Rh6DG024900

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Reverse (-)
2219560 .. 2220393
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG024900.1

Sequence Viewer

Length: 834 bp
ATGAGGGATCAAAAGGTGGAACTAGCTTATGGTTTTGTGATGTCGAGAGGGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAATCAGTGAACATGTCACGTTTAGTAATTTTTGTCAGTGATTGGATCCAGTCATTGTTGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCAGAAGTTATTTATACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTCTGAAATTAAATGTTTCTTTAACTTTCTCACGGAACCTTTTACGCTCTATATGTTGGATTGCAAGAAGTGCACTGTCCTCATTGAACAAAACATTTATTGGTGAAGGGTTACAATTGTACACTACTATGCTTGATTGTATTTCTTTGGTATTTTCATCCCAAGAAGGCTTCTCAAATGAAAATTTAGACATGTGGATTTCAACTGTAAGTTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCTCTTGTTACTGGCAATGAGGGTGTATTTGTTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAGGGCTCATGCTCGGAAAGATGGATTTCATGATTTTAGTAATAAGCTCCTTGAACCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACAAGAAACTTACTGAAGCTTGTTGAAGATGTATTATCTCATGGGCTATATCACCATGCAGTACTGAAAAAGACGCCACATCCAATGATGGGAAGTCAAAAGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

277

Amino Acids

31.46

Weight (kDa)

6.41

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 804
AclWI GGATC 3 cut(s) 15, 124, 137
AcsI RAATTY 3 cut(s) 239, 439, 491
AcuI CTGAAG 1 cut(s) 731
AcyI GRCGYC 1 cut(s) 770
AfaI GTAC 2 cut(s) 377, 759
AfiI CCNNNNNNNGG 1 cut(s) 785
AflIII ACRYGT 2 cut(s) 96, 447
AgsI TTSAA 5 cut(s) 238, 343, 459, 635, 722
AjnI CCWGG 2 cut(s) 572, 688
AluBI AGCT 4 cut(s) 26, 506, 628, 715
AluI AGCT 4 cut(s) 26, 506, 628, 715
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 261, 662
Alw44I GTGCAC 1 cut(s) 327
AlwI GGATC 3 cut(s) 15, 124, 137
Aor13HI TCCGGA 1 cut(s) 804
ApaLI GTGCAC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 3 cut(s) 239, 439, 491
AsuHPI GGTGA 2 cut(s) 371, 740
BaeGI GKGCMC 1 cut(s) 331
BamHI GGATCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 596, 778
BciT130I CCWGG 2 cut(s) 574, 690
BcoDI GTCTC 2 cut(s) 261, 662
BfaI CTAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmcAI AGTACT 1 cut(s) 759
Bme1390I CCNGG 2 cut(s) 574, 690
BmiI GGNNCC 2 cut(s) 131, 293
BmrFI CCNGG 2 cut(s) 574, 690
BmsI GCATC 5 cut(s) 193, 212, 655, 673, 802
BpmI CTGGAG 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 581
BsaAI YACGTR 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 1 cut(s) 785
Bse1I ACTGG 2 cut(s) 133, 520
Bse3DI GCAATG 1 cut(s) 526
BseAI TCCGGA 1 cut(s) 804
BseBI CCWGG 2 cut(s) 574, 690
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 413, 775
BseLI CCNNNNNNNGG 1 cut(s) 785
BseMI GCAATG 1 cut(s) 526
BseNI ACTGG 2 cut(s) 133, 520
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 805
BslI CCNNNNNNNGG 1 cut(s) 785
BsmAI GTCTC 2 cut(s) 261, 662
Bso31I GGTCTC 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 331, 589
Bsp13I TCCGGA 1 cut(s) 804
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 7, 129
BspEI TCCGGA 1 cut(s) 804
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 131, 293
BspPI GGATC 3 cut(s) 15, 124, 137
BspTNI GGTCTC 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 2 cut(s) 133, 520
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 7, 129
BssNI GRCGYC 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 574, 690
Bst4CI ACNGT 3 cut(s) 333, 463, 500
BstACI GRCGYC 1 cut(s) 770
BstAPI GCANNNNNTGC 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 207
BstF5I GGATG 2 cut(s) 413, 775
BstKTI GATC 2 cut(s) 10, 132
BstMAI GTCTC 2 cut(s) 261, 662
BstMBI GATC 2 cut(s) 7, 129
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 2 cut(s) 574, 690
BstNSI RCATGY 2 cut(s) 100, 451
BstSCI CCNGG 2 cut(s) 572, 688
BstSLI GKGCMC 1 cut(s) 331
BstSNI TACGTA 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 677
BstYI RGATCY 1 cut(s) 129
BtsCI GGATG 2 cut(s) 413, 775
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 5 cut(s) 76, 96, 127, 329, 505
CciI TCATGA 1 cut(s) 610
CseI GACGC 1 cut(s) 778
Csp6I GTAC 2 cut(s) 376, 758
CviAII CATG 6 cut(s) 97, 448, 590, 611, 737, 752
CviJI RGCY 8 cut(s) 26, 426, 506, 565, 587, 628, 715, 742
CviKI_1 RGCY 8 cut(s) 26, 426, 506, 565, 587, 628, 715, 742
CviQI GTAC 2 cut(s) 376, 758
DpnI GATC 2 cut(s) 9, 131
DpnII GATC 2 cut(s) 7, 129
Eco105I TACGTA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 572, 688
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 6 cut(s) 100, 451, 593, 614, 740, 755
FatI CATG 6 cut(s) 96, 447, 589, 610, 736, 751
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 2 cut(s) 400, 762
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 23
GluI GCNGC 1 cut(s) 67
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 653
HapII CCGG 1 cut(s) 805
HgaI GACGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 6 cut(s) 100, 451, 593, 614, 740, 755
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 2 cut(s) 254, 799
HpaII CCGG 1 cut(s) 805
HphI GGTGA 2 cut(s) 371, 740
Hpy166II GTNNAC 3 cut(s) 94, 329, 378
Hpy188I TCNGA 3 cut(s) 151, 261, 597
Hpy188III TCNNGA 5 cut(s) 45, 476, 611, 670, 805
Hpy8I GTNNAC 3 cut(s) 94, 329, 378
HpyAV CCTTC 5 cut(s) 46, 53, 146, 356, 416
HpyCH4III ACNGT 3 cut(s) 333, 463, 500
HpyCH4IV ACGT 2 cut(s) 103, 206
HpyCH4V TGCA 5 cut(s) 320, 329, 646, 664, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 103, 206
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 6 cut(s) 100, 451, 593, 614, 740, 755
Kpn2I TCCGGA 1 cut(s) 804
Kzo9I GATC 2 cut(s) 7, 129
LmnI GCTCC 1 cut(s) 633
LpnPI CCDG 9 cut(s) 146, 211, 501, 559, 586, 675, 683, 702, 818
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 5 cut(s) 193, 212, 655, 673, 802
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 103, 206
MaeIII GTNAC 3 cut(s) 99, 366, 511
MalI GATC 2 cut(s) 9, 131
MboI GATC 2 cut(s) 7, 129
MboII GAAGA 2 cut(s) 68, 734
MfeI CAATTG 1 cut(s) 371
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 331, 589
MluCI AATT 7 cut(s) 111, 239, 263, 371, 439, 491, 542
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 293, 674
MnlI CCTC 7 cut(s) 41, 56, 70, 244, 346, 517, 648
MroI TCCGGA 1 cut(s) 804
MseI TTAA 4 cut(s) 218, 266, 278, 581
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 1 cut(s) 805
MspR9I CCNGG 2 cut(s) 574, 690
MunI CAATTG 1 cut(s) 371
MvaI CCWGG 2 cut(s) 574, 690
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 2 cut(s) 7, 129
NlaIII CATG 6 cut(s) 100, 451, 593, 614, 740, 755
NlaIV GGNNCC 2 cut(s) 131, 293
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 2 cut(s) 100, 451
PagI TCATGA 1 cut(s) 610
PciI ACATGT 2 cut(s) 96, 447
PfeI GAWTC 1 cut(s) 799
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 207
PscI ACATGT 2 cut(s) 96, 447
Psp6I CCWGG 2 cut(s) 572, 688
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 2 cut(s) 572, 688
PspN4I GGNNCC 2 cut(s) 131, 293
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 2 cut(s) 377, 759
RsaNI GTAC 2 cut(s) 376, 758
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 4 cut(s) 218, 266, 278, 581
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 7, 129
ScaI AGTACT 1 cut(s) 759
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 574, 690
SduI GDGCHC 2 cut(s) 331, 589
SfaNI GCATC 5 cut(s) 193, 212, 655, 673, 802
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
SnaBI TACGTA 1 cut(s) 207
Sse9I AATT 7 cut(s) 111, 239, 263, 371, 439, 491, 542
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 572, 688
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 3 cut(s) 333, 463, 500
TaiI ACGT 2 cut(s) 106, 209
TaqI TCGA 1 cut(s) 44
TasI AATT 7 cut(s) 111, 239, 263, 371, 439, 491, 542
TatI WGTACW 2 cut(s) 375, 757
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 4 cut(s) 218, 266, 278, 581
Tru9I TTAA 4 cut(s) 218, 266, 278, 581
TscAI CASTG 5 cut(s) 76, 96, 127, 336, 505
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 402, 450, 599
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 5 cut(s) 76, 96, 127, 336, 505
VneI GTGCAC 1 cut(s) 327
XapI RAATTY 3 cut(s) 239, 439, 491
XceI RCATGY 2 cut(s) 100, 451
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.