Rh6DG020800

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Forward (+)
1844279 .. 1844716
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG020800.1

Sequence Viewer

Length: 438 bp
ATGTCTCCAGCAATGGGAGATTCATTCTTCTTATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCCATGGGGGATTTTTCTCTTGGATTGTACAACCTTCGGCTTCTCTTCTTGCTGTTATTCGATCTGTTTCAAACATCTTTTGCAAGGACCGTGCAGCTGATTCTTGTACTTTAACTTATGTAATGCATGCTATGGCTTGTGAAAGGCTTGTGGATTTGAATAGTCGTATAAAGTCTGTTCGGTATTTGATTGAAAACGGTGACAATCTGGTGCAAGTTGTGGAGATCGCTTCTTTGAGGCAAGAGGCAGCAGGACTCACTGGTTTTGTGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCAAATATTCACTTCTGCTGATACGACTAATAACAAGATGGCTATCTACGAAAGTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

145

Amino Acids

16.26

Weight (kDa)

4.64

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 64, 77
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 99, 178
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 141, 229, 263
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 64, 77
ApeKI GCWGC 2 cut(s) 164, 317
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 157
BamHI GGATCC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 176, 329
BccI CCATC 3 cut(s) 46, 334, 406
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 2 cut(s) 165, 318
BlsI GCNGC 2 cut(s) 166, 319
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 71
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BsaBI GATNNNNATC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 176, 329
BsgI GTGCAG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 4 cut(s) 69, 131, 294, 367
Bsp19I CCATGG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 64, 77
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 4 cut(s) 69, 131, 294, 367
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 161, 269
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 4 cut(s) 72, 134, 297, 370
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 69, 131, 294, 367
BstNSI RCATGY 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 176, 329
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 98, 177
CviAII CATG 2 cut(s) 74, 197
CviJI RGCY 5 cut(s) 110, 167, 206, 217, 416
CviKI_1 RGCY 5 cut(s) 110, 167, 206, 217, 416
CviQI GTAC 2 cut(s) 98, 177
DpnI GATC 4 cut(s) 71, 133, 296, 369
DpnII GATC 4 cut(s) 69, 131, 294, 367
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 77, 200
FaiI YATR 5 cut(s) 75, 189, 198, 203, 239
FatI CATG 2 cut(s) 73, 196
Fnu4HI GCNGC 2 cut(s) 165, 318
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 165, 318
GluI GCNGC 2 cut(s) 165, 318
Hin1II CATG 2 cut(s) 77, 200
HinfI GANTC 3 cut(s) 20, 170, 324
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 64, 364
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 161, 269
HpyCH4V TGCA 4 cut(s) 153, 164, 196, 283
Hsp92II CATG 2 cut(s) 77, 200
Kzo9I GATC 4 cut(s) 69, 131, 294, 367
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 6 cut(s) 21, 24, 28, 263, 306, 315
Lsp1109I GCAGC 2 cut(s) 176, 329
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 71, 133, 296, 369
MboI GATC 4 cut(s) 69, 131, 294, 367
MboII GAAGA 3 cut(s) 19, 107, 377
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 348
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 3 cut(s) 300, 307, 359
Mph1103I ATGCAT 1 cut(s) 198
MseI TTAA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 167
NcoI CCATGG 1 cut(s) 73
NdeII GATC 4 cut(s) 69, 131, 294, 367
NlaIII CATG 2 cut(s) 77, 200
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 1 cut(s) 200
PaeI GCATGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 20, 170
PkrI GCNGC 2 cut(s) 166, 319
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 2 cut(s) 99, 178
RsaNI GTAC 2 cut(s) 98, 177
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 2 cut(s) 165, 318
Sau3AI GATC 4 cut(s) 69, 131, 294, 367
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 318
SduI GDGCHC 1 cut(s) 348
SetI ASST 3 cut(s) 106, 169, 351
SinI GGWCC 1 cut(s) 157
SphI GCATGC 1 cut(s) 200
SspI AATATT 1 cut(s) 381
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 161, 269
TaqI TCGA 1 cut(s) 130
TatI WGTACW 2 cut(s) 97, 176
TfiI GAWTC 2 cut(s) 20, 170
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 164, 317
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 157
XceI RCATGY 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.