Rh6DG020900

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Forward (+)
1844934 .. 1846960
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG020900.1

Sequence Viewer

Length: 912 bp
ATGCCTCAGATCTCATCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAAAGTAAGCGTCTTTCAAAGATCAAATGGTGCTTCCCATGACCCTCACGTGATGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGCGACTTTCCATCCGGCAATGTTAAATTCAAATCATCACCTAATTGGCCGAATGTTTTAAGTGATTTAGAGAACATACCATTGCTTATTTCCTGCAGCAAACTCAATGTATTTGACTGTTCCTCAGCCTCAAGTTGCAAGGGACATAACTCCCAACCATCTACCATCATGAAATTTACAGCTTGTCAGAGTTTGCTTAATCTTTTGAGGTGTATGCTAAAAGGTCATTTGGACTTGAGATCATTTTCATGTTATGTGTCATCTATTCTCAACCTCAAAAGGATTGTTGTTGGCGGCTCATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTTTTCAGATTTCAAACCTCAGACACTCGAGTACTCTTTGAGGATTTATTTCCTGTTTCATGGCTTTACAAGTCAGTGCGTATGGTTGCTGCTTCAAGAGTCATTCTCAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAGTATAATCATGCTGTTCGTTTCCTTGAGATTGCTGAGCTGAACTCTGGATCTGCTCAAGAACAGAGAAGTTTATTGAATTCGTCCGATTATATTGAAGCCTGGAAAAGTAAGTCAGGCTACAATTCAGATTTGTTGGCTGCAGAGAAGATTGTGCCGGAAAACAATGATGCTGACACTAATATGTCATGTGGTGGACTGCAGGATGAATCGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

303

Amino Acids

34.43

Weight (kDa)

6.7

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 453
AclWI GGATC 2 cut(s) 663, 751
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 3 cut(s) 185, 332, 772
AcvI CACGTG 1 cut(s) 100
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 6 cut(s) 68, 190, 515, 597, 772, 791
AjnI CCWGG 1 cut(s) 794
AluBI AGCT 3 cut(s) 341, 502, 733
AluI AGCT 3 cut(s) 341, 502, 733
AlwI GGATC 2 cut(s) 663, 751
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 255, 590, 833
ApoI RAATTY 3 cut(s) 185, 332, 772
AsuHPI GGTGA 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 528
BbrPI CACGTG 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 283
BbvI GCAGC 3 cut(s) 267, 577, 820
BccI CCATC 3 cut(s) 178, 325, 332
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 796
BfmI CTRYAG 3 cut(s) 253, 834, 893
BglII AGATCT 1 cut(s) 9
BisI GCNGC 4 cut(s) 256, 454, 591, 834
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 4 cut(s) 257, 455, 592, 835
BmcAI AGTACT 1 cut(s) 534
Bme1390I CCNGG 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 796
BmsI GCATC 1 cut(s) 853
BplI GAGNNNNNCTC 4 cut(s) 591, 623, 722, 754
Bpu10I CCTNAGC 1 cut(s) 283
Bpu1102I GCTNAGC 1 cut(s) 729
BpuEI CTTGAG 4 cut(s) 274, 415, 735, 740
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 618
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 2 cut(s) 184, 239
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 1 cut(s) 796
BseGI GGATG 2 cut(s) 170, 904
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 2 cut(s) 184, 239
BseMII CTCAG 4 cut(s) 20, 297, 534, 720
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 267, 577, 820
BshFI GGCC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 2 cut(s) 174, 851
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 528
Bsp143I GATC 6 cut(s) 9, 71, 398, 639, 655, 743
Bsp1720I GCTNAGC 1 cut(s) 729
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 4 cut(s) 19, 296, 533, 721
BspHI TCATGA 2 cut(s) 327, 631
BspMAI CTGCAG 3 cut(s) 257, 838, 897
BspPI GGATC 2 cut(s) 663, 751
BsrDI GCAATG 2 cut(s) 184, 239
BsrI ACTGG 1 cut(s) 36
BssMI GATC 6 cut(s) 9, 71, 398, 639, 655, 743
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 2 cut(s) 21, 278
BstBAI YACGTR 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 6, 283, 520, 729
BstF5I GGATG 2 cut(s) 170, 904
BstKTI GATC 6 cut(s) 12, 74, 401, 642, 658, 746
BstMBI GATC 6 cut(s) 9, 71, 398, 639, 655, 743
BstNI CCWGG 1 cut(s) 796
BstSCI CCNGG 1 cut(s) 794
BstSFI CTRYAG 3 cut(s) 253, 834, 893
BstV1I GCAGC 3 cut(s) 267, 577, 820
BstX2I RGATCY 2 cut(s) 9, 743
BstYI RGATCY 2 cut(s) 9, 743
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 170, 904
BtsIMutI CAGTG 2 cut(s) 26, 582
CciI TCATGA 2 cut(s) 327, 631
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 533
CviAII CATG 7 cut(s) 89, 328, 408, 561, 632, 704, 882
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 4 cut(s) 6, 283, 520, 729
DpnI GATC 6 cut(s) 11, 73, 400, 641, 657, 745
DpnII GATC 6 cut(s) 9, 71, 398, 639, 655, 743
EaeI YGGCCR 1 cut(s) 206
Eco72I CACGTG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 794
FaeI CATG 7 cut(s) 92, 331, 411, 564, 635, 707, 885
FaqI GGGAC 1 cut(s) 315
FatI CATG 7 cut(s) 88, 327, 407, 560, 631, 703, 881
Fnu4HI GCNGC 4 cut(s) 256, 454, 591, 834
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 4 cut(s) 256, 454, 591, 834
GluI GCNGC 4 cut(s) 256, 454, 591, 834
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 174, 851
HgaI GACGC 1 cut(s) 49
Hin1II CATG 7 cut(s) 92, 331, 411, 564, 635, 707, 885
HinfI GANTC 3 cut(s) 32, 600, 902
HpaII CCGG 2 cut(s) 174, 851
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 890
Hpy188I TCNGA 8 cut(s) 9, 348, 471, 509, 523, 678, 781, 823
Hpy188III TCNNGA 5 cut(s) 328, 597, 632, 741, 752
Hpy8I GTNNAC 1 cut(s) 890
HpyCH4III ACNGT 2 cut(s) 21, 278
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 6 cut(s) 113, 131, 255, 297, 836, 895
HpyF3I CTNAG 4 cut(s) 6, 283, 520, 729
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 7 cut(s) 92, 331, 411, 564, 635, 707, 885
Kzo9I GATC 6 cut(s) 9, 71, 398, 639, 655, 743
Lsp1109I GCAGC 3 cut(s) 267, 577, 820
LweI GCATC 1 cut(s) 853
MaeII ACGT 1 cut(s) 99
MalI GATC 6 cut(s) 11, 73, 400, 641, 657, 745
MboI GATC 6 cut(s) 9, 71, 398, 639, 655, 743
MboII GAAGA 1 cut(s) 853
MflI RGATCY 2 cut(s) 9, 743
MluCI AATT 5 cut(s) 185, 202, 332, 772, 817
MlyI GAGTC 1 cut(s) 609
MnlI CCTC 9 cut(s) 15, 105, 111, 292, 298, 360, 443, 529, 535
MseI TTAA 5 cut(s) 183, 218, 357, 650, 683
MslI CAYNNNNRTG 3 cut(s) 19, 406, 875
MspI CCGG 2 cut(s) 174, 851
MspR9I CCNGG 1 cut(s) 796
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 796
NdeII GATC 6 cut(s) 9, 71, 398, 639, 655, 743
NlaIII CATG 7 cut(s) 92, 331, 411, 564, 635, 707, 885
PaeR7I CTCGAG 1 cut(s) 528
PagI TCATGA 2 cut(s) 327, 631
PctI GAATGC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 32, 902
PkrI GCNGC 4 cut(s) 257, 455, 592, 835
PleI GAGTC 1 cut(s) 608
PmaCI CACGTG 1 cut(s) 100
PmlI CACGTG 1 cut(s) 100
PpsI GAGTC 1 cut(s) 608
Ppu21I YACGTR 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 794
PspCI CACGTG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 794
PspXI VCTCGAGB 1 cut(s) 528
PstI CTGCAG 3 cut(s) 257, 838, 897
PsuI RGATCY 2 cut(s) 9, 743
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 3 cut(s) 19, 406, 875
SaqAI TTAA 5 cut(s) 183, 218, 357, 650, 683
SatI GCNGC 4 cut(s) 256, 454, 591, 834
Sau3AI GATC 6 cut(s) 9, 71, 398, 639, 655, 743
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 1 cut(s) 796
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 3 cut(s) 253, 834, 893
Sfr274I CTCGAG 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 528
SmiMI CAYNNNNRTG 3 cut(s) 19, 406, 875
SmlI CTYRAG 5 cut(s) 289, 394, 528, 719, 750
SmoI CTYRAG 5 cut(s) 289, 394, 528, 719, 750
Sse9I AATT 5 cut(s) 185, 202, 332, 772, 817
SsiI CCGC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 794
TaaI ACNGT 2 cut(s) 21, 278
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 529
TasI AATT 5 cut(s) 185, 202, 332, 772, 817
TatI WGTACW 1 cut(s) 532
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 2 cut(s) 32, 902
Tru1I TTAA 5 cut(s) 183, 218, 357, 650, 683
Tru9I TTAA 5 cut(s) 183, 218, 357, 650, 683
TscAI CASTG 2 cut(s) 26, 582
TseI GCWGC 3 cut(s) 255, 590, 833
TspDTI ATGAA 6 cut(s) 145, 344, 396, 468, 549, 620
TspRI CASTG 2 cut(s) 26, 582
XapI RAATTY 3 cut(s) 185, 332, 772
XhoI CTCGAG 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.