Rh4AG203100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000290
Physical Location & Seq
Reverse (-)
48847348 .. 48847764
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG203100.1

Sequence Viewer

Length: 417 bp
ATGTCCTCATCCTTTTCTAACAATTACATTGCCAATAGGGTTTTCTCTCTTTCTCTCTTAACACGCTGGGACGCGGGGTTGCCGTCAACACATAGGAGAGATCGATATGTGCTCCAACATCTTCAAAGCGTACCAACTCTCGAGAGATCGCTCTGCGCTCCAAGATCGCTCTGTCACCGCCTCTCTCTCTCTCTCTGGGCTGCCGTCGACATATCTTCCAAGATCGATCTGTGCTCCAACATCTTCAAAGATCGATCTGTTCTCCAACATCTTCAAAGATCGATCTGTGCTCCAATATCTTCAAAGCGTACCAACTTTCGAGAGATCGATATGTGCTCCAAGCTCTTCAAAGCGTACCAACTCTCGAGAGATCGATCTCAACAGCAAATTGATTCAGAAACTGATGAATTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.92

Weight (kDa)

9.36

Isoelectric Point (pI)

71.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 74, 178
AfaI GTAC 3 cut(s) 132, 310, 356
AgsI TTSAA 5 cut(s) 125, 247, 275, 303, 349
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw21I GWGCWC 4 cut(s) 114, 236, 292, 338
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 2 cut(s) 140, 364
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 2 cut(s) 140, 364
Bbv12I GWGCWC 4 cut(s) 114, 236, 292, 338
BbvI GCAGC 1 cut(s) 187
BceAI ACGGC 2 cut(s) 67, 188
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmeT110I CYCGRG 2 cut(s) 140, 364
Bsa29I ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
Bse3DI GCAATG 1 cut(s) 27
BseCI ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
BseGI GGATG 1 cut(s) 8
BseMI GCAATG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 74
BshVI ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
BsiHKAI GWGCWC 4 cut(s) 114, 236, 292, 338
BsiHKCI CYCGRG 2 cut(s) 140, 364
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsoBI CYCGRG 2 cut(s) 140, 364
Bsp1286I GDGCHC 4 cut(s) 114, 236, 292, 338
BspACI CCGC 2 cut(s) 74, 178
BspDI ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
BspFNI CGCG 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 350
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 158
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 187
Bsu15I ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
BsuTUI ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
BtsCI GGATG 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 1 cut(s) 158
ClaI ATCGAT 6 cut(s) 103, 225, 253, 281, 327, 373
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 131, 309, 355
CviJI RGCY 2 cut(s) 200, 343
CviKI_1 RGCY 2 cut(s) 200, 343
CviQI GTAC 3 cut(s) 131, 309, 355
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 140, 364
FaiI YATR 4 cut(s) 93, 108, 212, 332
FaqI GGGAC 1 cut(s) 83
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 70
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 2 cut(s) 87, 208
HindII GTYRAC 2 cut(s) 87, 208
HinfI GANTC 1 cut(s) 392
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 87, 208
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 5 cut(s) 140, 142, 320, 364, 366
Hpy8I GTNNAC 2 cut(s) 87, 208
Hpy99I CGWCG 1 cut(s) 209
HspAI GCGC 1 cut(s) 156
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 5 cut(s) 117, 163, 239, 295, 341
LpnPI CCDG 2 cut(s) 52, 181
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 6 cut(s) 113, 207, 235, 263, 291, 337
MhlI GDGCHC 4 cut(s) 114, 236, 292, 338
MluCI AATT 3 cut(s) 22, 387, 407
MmeI TCCRAC 3 cut(s) 139, 261, 289
MnlI CCTC 2 cut(s) 16, 191
MseI TTAA 1 cut(s) 59
MvnI CGCG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 173
PaeR7I CTCGAG 2 cut(s) 140, 364
PciSI GCTCTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 132, 310, 356
RsaNI GTAC 3 cut(s) 131, 309, 355
SalI GTCGAC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 201
SduI GDGCHC 4 cut(s) 114, 236, 292, 338
SetI ASST 1 cut(s) 345
Sfr274I CTCGAG 2 cut(s) 140, 364
SlaI CTCGAG 2 cut(s) 140, 364
SmlI CTYRAG 2 cut(s) 140, 364
SmoI CTYRAG 2 cut(s) 140, 364
Sse9I AATT 3 cut(s) 22, 387, 407
SsiI CCGC 2 cut(s) 74, 178
TasI AATT 3 cut(s) 22, 387, 407
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 173
XhoI CTCGAG 2 cut(s) 140, 364
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.