaggccacccaaaactaaccgcaccaattcatcagagaacgagaatgaaccacaagaccaaaactttgtagttggaagagctgaaaaacccaatcaaggtggtccatggaggaacctggagttgattctgtcaatccagaacagagagcttgatcttcacaagaaggtggaactagctcatggttttgtgatgtcgagggtgaaggaagaaggaggcagcggtgatgaggataatcaagcagtgaacatgtcacgtttactaatttttgtcagtgattggatccagtcattgttgatttccgaaggaaagaaagttgagagtggtggagagaagcatcaagctgaagttatttatacgtatttggatttaagatgctgggagattttcaaattctgtttggaggagtctctgaaattaaatgtttcgttaagtttctcacggagcgcactgtccttattgaacaaaaaaattattggtgaagggttacaattgtacactactgtgcttgattgtatttctttggtattttcatcccaagaaggcttctcaaatgaaaatatagacatgtggattacaactgtaagttcagttcttgaccttggacacaaattttacagtgaagctcttgttagtggcaatgagggtgtatttgttttccaattcttgtgcttggtgcttgagccatttgccaggtttttaagggctcacgctcggaaagatggatttcgtgattttagtaataagcttcttgaacctctgttgcatctcttgggtctcttgcatctccagattggtggaagtaatcctggttggagaagaaacttactgaagcttgttgaagatgtattatctcatgggctatatcacccgctccacattgatgggtttttgagcttatgcagtactgaaaaagacaccacatccaatgagaggactgtgtcagttgtaagagatgtgaatccgcctgtccccgaatccggctgctggtgcgggcttatacctggctggatgggactttctaaatgcgggacgaaatccggaagccaattgctggctctgaataaccagccgttcaattcaattcttcggaagtcaaaagattccaaaacaatcaaccagagttatcatagacatttatttgataaagtggaaggaattttagctgcaaagaatgcatttgcagtagaaagcataggagtattgtttcacttgcttattgatcaagttaaaaagctaaagagggattcagcgctgactgcaagtaccaaaatgatggggaagagtgaaggttcaaggcagttagaagatagttcattgggtcaaacgtctatgatgtcttctgagagtcgtattgttgaaaagaattattgctcaactagtttcaatccaggaacacgaaagtcacttcacgatttttttgtactgattatggagcctcttttgcttgagatcaatggctttcttgaaactaaactgaaagtgggccctgaattgttggatattcattgcacacttaaagctgtaaataatgtacttttggtctttatgcatgaaaagatttatctgagaacagaggatgcctctgagggagcttctcttaatttcttgaagaaggtttataatattatcatctcattgtcctcagatttaattcagttgtcagttacacactcagatagtttttctctaattgcaagtgaggtactttctgctgttggctatcttttggaaattgagtatgatgttctggagaatgatctagtaaacttgtggttgatgatcctctcttactgggccatcgggctttctttggtggattctccggatagatgctcattattctccatgataacagatattggatgccaattaattatgctctatagtcaacttcgccagtttttttgtacttgtgattgtgattgtaatcccattggttctcctattgcaccattgcacgtgaataatactatctttgcattctataaagcaataagggttattaatttacataatagcgatggtgaactgaactatactagatttgtcattccttttcatggtgaagaatatgcaaaagctgtggaaatgctattatctgcacatgaattcaaaattgcaatacataaagcaatgaagtccataccagaaggacaagaaagtcggtgtattcggcagttaacattggatatatcagaatctcttgagtggatgaaagttagttgttcggaggctgatgaaaaagaattttctgaatgccatctaagtagcttgcacagttttaatctggaagctgaacttttcaggagagggttgtcagaaatatatgcattattcctagagtcattgattgtcacaactggaaactgtaaccttcttggcgcttctataaaggaattaattagagtgattttcccttgcatgagcaatctggttggaccacagcaggaggatgttgtaaacaaattcctatggtctgtcgcggtaaaagattctgacaatgtgatctctagaaacaaaaacaaatatctgatatttggagtctccacttattgggtagttttgttcttctttcgattgtatagctccagccgatgcttatataggcaagcagcaatccttatgcctccagatttatcaagaaatatgtctgcagaaataggagattcgttctcctcattctctggcagggattggatggaaatgtctgattggatcaatgggggatttttctcttggattgtacaaccttcagcttctcttctttctgttattaaaactgtttcaaacatcttttgtaaggaccgtgcagctgattcttgtcctttaacttatgtaatgcatgctattgcttgtgaaaggcttgtggatttgaatagtcgtataaagtcttttgaatatttgattgaaaatggtgacaatctggtgcaaattgcggagatctcttctttgaggcaagaggcagctggactcacgggattcatgatggagcacctctcattagtgtctgaagatcaacagcgaatgttcatttctgctgatccgactaataataagatggttaactatgaaagtgatgaatgggatttcagtatttgctctgttaacaagaagtcattgccaactgcactttggtgggttgtttgccaaaatattcatgcatggtgccctcatgcctctaaaaaggatttgaagagattcctttctcttttaatccatacttcaattccctatgtaagaagcagctttggggtggttatagagcacaagaaccatgaagctgacaggctgaagaatgtggcattgcatcaaatctcatcacagtgctttattgattccagtctgtatgagcaaagatttgtcagcaggtattttgcaaagaggttctgctgtgcattggagaaatctacattaccattcatcagcgactttccatccggcaatgttaaattcaaatcatcacctaattggccgaatgtcttaagtgatttagagaactcatcattgcctatttcctgcaacaaactcaatgtatttgattgttcctcagcctcaagttgcacgggacaaaactcccaaccatctaccatcatgaaatttacagcttgtcagagtttgcttaatcttttgagttgtatgccaaaaggtcatttggacacgagatcattttcacgttatgtgacttctattctgaacctcgaaaggattgttgttggcggcttattagattatcagaatgcttcatactcaacttattattatgagctcttcagattgtttgtgtcctgtcggaaggccttaagatgtataattactgcttgtgaggagacagtagccagtcgaacctcagacactgtactctttgaggatttatttccagtttcatggctttacaagtcagtgcatatggttgctgggcttcaagaatcattctcaaaagatatttatcatcaagtccatgatatgatcttggcgttaatggatcacacattttatgtgtttctgacattaaataaatatcaatccaatcatgctgttcgtttccttgaggttgctgagctgaattttggatgtgcccaagaactgagaagtttattgaattcgtccaattattttgaagcctggaaaagtgtaaatgttgttgctaagattttgaaggaacagatgcagatcttacttgtaaatgtgaagaatggcatttgtaatggaaaagaggaagtttctgttgatactttaaatttgaacaagtttgcttccataatttcgtgttttagtgggtttttatggggcctagcttgtgttttgatcgacacagaagggagaaatagtgatgagaaagctaagttgtcgaggtggaaacttgaaccaatctccgaactcaacctctgtataaaggtttttgaagaaatttctagtcttctactacaaatgtttattcttgacgataatcagcagtccacagctatatgtcatgcctataatcttccgaagtcaggctacaatttagatttgttgggtgcagagaagattttgccagaaggcaatgatactgacactgatatggcatgtggtcgactgccggatgaatctgcagttgcagtgacgtgctcagcatcatctgacatctgtgatgactctttaatttgtagtgttcatagaagaagaccacacttgaaagatgcaaatagtgttgttagtgttctcactgctgttgattcatttgaactgcaatttttaaataagcctttgttgagaagcatgctaaaaggtgatttccccaacgcagcatttttactcaggcagttgttaatcgcctcttctgctattttgaggctaaatttgcgtattaagagcgctcccatgttgtcatgcttggtgcataagtttgctggcattatgcaagtcttgttattggaatcagcggaccaaattcaggtgccacacttctattattttgtgtgtttagatggtgttctgaagtatctggaagaattagggaatcattttcctttgtctaatcctgccttatccagagatttgtttgacaagatggttcagctacaattacgggccctagggaaatgcataactttacaagggaaaagagcaactcttgcatctcatgaaacaagcaccaacacacccataggagaaaggagattttctgaagcatcatctctttctggctgggaatatttattggatgaattcaaagctaggttgaggtcatcattcgccgtgttcataaagaaatcaacagagttgcatctccaatctgcagttaaagctatcgaaagagccctagttggtgtgcaagaagggtgcacagtgaggtatgacatatgtgcaggaaatgaagatggaggaaaggtttcttcaattgttgcatctggcattgattgcttggatttggttctggaatttgtttcaggagccccttcttcatacccagttctggtcttcttggcagtgacctgttgtacttcttctttgtcaactttgatctcgtcttttgaggtcgaagcccccaaatttgagatcaattttggtctcatagccgcaccattgctgtcgcttgccattgttcattggttgtcatcaatggaaacgaagaagccctatatgacgccaccatgttggaagtgcaagcatgcttgtaagtgtggctacttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

1916

Amino Acids

215.23

Weight (kDa)

6.19

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1695
AasI GACNNNNNNGTC 1 cut(s) 2235
Acc36I ACCTGC 1 cut(s) 3432
AccB1I GGYRCC 2 cut(s) 3240, 5011
AccB7I CCANNNNNTGG 2 cut(s) 1126, 2628
AccBSI CCGCTC 2 cut(s) 57, 946
AccI GTMKAC 1 cut(s) 4648
AccII CGCG 1 cut(s) 2558
AccIII TCCGGA 2 cut(s) 1112, 1897
AclWI GGATC 6 cut(s) 349, 362, 1849, 2798, 3110, 4065
AcoI YGGCCR 2 cut(s) 3, 3545
AcuI CTGAAG 8 cut(s) 438, 923, 2811, 3105, 3386, 3829, 5072, 5262
AcvI CACGTG 1 cut(s) 2035
AcyI GRCGYC 1 cut(s) 5702
AfeI AGCGCT 2 cut(s) 1326, 4930
AflII CTTAAG 2 cut(s) 3556, 3874
AflIII ACRYGT 2 cut(s) 321, 639
AhlI ACTAGT 1 cut(s) 1451
AjiI CACGTC 1 cut(s) 4680
AjnI CCWGG 6 cut(s) 189, 764, 880, 1075, 1462, 4196
AleI CACNNNNGTG 2 cut(s) 575, 3208
Alw21I GWGCWC 5 cut(s) 3069, 3342, 3843, 4685, 5402
Alw26I GTCTC 6 cut(s) 13, 486, 854, 2623, 3896, 5630
Alw44I GTGCAC 1 cut(s) 5398
AlwI GGATC 6 cut(s) 349, 362, 1849, 2798, 3110, 4065
AlwNI CAGNNNCTG 2 cut(s) 71, 3929
Aor13HI TCCGGA 2 cut(s) 1112, 1897
Aor51HI AGCGCT 2 cut(s) 1326, 4930
AoxI GGCC 8 cut(s) 3, 77, 1558, 1869, 3545, 3870, 4363, 5145
ApaI GGGCCC 2 cut(s) 1562, 5149
ApaLI GTGCAC 1 cut(s) 5398
ApeKI GCWGC 8 cut(s) 291, 1056, 1238, 2687, 2885, 3038, 3318, 4859
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AseI ATTAAT 3 cut(s) 1946, 2079, 2474
Asp700I GAANNNNTTC 2 cut(s) 3272, 5446
AspA2I CCTAGG 1 cut(s) 5149
AspLEI GCGC 4 cut(s) 521, 1327, 2459, 4931
AsuHPI GGTGA 9 cut(s) 286, 308, 563, 932, 2111, 2150, 3002, 3528, 4856
AvaII GGWCC 5 cut(s) 59, 176, 2513, 2878, 4999
AvrII CCTAGG 1 cut(s) 5149
BaeGI GKGCMC 5 cut(s) 1562, 3245, 4153, 5149, 5402
BamHI GGATCC 1 cut(s) 354
BanI GGYRCC 2 cut(s) 3240, 5011
BanII GRGCYC 6 cut(s) 781, 1562, 3843, 5149, 5377, 5512
BarI GAAGNNNNNNTAC 2 cut(s) 4556, 4588
BauI CACGAG 1 cut(s) 3733
BbrPI CACGTG 1 cut(s) 2035
BbsI GAAGAC 4 cut(s) 1404, 4484, 4744, 5527
Bbv12I GWGCWC 5 cut(s) 3069, 3342, 3843, 4685, 5402
BbvCI CCTCAGC 1 cut(s) 3622
BbvI GCAGC 8 cut(s) 303, 1043, 1225, 2699, 2897, 3050, 3330, 4871
BceAI ACGGC 2 cut(s) 1129, 5297
BciT130I CCWGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
BclI TGATCA 1 cut(s) 1294
BcoDI GTCTC 6 cut(s) 13, 486, 854, 2623, 3896, 5630
BcuI ACTAGT 1 cut(s) 1451
BfmI CTRYAG 4 cut(s) 1957, 2727, 4665, 5352
BfoI RGCGCY 3 cut(s) 1328, 2460, 4932
BfrI CTTAAG 2 cut(s) 3556, 3874
BfuAI ACCTGC 1 cut(s) 3432
BglII AGATCT 2 cut(s) 3015, 4245
BlnI CCTAGG 1 cut(s) 5149
BlpI GCTNAGC 2 cut(s) 4131, 4684
BmcAI AGTACT 1 cut(s) 979
Bme1390I CCNGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
Bme18I GGWCC 5 cut(s) 59, 176, 2513, 2878, 4999
BmgBI CACGTC 1 cut(s) 4680
BmrFI CCNGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
BmrI ACTGGG 2 cut(s) 1876, 5519
BmuI ACTGGG 2 cut(s) 1876, 5519
BpiI GAAGAC 4 cut(s) 1404, 4484, 4744, 5527
BplI GAGNNNNNCTC 4 cut(s) 1640, 1672, 3056, 3088
BpmI CTGGAG 5 cut(s) 212, 845, 1844, 2647, 2688
Bpu10I CCTNAGC 1 cut(s) 3622
Bpu1102I GCTNAGC 2 cut(s) 4131, 4684
BpuEI CTTGAG 5 cut(s) 773, 1541, 2300, 3613, 4142
BsaAI YACGTR 2 cut(s) 432, 2035
BsaBI GATNNNNATC 4 cut(s) 1032, 2001, 4020, 4244
BsaHI GRCGYC 1 cut(s) 5702
BsaI GGTCTC 2 cut(s) 854, 5630
BsaJI CCNNGG 3 cut(s) 179, 673, 5149
BsaWI WCCGGW 2 cut(s) 1112, 1897
BsaXI ACNNNNNCTCC 4 cut(s) 4387, 4417, 5430, 5460
Bse1I ACTGG 8 cut(s) 358, 1871, 1972, 2440, 3414, 3912, 3953, 5525
Bse8I GATNNNNATC 4 cut(s) 1032, 2001, 4020, 4244
BseAI TCCGGA 2 cut(s) 1112, 1897
BseBI CCWGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
BseDI CCNNGG 3 cut(s) 179, 673, 5149
BseJI GATNNNNATC 4 cut(s) 1032, 2001, 4020, 4244
BseNI ACTGG 8 cut(s) 358, 1871, 1972, 2440, 3414, 3912, 3953, 5525
BseRI GAGGAG 3 cut(s) 491, 2740, 3914
BseSI GKGCMC 5 cut(s) 1562, 3245, 4153, 5149, 5402
BseXI GCAGC 8 cut(s) 303, 1043, 1225, 2699, 2897, 3050, 3330, 4871
BseYI CCCAGC 3 cut(s) 450, 3989, 5262
BsgI GTGCAG 5 cut(s) 2160, 2904, 3186, 4614, 5442
Bsh1236I CGCG 1 cut(s) 2558
BshFI GGCC 8 cut(s) 5, 79, 1560, 1871, 3547, 3872, 4365, 5147
BshNI GGYRCC 2 cut(s) 3240, 5011
BsiHKAI GWGCWC 5 cut(s) 3069, 3342, 3843, 4685, 5402
BsiSI CCGG 5 cut(s) 1053, 1113, 1898, 3513, 4655
BslFI GGGAC 4 cut(s) 1028, 1101, 1117, 3654
BsmAI GTCTC 6 cut(s) 13, 486, 854, 2623, 3896, 5630
BsmFI GGGAC 4 cut(s) 1028, 1101, 1117, 3654
BsmI GAATGC 4 cut(s) 1252, 2054, 2336, 3817
BsnI GGCC 8 cut(s) 5, 79, 1560, 1871, 3547, 3872, 4365, 5147
Bso31I GGTCTC 2 cut(s) 854, 5630
Bsp120I GGGCCC 2 cut(s) 1558, 5145
Bsp13I TCCGGA 2 cut(s) 1112, 1897
Bsp1407I TGTACA 2 cut(s) 567, 2818
Bsp1720I GCTNAGC 2 cut(s) 4131, 4684
Bsp19I CCATGG 1 cut(s) 179
BspANI GGCC 8 cut(s) 5, 79, 1560, 1871, 3547, 3872, 4365, 5147
BspEI TCCGGA 2 cut(s) 1112, 1897
BspFNI CGCG 1 cut(s) 2558
BspHI TCATGA 3 cut(s) 3057, 3666, 5197
BspMAI CTGCAG 3 cut(s) 2731, 4669, 5356
BspMI ACCTGC 1 cut(s) 3432
BspPI GGATC 6 cut(s) 349, 362, 1849, 2798, 3110, 4065
BspQI GCTCTTC 2 cut(s) 145, 3848
BspT107I GGYRCC 2 cut(s) 3240, 5011
BspTI CTTAAG 2 cut(s) 3556, 3874
BspTNI GGTCTC 2 cut(s) 854, 5630
BsrBI CCGCTC 2 cut(s) 57, 946
BsrGI TGTACA 2 cut(s) 567, 2818
BsrI ACTGG 8 cut(s) 358, 1871, 1972, 2440, 3414, 3912, 3953, 5525
BssECI CCNNGG 3 cut(s) 179, 673, 5149
BssNI GRCGYC 1 cut(s) 5702
BssSI CACGAG 1 cut(s) 3733
BssT1I CCWWGG 3 cut(s) 179, 673, 5149
Bst2BI CACGAG 1 cut(s) 3733
Bst2UI CCWGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
Bst6I CTCTTC 8 cut(s) 38, 145, 1349, 2841, 3025, 3263, 3848, 4897
BstACI GRCGYC 1 cut(s) 5702
BstAFI CTTAAG 2 cut(s) 3556, 3874
BstAPI GCANNNNNTGC 3 cut(s) 1247, 5189, 5475
BstAUI TGTACA 2 cut(s) 567, 2818
BstBAI YACGTR 2 cut(s) 432, 2035
BstDSI CCRYGG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 2558
BstH2I RGCGCY 3 cut(s) 1328, 2460, 4932
BstHHI GCGC 4 cut(s) 521, 1327, 2459, 4931
BstMAI GTCTC 6 cut(s) 13, 486, 854, 2623, 3896, 5630
BstMWI GCNNNNNNNGC 9 cut(s) 1062, 1247, 1331, 1516, 4895, 4915, 5189, 5360, 5475
BstNI CCWGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
BstNSI RCATGY 6 cut(s) 325, 643, 2921, 4644, 4837, 5729
BstSCI CCNGG 6 cut(s) 189, 764, 880, 1075, 1462, 4196
BstSFI CTRYAG 4 cut(s) 1957, 2727, 4665, 5352
BstSLI GKGCMC 5 cut(s) 1562, 3245, 4153, 5149, 5402
BstSNI TACGTA 1 cut(s) 432
BstUI CGCG 1 cut(s) 2558
BstV1I GCAGC 8 cut(s) 303, 1043, 1225, 2699, 2897, 3050, 3330, 4871
BstV2I GAAGAC 4 cut(s) 1404, 4484, 4744, 5527
BstX2I RGATCY 3 cut(s) 354, 3015, 4245
BstXI CCANNNNNNTGG 5 cut(s) 869, 956, 1348, 3960, 5712
BstYI RGATCY 3 cut(s) 354, 3015, 4245
BsuRI GGCC 8 cut(s) 5, 79, 1560, 1871, 3547, 3872, 4365, 5147
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 2109
BtrI CACGTC 1 cut(s) 4680
BtsI GCAGTG 4 cut(s) 321, 4680, 4779, 5550
BveI ACCTGC 1 cut(s) 3432
CaiI CAGNNNCTG 2 cut(s) 71, 3929
CciI TCATGA 3 cut(s) 3057, 3666, 5197
CfoI GCGC 4 cut(s) 521, 1327, 2459, 4931
CseI GACGC 1 cut(s) 5710
CspCI CAANNNNNGTGG 4 cut(s) 154, 189, 2139, 2174
DraI TTTAAA 2 cut(s) 4311, 4812
DrdI GACNNNNNNGTC 1 cut(s) 2235
DseDI GACNNNNNNGTC 1 cut(s) 2235
EaeI YGGCCR 2 cut(s) 3, 3545
Eam1104I CTCTTC 8 cut(s) 38, 145, 1349, 2841, 3025, 3263, 3848, 4897
EarI CTCTTC 8 cut(s) 38, 145, 1349, 2841, 3025, 3263, 3848, 4897
EciI GGCGGA 1 cut(s) 1026
Ecl136II GAGCTC 1 cut(s) 3841
Eco105I TACGTA 1 cut(s) 432
Eco130I CCWWGG 3 cut(s) 179, 673, 5149
Eco147I AGGCCT 1 cut(s) 3872
Eco24I GRGCYC 6 cut(s) 781, 1562, 3843, 5149, 5377, 5512
Eco31I GGTCTC 2 cut(s) 854, 5630
Eco47I GGWCC 5 cut(s) 59, 176, 2513, 2878, 4999
Eco47III AGCGCT 2 cut(s) 1326, 4930
Eco53kI GAGCTC 1 cut(s) 3841
Eco57I CTGAAG 8 cut(s) 438, 923, 2811, 3105, 3386, 3829, 5072, 5262
Eco72I CACGTG 1 cut(s) 2035
EcoICRI GAGCTC 1 cut(s) 3841
EcoO109I RGGNCCY 3 cut(s) 1559, 4363, 5146
EcoRI GAATTC 3 cut(s) 2183, 4174, 5282
EcoRII CCWGG 6 cut(s) 189, 764, 880, 1075, 1462, 4196
EcoT14I CCWWGG 3 cut(s) 179, 673, 5149
EcoT22I ATGCAT 6 cut(s) 1252, 1626, 2407, 2919, 3238, 5162
EcoT38I GRGCYC 6 cut(s) 781, 1562, 3843, 5149, 5377, 5512
ErhI CCWWGG 3 cut(s) 179, 673, 5149
FalI AAGNNNNNCTT 2 cut(s) 2358, 2390
FaqI GGGAC 4 cut(s) 1028, 1101, 1117, 3654
FauI CCCGC 4 cut(s) 70, 951, 1058, 1094
FauNDI CATATG 2 cut(s) 3981, 5417
FbaI TGATCA 1 cut(s) 1294
FblI GTMKAC 1 cut(s) 4648
FriOI GRGCYC 6 cut(s) 781, 1562, 3843, 5149, 5377, 5512
GlaI GCGC 4 cut(s) 520, 1326, 2458, 4930
GsaI CCCAGC 3 cut(s) 454, 3993, 5266
GsuI CTGGAG 5 cut(s) 212, 845, 1844, 2647, 2688
HaeII RGCGCY 3 cut(s) 1328, 2460, 4932
HaeIII GGCC 8 cut(s) 5, 79, 1560, 1871, 3547, 3872, 4365, 5147
HapII CCGG 5 cut(s) 1053, 1113, 1898, 3513, 4655
HgaI GACGC 1 cut(s) 5710
HhaI GCGC 4 cut(s) 521, 1327, 2459, 4931
Hin1I GRCGYC 1 cut(s) 5702
Hin6I GCGC 4 cut(s) 519, 1325, 2457, 4929
HinP1I GCGC 4 cut(s) 519, 1325, 2457, 4929
HincII GTYRAC 6 cut(s) 1964, 2256, 3139, 3181, 4649, 5571
HindII GTYRAC 6 cut(s) 1964, 2256, 3139, 3181, 4649, 5571
HindIII AAGCTT 2 cut(s) 818, 905
HpaI GTTAAC 3 cut(s) 2256, 3139, 3181
HpaII CCGG 5 cut(s) 1053, 1113, 1898, 3513, 4655
HphI GGTGA 9 cut(s) 286, 308, 563, 932, 2111, 2150, 3002, 3528, 4856
HpyCH4IV ACGT 6 cut(s) 328, 431, 1400, 2034, 3748, 4679
HpyF10VI GCNNNNNNNGC 9 cut(s) 1062, 1247, 1331, 1516, 4895, 4915, 5189, 5360, 5475
HpySE526I ACGT 6 cut(s) 328, 431, 1400, 2034, 3748, 4679
Hsp92I GRCGYC 1 cut(s) 5702
HspAI GCGC 4 cut(s) 519, 1325, 2457, 4929
Kpn2I TCCGGA 2 cut(s) 1112, 1897
Ksp22I TGATCA 1 cut(s) 1294
KspAI GTTAAC 3 cut(s) 2256, 3139, 3181
LguI GCTCTTC 2 cut(s) 145, 3848
LmnI GCTCC 8 cut(s) 516, 951, 1507, 1664, 2666, 3064, 4936, 5507
Lsp1109I GCAGC 8 cut(s) 303, 1043, 1225, 2699, 2897, 3050, 3330, 4871
MaeII ACGT 6 cut(s) 328, 431, 1400, 2034, 3748, 4679
MbiI CCGCTC 2 cut(s) 57, 946
MfeI CAATTG 3 cut(s) 563, 1121, 5454
MflI RGATCY 3 cut(s) 354, 3015, 4245
MlyI GAGTC 6 cut(s) 488, 1429, 2426, 2625, 3039, 4703
MmeI TCCRAC 7 cut(s) 127, 866, 1551, 2491, 3143, 3845, 5693
Mph1103I ATGCAT 6 cut(s) 1252, 1626, 2407, 2919, 3238, 5162
MroI TCCGGA 2 cut(s) 1112, 1897
MroXI GAANNNNTTC 2 cut(s) 3272, 5446
MslI CAYNNNNRTG 5 cut(s) 575, 954, 3208, 3397, 4634
MspA1I CMGCKG 4 cut(s) 294, 2888, 3041, 4997
MspCI CTTAAG 2 cut(s) 3556, 3874
MspI CCGG 5 cut(s) 1053, 1113, 1898, 3513, 4655
MspR9I CCNGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
MunI CAATTG 3 cut(s) 563, 1121, 5454
Mva1269I GAATGC 4 cut(s) 1252, 2054, 2336, 3817
MvaI CCWGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
MvnI CGCG 1 cut(s) 2558
MwoI GCNNNNNNNGC 9 cut(s) 1062, 1247, 1331, 1516, 4895, 4915, 5189, 5360, 5475
NcoI CCATGG 1 cut(s) 179
NdeI CATATG 2 cut(s) 3981, 5417
NmuCI GTSAC 7 cut(s) 324, 1476, 2428, 2990, 3754, 4675, 5545
NsiI ATGCAT 6 cut(s) 1252, 1626, 2407, 2919, 3238, 5162
NspI RCATGY 6 cut(s) 325, 643, 2921, 4644, 4837, 5729
OliI CACNNNNGTG 2 cut(s) 575, 3208
PaeI GCATGC 3 cut(s) 2921, 4837, 5729
PagI TCATGA 3 cut(s) 3057, 3666, 5197
PceI AGGCCT 1 cut(s) 3872
PciI ACATGT 2 cut(s) 321, 639
PciSI GCTCTTC 2 cut(s) 145, 3848
PctI GAATGC 4 cut(s) 1252, 2054, 2336, 3817
PdmI GAANNNNTTC 2 cut(s) 3272, 5446
PflFI GACNNNGTC 1 cut(s) 1012
PflMI CCANNNNNTGG 2 cut(s) 1126, 2628
PfoI TCCNGGA 1 cut(s) 1462
PleI GAGTC 6 cut(s) 487, 1428, 2425, 2624, 3039, 4703
PmaCI CACGTG 1 cut(s) 2035
PmlI CACGTG 1 cut(s) 2035
PpsI GAGTC 6 cut(s) 487, 1428, 2425, 2624, 3039, 4703
Ppu21I YACGTR 2 cut(s) 432, 2035
PscI ACATGT 2 cut(s) 321, 639
PshBI ATTAAT 3 cut(s) 1946, 2079, 2474
PsiI TTATAA 1 cut(s) 1695
Psp124BI GAGCTC 1 cut(s) 3843
Psp6I CCWGG 6 cut(s) 189, 764, 880, 1075, 1462, 4196
PspCI CACGTG 1 cut(s) 2035
PspFI CCCAGC 3 cut(s) 450, 3989, 5262
PspGI CCWGG 6 cut(s) 189, 764, 880, 1075, 1462, 4196
PspOMI GGGCCC 2 cut(s) 1558, 5145
PsrI GAACNNNNNNTAC 2 cut(s) 648, 680
PstI CTGCAG 3 cut(s) 2731, 4669, 5356
PstNI CAGNNNCTG 2 cut(s) 71, 3929
PsuI RGATCY 3 cut(s) 354, 3015, 4245
PsyI GACNNNGTC 1 cut(s) 1012
PvuII CAGCTG 2 cut(s) 2888, 3041
RseI CAYNNNNRTG 5 cut(s) 575, 954, 3208, 3397, 4634
SacI GAGCTC 1 cut(s) 3843
SalI GTCGAC 1 cut(s) 4647
SapI GCTCTTC 2 cut(s) 145, 3848
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 6 cut(s) 488, 1429, 2426, 2625, 3039, 4703
ScrFI CCNGG 6 cut(s) 191, 766, 882, 1077, 1464, 4198
SfcI CTRYAG 4 cut(s) 1957, 2727, 4665, 5352
SinI GGWCC 5 cut(s) 59, 176, 2513, 2878, 4999
SmiMI CAYNNNNRTG 5 cut(s) 575, 954, 3208, 3397, 4634
SmlI CTYRAG 7 cut(s) 752, 1520, 2279, 3556, 3628, 3874, 4121
SmoI CTYRAG 7 cut(s) 752, 1520, 2279, 3556, 3628, 3874, 4121
SnaBI TACGTA 1 cut(s) 432
SpeI ACTAGT 1 cut(s) 1451
SphI GCATGC 3 cut(s) 2921, 4837, 5729
SseBI AGGCCT 1 cut(s) 3872
SspI AATATT 4 cut(s) 1699, 2975, 3229, 5270
SstI GAGCTC 1 cut(s) 3843
StuI AGGCCT 1 cut(s) 3872
StyD4I CCNGG 6 cut(s) 189, 764, 880, 1075, 1462, 4196
StyI CCWWGG 3 cut(s) 179, 673, 5149
TaiI ACGT 6 cut(s) 331, 434, 1403, 2037, 3751, 4682
TaqI TCGA 9 cut(s) 269, 2650, 3774, 3916, 4383, 4424, 4648, 5367, 5595
TatI WGTACW 8 cut(s) 567, 977, 1495, 1606, 1982, 2818, 3931, 5555
TauI GCSGC 2 cut(s) 3795, 5636
TseFI GTSAC 7 cut(s) 324, 1476, 2428, 2990, 3754, 4675, 5545
TseI GCWGC 8 cut(s) 291, 1056, 1238, 2687, 2885, 3038, 3318, 4859
Tsp45I GTSAC 7 cut(s) 324, 1476, 2428, 2990, 3754, 4675, 5545
TspGWI ACGGA 1 cut(s) 529
Tth111I GACNNNGTC 1 cut(s) 1012
Van91I CCANNNNNTGG 2 cut(s) 1126, 2628
Vha464I CTTAAG 2 cut(s) 3556, 3874
VneI GTGCAC 1 cut(s) 5398
VpaK11BI GGWCC 5 cut(s) 59, 176, 2513, 2878, 4999
VspI ATTAAT 3 cut(s) 1946, 2079, 2474
XbaI TCTAGA 1 cut(s) 2585
XceI RCATGY 6 cut(s) 325, 643, 2921, 4644, 4837, 5729
XcmI CCANNNNNNNNNTGG 1 cut(s) 3204
XmaJI CCTAGG 1 cut(s) 5149
XmiI GTMKAC 1 cut(s) 4648
XmnI GAANNNNTTC 2 cut(s) 3272, 5446
ZrmI AGTACT 1 cut(s) 979
Zsp2I ATGCAT 6 cut(s) 1252, 1626, 2407, 2919, 3238, 5162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.