RchiOBHm_Chr3g0494431

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000290
Physical Location & Seq
Reverse (-)
43190048 .. 43190502
455 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45696

Sequence Viewer

Length: 339 bp
ATGGAATTGGTTCGTGAAGCTATTGGAAGTCACGTAGCTTGGCCTGAGGAGCTTGTTATTCGGAAACATCCATCAAAGAACAAGAAGAAGAAGAAGTGTCCTATTGTGAAATCATTGTTCGATAAAGTTGAGCTACACCCTTTTGTGCCCAAGCGCTGCAAGTTATTGTACAAACATGCCAAAACTATAATAGAAGAGACTAATGAGTCAATAAGCACAGTGTTGGATGATAAAGTCTTTGGCGTGCAAAAAGAACTCTACATCTTAATTGAGAATGTGACTAATCTCTTAGAAATGAAGTGGATTGGCCAAAGAGTGATAGCAGCATACATGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

112

Amino Acids

13.04

Weight (kDa)

9.37

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 307
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 155
AluBI AGCT 4 cut(s) 20, 38, 52, 133
AluI AGCT 4 cut(s) 20, 38, 52, 133
Alw26I GTCTC 1 cut(s) 191
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 2 cut(s) 41, 307
ApeKI GCWGC 2 cut(s) 156, 323
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 156
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 309
BbvI GCAGC 2 cut(s) 143, 335
BccI CCATC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 2 cut(s) 157, 324
BlsI GCNGC 2 cut(s) 158, 325
BsaAI YACGTR 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 67, 232
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 2 cut(s) 143, 335
BshFI GGCC 2 cut(s) 43, 309
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 43, 309
Bsp1286I GDGCHC 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 168
BspANI GGCC 2 cut(s) 43, 309
BspCNI CTCAG 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 45, 289
BstF5I GGATG 2 cut(s) 67, 232
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 143, 335
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 43, 309
BtsCI GGATG 2 cut(s) 67, 232
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 176, 331
CviJI RGCY 6 cut(s) 20, 38, 43, 52, 133, 309
CviKI_1 RGCY 6 cut(s) 20, 38, 43, 52, 133, 309
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 45, 289
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco47III AGCGCT 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 45
FaeI CATG 2 cut(s) 179, 334
FaiI YATR 4 cut(s) 177, 188, 328, 332
FatI CATG 2 cut(s) 175, 330
Fnu4HI GCNGC 2 cut(s) 157, 324
FokI GGATG 2 cut(s) 54, 239
Fsp4HI GCNGC 2 cut(s) 157, 324
GlaI GCGC 1 cut(s) 155
GluI GCNGC 2 cut(s) 157, 324
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 43, 309
HhaI GCGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 179, 334
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 33, 335
HpyCH4V TGCA 2 cut(s) 159, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 45, 289
HpySE526I ACGT 2 cut(s) 33, 335
Hsp92II CATG 2 cut(s) 179, 334
HspAI GCGC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 1 cut(s) 57
Lsp1109I GCAGC 2 cut(s) 143, 335
MaeII ACGT 2 cut(s) 33, 335
MaeIII GTNAC 2 cut(s) 29, 277
MboII GAAGA 4 cut(s) 97, 100, 103, 206
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 2 cut(s) 5, 267
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 1 cut(s) 40
Mox20I TGGCCA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 309
MseI TTAA 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 179, 334
NmuCI GTSAC 2 cut(s) 29, 277
NspI RCATGY 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 9
PkrI GCNGC 2 cut(s) 158, 325
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 34
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 2 cut(s) 157, 324
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 150
SetI ASST 6 cut(s) 22, 36, 40, 54, 135, 338
Sse9I AATT 2 cut(s) 5, 267
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 36, 338
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 5, 267
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 29, 277
TseI GCWGC 2 cut(s) 156, 323
Tsp45I GTSAC 2 cut(s) 29, 277
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 225
XceI RCATGY 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.