Rh6CG025400

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2298458 .. 2298991
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG025400.1

Sequence Viewer

Length: 534 bp
ATGGGAGATTCGTTCTCCTCATTCTCTGGCAGGGATTGGATGGAAATGTCTAATTGGATCAATGGGGGATTTTTCTCTTGGATTGTCCAACCTTCAGCTTCTCTTCTTGCTGTTATTCGATCTGTTTCAAACATCTTTTGTAAGGACCATGCAGCTGATTCTTGTCCTTTAACTTATGTAATGCATGCTATGGCTTGTGAAAGGCTTGTGGATTTGTATAGTCGTATAAAGTCTTTTGAATATTTGATTGAAAATGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAAGAGGCAGCAGGACTCACGGGATTTATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACAACTAACAATAAGATGGTTAACTATGAAAGTTATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCGTGCCTCTAAAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

177

Amino Acids

20.17

Weight (kDa)

5.3

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 78, 372
AfiI CCNNNNNNNGG 1 cut(s) 525
AgsI TTSAA 3 cut(s) 129, 239, 251
AleI CACNNNNGTG 1 cut(s) 475
AluBI AGCT 2 cut(s) 98, 155
AluI AGCT 2 cut(s) 98, 155
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 152, 305
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 507
BauI CACGAG 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 164, 317
BccI CCATC 3 cut(s) 34, 322, 394
BglII AGATCT 1 cut(s) 282
BisI GCNGC 2 cut(s) 153, 306
BlsI GCNGC 2 cut(s) 154, 307
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 458
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 525
BseMI GCAATG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 2 cut(s) 164, 317
BsgI GTGCAG 1 cut(s) 453
BshNI GGYRCC 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 336, 512
Bsp143I GATC 4 cut(s) 57, 119, 282, 355
BspACI CCGC 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 458
BssMI GATC 4 cut(s) 57, 119, 282, 355
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst6I CTCTTC 2 cut(s) 108, 292
BstC8I GCNNGC 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 523
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 4 cut(s) 60, 122, 285, 358
BstMBI GATC 4 cut(s) 57, 119, 282, 355
BstNSI RCATGY 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 164, 317
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 4 cut(s) 149, 185, 500, 504
CviJI RGCY 4 cut(s) 98, 155, 194, 205
CviKI_1 RGCY 4 cut(s) 98, 155, 194, 205
DpnI GATC 4 cut(s) 59, 121, 284, 357
DpnII GATC 4 cut(s) 57, 119, 282, 355
Eam1104I CTCTTC 2 cut(s) 108, 292
EarI CTCTTC 2 cut(s) 108, 292
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 78, 372
EcoNI CCTNNNNNAGG 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 186, 505
FaeI CATG 4 cut(s) 152, 188, 503, 507
FatI CATG 4 cut(s) 148, 184, 499, 503
Fnu4HI GCNGC 2 cut(s) 153, 306
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 2 cut(s) 153, 306
GluI GCNGC 2 cut(s) 153, 306
Hin1II CATG 4 cut(s) 152, 188, 503, 507
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 3 cut(s) 8, 158, 312
HpaI GTTAAC 1 cut(s) 406
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 406, 448
Hpy188I TCNGA 1 cut(s) 352
Hpy8I GTNNAC 2 cut(s) 406, 448
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 152, 184, 271, 470, 503
Hsp92II CATG 4 cut(s) 152, 188, 503, 507
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 4 cut(s) 57, 119, 282, 355
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 12, 16, 251, 294
Lsp1109I GCAGC 2 cut(s) 164, 317
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 59, 121, 284, 357
MboI GATC 4 cut(s) 57, 119, 282, 355
MboII GAAGA 3 cut(s) 95, 279, 365
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 336, 512
MluCI AATT 1 cut(s) 52
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 6 cut(s) 28, 288, 295, 347, 522, 529
Mph1103I ATGCAT 2 cut(s) 186, 505
MseI TTAA 2 cut(s) 170, 405
MslI CAYNNNNRTG 1 cut(s) 475
MspA1I CMGCKG 1 cut(s) 155
NdeII GATC 4 cut(s) 57, 119, 282, 355
NlaIII CATG 4 cut(s) 152, 188, 503, 507
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 2 cut(s) 186, 505
NspI RCATGY 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 475
PaeI GCATGC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 8, 158
PkrI GCNGC 2 cut(s) 154, 307
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 475
SaqAI TTAA 2 cut(s) 170, 405
SatI GCNGC 2 cut(s) 153, 306
Sau3AI GATC 4 cut(s) 57, 119, 282, 355
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 306
SduI GDGCHC 2 cut(s) 336, 512
SetI ASST 4 cut(s) 94, 100, 157, 339
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 475
SphI GCATGC 1 cut(s) 188
Sse9I AATT 1 cut(s) 52
SsiI CCGC 1 cut(s) 278
SspI AATATT 3 cut(s) 242, 369, 496
TaqI TCGA 1 cut(s) 118
TasI AATT 1 cut(s) 52
TfiI GAWTC 2 cut(s) 8, 158
Tru1I TTAA 2 cut(s) 170, 405
Tru9I TTAA 2 cut(s) 170, 405
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 152, 305
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 4 cut(s) 361, 426, 435, 488
VpaK11BI GGWCC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 523
XceI RCATGY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 471
Zsp2I ATGCAT 2 cut(s) 186, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.