Rh2CG258700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000290
Physical Location & Seq
Reverse (-)
27663524 .. 27663781
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG258700.1

Sequence Viewer

Length: 258 bp
ATGGGTTCTAAGAAGAAGGAAAAGGTTGAAAGAGATAAAAAGCCAAAGAAAGAAGCTGATTTGGAGACTTGTTCTGAGGCTGACAAGGTGGCTGATAAGAAAGCAGAATCTGAATCTGCAGAGACCATCACAAGCACCGAATCAACTAAAAGAAGAGGGAAGCGAAGTGTGGTGGAAATGTATAAGGTTGTGATCGAGAAGGCTTTGGGAAAAAAATTTAAAGTGACATACACCGACACCGGGAATCCCAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

9.43

Isoelectric Point (pI)

27.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 59, 116
AlwNI CAGNNNCTG 1 cut(s) 110
ApoI RAATTY 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 241
BccI CCATC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 59, 116
BfmI CTRYAG 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 2 cut(s) 59, 116
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 116
BssMI GATC 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 9, 75
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 2 cut(s) 59, 116
BstMBI GATC 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 110
CviJI RGCY 5 cut(s) 43, 56, 80, 92, 203
CviKI_1 RGCY 5 cut(s) 43, 56, 80, 92, 203
DdeI CTNAG 2 cut(s) 9, 75
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 116
FaiI YATR 2 cut(s) 183, 229
HapII CCGG 1 cut(s) 240
HinfI GANTC 4 cut(s) 107, 113, 140, 244
HpaII CCGG 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 76, 112
Hpy188III TCNNGA 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 10, 193
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 9, 75
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 25, 165
MluCI AATT 1 cut(s) 215
MnlI CCTC 2 cut(s) 70, 149
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 241
NciI CCSGG 1 cut(s) 241
NdeII GATC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 107, 113, 140, 244
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 241
SetI ASST 4 cut(s) 27, 58, 90, 189
SfcI CTRYAG 1 cut(s) 117
SgeI CNNG 6 cut(s) 81, 97, 144, 208, 252, 253
Sse9I AATT 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 239
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 215
TfiI GAWTC 4 cut(s) 107, 113, 140, 244
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
XapI RAATTY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.