Prupe.7G026800_v2.0.a1

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000290
Physical Location & Seq
Reverse (-)
4440070 .. 4443852
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G026800.21

Sequence Viewer

Length: 984 bp
ATGATCAAACACAAAAAAAGAACCATAGCAATATTATGCTGCTCCTTAATTTGTATTAGCCTTCATTTGCAGGGTTTTCAAAGAGGGATCAGATCTGTTTCTGCAACTGCTGACCTTCTGACTACTGGGAAAGAATGCAAAATGGCTTTCGGCGAAAAGGCAAACATTGTTGCAAGTGGCACAATAGTTGAGATTAATGTGCCAAACCAGCTGGTTCATAATGTTCCTTTGGGAGAGGGGAGCATAAGAGTAGCTGTGAATTGTGCACTAAAGGGAGATTCTCCACTACCAATCCCTGTGAAAGGAGTGTTCGAAACGGTTGGAGATGCCCTTGGGTCGCAAGTAGCTTGGCCTCAAGATCTTATTGTCTTTGATGATAAAGTGAAGAAGGAGGAAACTACAAAGGAAAAATTAGCAAAGACTTTATTCAAGTCTATATCACCAACAATGCCAAAGTCTTGCAACGTTTTATATGCATACGCACATCAAGTGATGTCCAAAGGTCAGACTATCTCCACAAATACTGATGAGGACATATTTGGGGTGAAAAAGATTGTATACATCTTTCAAGAACAAGTTATCGTGTTCGCTGAAATGAGAGAAATAGGACAAGCTATAATAATTGCTCATATTAGCTATTTATTTCGCTTGGTAAAAAGCCAACAAAGGGATCAAGTGATTGGATTTATGGACCCAGCACGTACCGCACATGATCCAAGATATGGGAATTTGTGGGGACATTGGATCCTAACAATAATTGATGAGGACAAAGATAATGTGTATGTCATGGATCCTCTTGGGGCTCGTCACCCTCAAGATGCATGGAAAGCTGTTCTAAATAATGGGATCAAAGCTTTCAATGCGCAAATTAAGAGACGAACTTGTAAATTACCGACATGGATTATGTTTTCGGGTGCTCCTAAACAAAGCGATGGCAAGTCATGTGGGTATTTTGTGATGAGATACATGAAAGACATTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

328

Amino Acids

36.49

Weight (kDa)

9.14

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 864
AccB7I CCANNNNNTGG 1 cut(s) 722
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 705
AclI AACGTT 1 cut(s) 465
AclWI GGATC 8 cut(s) 95, 678, 707, 739, 752, 785, 798, 854
AcsI RAATTY 1 cut(s) 727
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 3 cut(s) 302, 667, 722
AgsI TTSAA 4 cut(s) 80, 430, 569, 859
AluBI AGCT 7 cut(s) 211, 254, 347, 614, 636, 830, 854
AluI AGCT 7 cut(s) 211, 254, 347, 614, 636, 830, 854
Alw21I GWGCWC 2 cut(s) 268, 919
Alw26I GTCTC 1 cut(s) 868
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 8 cut(s) 95, 678, 707, 739, 752, 785, 798, 854
AoxI GGCC 1 cut(s) 350
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 727
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 865
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 3 cut(s) 432, 556, 800
AsuII TTCGAA 1 cut(s) 312
AvaII GGWCC 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 268
BamHI GGATCC 2 cut(s) 744, 790
BanII GRGCYC 1 cut(s) 805
Bbv12I GWGCWC 2 cut(s) 268, 919
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 926
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 868
BglII AGATCT 2 cut(s) 92, 358
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 3 cut(s) 693, 746, 792
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 316, 808
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 339, 798
BsaAI YACGTR 1 cut(s) 701
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 667, 722
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 331
BseLI CCNNNNNNNGG 3 cut(s) 302, 667, 722
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 694
BshFI GGCC 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 268, 919
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 3 cut(s) 302, 667, 722
BsmAI GTCTC 1 cut(s) 868
BsmBI CGTCTC 1 cut(s) 868
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 3 cut(s) 268, 805, 919
Bsp143I GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
BspACI CCGC 1 cut(s) 705
BspANI GGCC 1 cut(s) 352
BspLI GGNNCC 3 cut(s) 693, 746, 792
BspPI GGATC 8 cut(s) 95, 678, 707, 739, 752, 785, 798, 854
BspT104I TTCGAA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
BssNAI GTATAC 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 331
Bst1107I GTATAC 1 cut(s) 559
Bst4CI ACNGT 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 701
BstBI TTCGAA 1 cut(s) 312
BstENI CCTNNNNNAGG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 865
BstKTI GATC 9 cut(s) 6, 90, 95, 361, 673, 715, 747, 793, 849
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
BstMWI GCNNNNNNNGC 4 cut(s) 208, 704, 827, 860
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 4 cut(s) 92, 358, 744, 790
BstYI RGATCY 4 cut(s) 92, 358, 744, 790
BstZ17I GTATAC 1 cut(s) 559
BsuRI GGCC 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 945
CfoI GCGC 1 cut(s) 865
Cfr13I GGNCC 1 cut(s) 691
Csp6I GTAC 1 cut(s) 702
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 6 cut(s) 710, 787, 822, 897, 942, 967
CviQI GTAC 1 cut(s) 702
DpnI GATC 9 cut(s) 5, 89, 94, 360, 672, 714, 746, 792, 848
DpnII GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 2 cut(s) 478, 823
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 868
FaeI CATG 6 cut(s) 713, 790, 825, 900, 945, 970
FaqI GGGAC 1 cut(s) 750
FatI CATG 6 cut(s) 709, 786, 821, 896, 941, 966
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 1 cut(s) 40
FspI TGCGCA 1 cut(s) 864
GlaI GCGC 1 cut(s) 864
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 1 cut(s) 352
HhaI GCGC 1 cut(s) 865
Hin1II CATG 6 cut(s) 713, 790, 825, 900, 945, 970
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HindIII AAGCTT 1 cut(s) 852
HinfI GANTC 1 cut(s) 278
HphI GGTGA 3 cut(s) 432, 556, 800
Hpy166II GTNNAC 2 cut(s) 266, 559
Hpy188I TCNGA 3 cut(s) 92, 120, 507
Hpy188III TCNNGA 3 cut(s) 356, 569, 815
Hpy8I GTNNAC 2 cut(s) 266, 559
HpyAV CCTTC 3 cut(s) 71, 125, 382
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 2 cut(s) 465, 700
HpyCH4V TGCA 8 cut(s) 70, 104, 138, 173, 266, 462, 476, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 704, 827, 860
HpySE526I ACGT 2 cut(s) 465, 700
Hsp92II CATG 6 cut(s) 713, 790, 825, 900, 945, 970
HspAI GCGC 1 cut(s) 863
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
LmnI GCTCC 3 cut(s) 47, 240, 922
LpnPI CCDG 6 cut(s) 56, 111, 197, 221, 309, 708
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 316, 808
MaeII ACGT 2 cut(s) 465, 700
MaeIII GTNAC 1 cut(s) 806
MalI GATC 9 cut(s) 5, 89, 94, 360, 672, 714, 746, 792, 848
MboI GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
MboII GAAGA 1 cut(s) 397
MflI RGATCY 4 cut(s) 92, 358, 744, 790
MhlI GDGCHC 3 cut(s) 268, 805, 919
MluCI AATT 8 cut(s) 48, 259, 410, 621, 727, 756, 867, 887
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 8 cut(s) 77, 229, 363, 385, 523, 757, 804, 822
Mph1103I ATGCAT 2 cut(s) 478, 823
MseI TTAA 3 cut(s) 47, 195, 870
MspA1I CMGCKG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 4 cut(s) 208, 704, 827, 860
NdeII GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
NlaIII CATG 6 cut(s) 713, 790, 825, 900, 945, 970
NlaIV GGNNCC 3 cut(s) 693, 746, 792
NmuCI GTSAC 1 cut(s) 806
NsbI TGCGCA 1 cut(s) 864
NsiI ATGCAT 2 cut(s) 478, 823
NspV TTCGAA 1 cut(s) 312
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 722
PkrI GCNGC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 693, 746, 792
PspPI GGNCC 1 cut(s) 691
PsuI RGATCY 4 cut(s) 92, 358, 744, 790
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
SaqAI TTAA 3 cut(s) 47, 195, 870
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 9 cut(s) 3, 87, 92, 358, 670, 712, 744, 790, 846
Sau96I GGNCC 1 cut(s) 691
SduI GDGCHC 3 cut(s) 268, 805, 919
SfaNI GCATC 2 cut(s) 316, 808
SfuI TTCGAA 1 cut(s) 312
SinI GGWCC 1 cut(s) 691
SmlI CTYRAG 2 cut(s) 354, 813
SmoI CTYRAG 2 cut(s) 354, 813
Sse9I AATT 8 cut(s) 48, 259, 410, 621, 727, 756, 867, 887
SsiI CCGC 1 cut(s) 705
SspI AATATT 1 cut(s) 33
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 2 cut(s) 468, 703
TaqI TCGA 1 cut(s) 312
TasI AATT 8 cut(s) 48, 259, 410, 621, 727, 756, 867, 887
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 3 cut(s) 47, 195, 870
Tru9I TTAA 3 cut(s) 47, 195, 870
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 3 cut(s) 53, 206, 983
Van91I CCANNNNNTGG 1 cut(s) 722
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 691
VspI ATTAAT 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 558
Zsp2I ATGCAT 2 cut(s) 478, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.