Rh6CG024100

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2219205 .. 2220221
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG024100.1

Sequence Viewer

Length: 753 bp
ATGCTAAAAGGTGATTTCCCCAACGCAGCATTTTTACTCAGGCAGTTGTTAATCGCCTCTTCTGCTATTTTGAGGCTAAATTTGCATATTAATAGCGCTCCCATGTTGTCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCTTGTTATTGGAATCAGTTTCAGCGGACGCAAGTCAGGTGCCACACTTCTATTATTTTGTGTGTTTAGATAGTGTTCTGACGTATCTGGAAGAATTAGGGAATCATTTTCCTTTGACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTAGGATGCATAACTTTACAAGGGAAAAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCATAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTCGCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCGGGAAGGGTGCACAGTGAGGTATGACATATGTGCTGGATGTGAAAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGGTAATATTATATCACACATTTATAGAGCGTATGAAATGGTTCTACTACATTAATTCCCTATTTAGCTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

250

Amino Acids

28.7

Weight (kDa)

7.7

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 2 cut(s) 170, 559
AcsI RAATTY 3 cut(s) 79, 452, 667
AcuI CTGAAG 1 cut(s) 432
AfeI AGCGCT 1 cut(s) 97
AgsI TTSAA 3 cut(s) 457, 530, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 5 cut(s) 114, 307, 461, 533, 744
AluI AGCT 5 cut(s) 114, 307, 461, 533, 744
Alw21I GWGCWC 1 cut(s) 572
Alw44I GTGCAC 1 cut(s) 568
Aor51HI AGCGCT 1 cut(s) 97
ApaLI GTGCAC 1 cut(s) 568
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 79, 452, 667
AseI ATTAAT 2 cut(s) 90, 729
Asp700I GAANNNNTTC 2 cut(s) 618, 716
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 572
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 322, 547
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 292, 601
BfaI CTAG 3 cut(s) 323, 462, 548
BfmI CTRYAG 2 cut(s) 308, 522
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 5 cut(s) 317, 371, 425, 520, 643
BoxI GACNNNNGTC 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
BseGI GGATG 3 cut(s) 332, 454, 602
BseMII CTCAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 322, 547, 572
BspACI CCGC 2 cut(s) 170, 559
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 312, 574
Bst6I CTCTTC 1 cut(s) 64
BstAPI GCANNNNNTGC 2 cut(s) 359, 647
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 332, 454, 602
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstMWI GCNNNNNNNGC 5 cut(s) 62, 82, 359, 530, 647
BstPAI GACNNNNGTC 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 308, 522
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 1 cut(s) 38
BtsCI GGATG 3 cut(s) 332, 454, 602
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 489, 579
Cac8I GCNNGC 1 cut(s) 133
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 98
CseI GACGC 1 cut(s) 182
CviAII CATG 2 cut(s) 103, 368
CviJI RGCY 9 cut(s) 76, 114, 307, 320, 432, 461, 533, 545, 744
CviKI_1 RGCY 9 cut(s) 76, 114, 307, 320, 432, 461, 533, 545, 744
DdeI CTNAG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 322, 547
Eco47III AGCGCT 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 432
EcoRI GAATTC 1 cut(s) 452
EcoT22I ATGCAT 2 cut(s) 332, 751
EcoT38I GRGCYC 2 cut(s) 322, 547
FaeI CATG 2 cut(s) 106, 371
FatI CATG 2 cut(s) 102, 367
FauI CCCGC 1 cut(s) 552
FauNDI CATATG 1 cut(s) 587
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 3 cut(s) 339, 461, 609
FriOI GRGCYC 2 cut(s) 322, 547
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 323, 462, 548
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 436
HaeII RGCGCY 1 cut(s) 99
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 106, 371
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 2 cut(s) 158, 247
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 570
Hpy188I TCNGA 2 cut(s) 225, 412
Hpy188III TCNNGA 4 cut(s) 233, 279, 368, 664
Hpy8I GTNNAC 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 2 cut(s) 312, 574
HpyCH4IV ACGT 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 82, 359, 530, 647
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 106, 371
HspAI GCGC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 5 cut(s) 317, 371, 425, 520, 643
MaeI CTAG 3 cut(s) 323, 462, 548
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 3 cut(s) 51, 248, 614
MfeI CAATTG 1 cut(s) 626
MhlI GDGCHC 3 cut(s) 322, 547, 572
MluCI AATT 6 cut(s) 79, 239, 452, 626, 667, 730
MnlI CCTC 5 cut(s) 66, 67, 462, 570, 604
Mph1103I ATGCAT 2 cut(s) 332, 751
MroXI GAANNNNTTC 2 cut(s) 618, 716
MseI TTAA 3 cut(s) 50, 90, 729
MspA1I CMGCKG 1 cut(s) 170
MunI CAATTG 1 cut(s) 626
MwoI GCNNNNNNNGC 5 cut(s) 62, 82, 359, 530, 647
NdeI CATATG 1 cut(s) 587
NlaIII CATG 2 cut(s) 106, 371
NlaIV GGNNCC 1 cut(s) 186
NsiI ATGCAT 2 cut(s) 332, 751
PagI TCATGA 1 cut(s) 367
PdmI GAANNNNTTC 2 cut(s) 618, 716
PfeI GAWTC 2 cut(s) 158, 247
PkrI GCNGC 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 177
PshBI ATTAAT 2 cut(s) 90, 729
PspFI CCCAGC 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 526
SaqAI TTAA 3 cut(s) 50, 90, 729
SatI GCNGC 1 cut(s) 27
SduI GDGCHC 3 cut(s) 322, 547, 572
SfaNI GCATC 5 cut(s) 317, 371, 425, 520, 643
SfcI CTRYAG 2 cut(s) 308, 522
Sse9I AATT 6 cut(s) 79, 239, 452, 626, 667, 730
SsiI CCGC 2 cut(s) 170, 559
SspI AATATT 2 cut(s) 440, 684
SspMI CTAG 3 cut(s) 323, 462, 548
TaaI ACNGT 2 cut(s) 312, 574
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 537
TasI AATT 6 cut(s) 79, 239, 452, 626, 667, 730
TfiI GAWTC 2 cut(s) 158, 247
Tru1I TTAA 3 cut(s) 50, 90, 729
Tru9I TTAA 3 cut(s) 50, 90, 729
TscAI CASTG 2 cut(s) 489, 579
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 384, 465, 478, 725
TspRI CASTG 2 cut(s) 489, 579
VneI GTGCAC 1 cut(s) 568
VspI ATTAAT 2 cut(s) 90, 729
XapI RAATTY 3 cut(s) 79, 452, 667
XmnI GAANNNNTTC 2 cut(s) 618, 716
XspI CTAG 3 cut(s) 323, 462, 548
Zsp2I ATGCAT 2 cut(s) 332, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.