Rroxscaffold_5G00377480

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000290
Physical Location & Seq
Forward (+)
58074716 .. 58077252
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377480.1

Sequence Viewer

Length: 453 bp
ATGATGTCACCAACACAGAAACAATCATCGAGAGACAAGACATCCAAGAAAAAAAAATCTAAAGCCAAGAATGATGAGGTGCTTGAGCCCATGGAGGACTTTCAATCAAAGGAGACTATCAACACCTCACCTTTGGTCAGAGCGAAGCGTGGTGTCACAGAAATGCATATGGTTGTTTTGAAAAAAGCTTTGGGTAAAAGATATCAAGTTCAGTACACTAGACTTGGTGTACCAAGAGGGAGAGTACGTTCGATGCTGCAGTCTTACATTGGAGTTTTGGCACGAACTATGGTTCCTATGAACATCCCAAACTGGCCAAACGTTCCACGGGATATTATAAAAGAAAAAATATGGAAAGAGATTGAGGGTGCTTTCATTATGGCTCCTGAAAAAGTAAGAAGCTGGTGTTATCATCTGCTGCCTCTAAATGGAGACAATTCAAGACCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

150

Amino Acids

17.31

Weight (kDa)

10.2

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AclI AACGTT 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 314
AfaI GTAC 3 cut(s) 215, 231, 246
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 3 cut(s) 104, 181, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AloI GAACNNNNNNTCC 4 cut(s) 232, 264, 277, 309
AluBI AGCT 2 cut(s) 188, 402
AluI AGCT 2 cut(s) 188, 402
Alw26I GTCTC 3 cut(s) 27, 107, 426
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 256, 418
AsuHPI GGTGA 1 cut(s) 120
BalI TGGCCA 1 cut(s) 316
BanII GRGCYC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 243, 405
BcoDI GTCTC 3 cut(s) 27, 107, 426
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 257, 419
BlsI GCNGC 2 cut(s) 258, 420
BmiI GGNNCC 2 cut(s) 294, 384
BmsI GCATC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 90, 326
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 90, 326
BseGI GGATG 2 cut(s) 41, 303
BseLI CCNNNNNNNGG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 243, 405
BshFI GGCC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 3 cut(s) 27, 107, 426
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 294, 384
BspMAI CTGCAG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 90, 326
BssT1I CCWWGG 1 cut(s) 90
BstDSI CCRYGG 2 cut(s) 90, 326
BstF5I GGATG 2 cut(s) 41, 303
BstMAI GTCTC 3 cut(s) 27, 107, 426
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 243, 405
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 2 cut(s) 90, 326
BtsCI GGATG 2 cut(s) 41, 303
Csp6I GTAC 3 cut(s) 214, 230, 245
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 65, 88, 188, 316, 383, 402
CviKI_1 RGCY 6 cut(s) 65, 88, 188, 316, 383, 402
CviQI GTAC 3 cut(s) 214, 230, 245
EaeI YGGCCR 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 203
EcoRV GATATC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 94
FaiI YATR 8 cut(s) 92, 168, 170, 290, 299, 338, 352, 380
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 257, 419
FokI GGATG 2 cut(s) 28, 290
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 257, 419
FspBI CTAG 1 cut(s) 219
GluI GCNGC 2 cut(s) 257, 419
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 186
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 216, 230
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 3 cut(s) 30, 386, 441
Hpy8I GTNNAC 2 cut(s) 216, 230
HpyCH4IV ACGT 2 cut(s) 247, 321
HpyCH4V TGCA 2 cut(s) 166, 259
HpySE526I ACGT 2 cut(s) 247, 321
Hsp92II CATG 1 cut(s) 94
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 3 cut(s) 298, 388, 399
Lsp1109I GCAGC 2 cut(s) 243, 405
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 247, 321
MaeIII GTNAC 2 cut(s) 6, 154
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 316
MluCI AATT 1 cut(s) 436
MluNI TGGCCA 1 cut(s) 316
MnlI CCTC 6 cut(s) 70, 88, 136, 230, 358, 432
Mox20I TGGCCA 1 cut(s) 316
Mph1103I ATGCAT 1 cut(s) 168
MscI TGGCCA 1 cut(s) 316
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 316
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 168
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 294, 384
NmuCI GTSAC 2 cut(s) 6, 154
NsiI ATGCAT 1 cut(s) 168
PkrI GCNGC 2 cut(s) 258, 420
PsiI TTATAA 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 294, 384
PstI CTGCAG 1 cut(s) 261
RsaI GTAC 3 cut(s) 215, 231, 246
RsaNI GTAC 3 cut(s) 214, 230, 245
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 2 cut(s) 257, 419
SduI GDGCHC 1 cut(s) 90
SetI ASST 7 cut(s) 81, 128, 133, 190, 250, 324, 404
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 436
SspMI CTAG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 2 cut(s) 250, 324
TaqI TCGA 2 cut(s) 29, 251
TasI AATT 1 cut(s) 436
TatI WGTACW 1 cut(s) 213
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TseFI GTSAC 2 cut(s) 6, 154
TseI GCWGC 2 cut(s) 256, 418
Tsp45I GTSAC 2 cut(s) 6, 154
TspDTI ATGAA 2 cut(s) 314, 364
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.