Rh6DG187500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000290
Physical Location & Seq
Forward (+)
33392204 .. 33393393
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG187500.1

Sequence Viewer

Length: 513 bp
ATGGGTTCCAAGAAGGGAATTCGCAAATCTCCAAGAGGCAAAAAATCAAAGAAAAAGAAAGATGAGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGACGATTCTATATCAGCCAACACTGTCACGAGCACTGAATCAGCTGCTGCTAGAGGGAAGCGAAATGTGGTTGCCATGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAAGTTTAAAGTGACATACACTGACACGGGCAATCTAAATAGATCAATAAGGCACACTCTACAGTCTTATATAGGAATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCGACGTGGACGGTGACTTGAAGGATAAACTTTGGCTCGATGTTAAGAAAAAGACTTTGCCTGAAGGAGAGGTAATAGATCGTGCAATTATGTGGAAGAAAGCCCGTCAACGTAAAGATGGGGACATAGATGAAGAGGCTAGAGCTGTGGTGACAAAGATAGTAAGTGCCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

170

Amino Acids

19.11

Weight (kDa)

9.88

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccII CGCG 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 2 cut(s) 101, 358
AjiI CACGTC 1 cut(s) 343
AluBI AGCT 4 cut(s) 152, 209, 333, 482
AluI AGCT 4 cut(s) 152, 209, 333, 482
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 62, 77
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 152, 155
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 362, 499
BaeGI GKGCMC 2 cut(s) 318, 508
BanI GGYRCC 1 cut(s) 313
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 139, 142
BccI CCATC 2 cut(s) 326, 449
BcoDI GTCTC 2 cut(s) 62, 77
BfaI CTAG 2 cut(s) 159, 477
BfmI CTRYAG 1 cut(s) 278
BisI GCNGC 2 cut(s) 153, 156
BlsI GCNGC 2 cut(s) 154, 157
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 7, 315
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 2 cut(s) 318, 508
BseXI GCAGC 2 cut(s) 139, 142
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 143
BslFI GGGAC 1 cut(s) 473
BsmAI GTCTC 2 cut(s) 62, 77
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 3 cut(s) 143, 318, 508
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 260, 415
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 7, 315
BspT107I GGYRCC 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 186
BssMI GATC 2 cut(s) 260, 415
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 133, 282, 350
Bst6I CTCTTC 1 cut(s) 465
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 81, 309
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 263, 418
BstMAI GTCTC 2 cut(s) 62, 77
BstMBI GATC 2 cut(s) 260, 415
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 2 cut(s) 318, 508
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 139, 142
BsuRI GGCC 1 cut(s) 337
BtrI CACGTC 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 129, 141, 237
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 184
CviJI RGCY 9 cut(s) 125, 152, 209, 333, 337, 373, 440, 476, 482
CviKI_1 RGCY 9 cut(s) 125, 152, 209, 333, 337, 373, 440, 476, 482
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 81, 309
DpnI GATC 2 cut(s) 262, 417
DpnII GATC 2 cut(s) 260, 415
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 18
FaeI CATG 1 cut(s) 187
FaiI YATR 7 cut(s) 119, 185, 235, 288, 290, 428, 464
FaqI GGGAC 1 cut(s) 473
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 153, 156
Fsp4HI GCNGC 2 cut(s) 153, 156
FspBI CTAG 2 cut(s) 159, 477
GlaI GCGC 1 cut(s) 303
GluI GCNGC 2 cut(s) 153, 156
HaeIII GGCC 1 cut(s) 337
HhaI GCGC 1 cut(s) 304
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 2 cut(s) 113, 146
HphI GGTGA 2 cut(s) 362, 499
Hpy166II GTNNAC 2 cut(s) 346, 446
Hpy188III TCNNGA 2 cut(s) 136, 202
Hpy8I GTNNAC 2 cut(s) 346, 446
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 7, 352, 395
HpyCH4III ACNGT 3 cut(s) 133, 282, 350
HpyCH4IV ACGT 2 cut(s) 342, 448
HpyCH4V TGCA 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 81, 309
HpySE526I ACGT 2 cut(s) 342, 448
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 260, 415
LpnPI CCDG 3 cut(s) 93, 319, 411
Lsp1109I GCAGC 2 cut(s) 139, 142
MaeI CTAG 2 cut(s) 159, 477
MaeII ACGT 2 cut(s) 342, 448
MaeIII GTNAC 4 cut(s) 133, 229, 350, 487
MalI GATC 2 cut(s) 262, 417
MboI GATC 2 cut(s) 260, 415
MboII GAAGA 3 cut(s) 113, 445, 482
MhlI GDGCHC 3 cut(s) 143, 318, 508
MluCI AATT 2 cut(s) 18, 423
MnlI CCTC 5 cut(s) 29, 58, 155, 400, 466
MseI TTAA 3 cut(s) 225, 381, 511
MspA1I CMGCKG 1 cut(s) 152
MvnI CGCG 1 cut(s) 304
NdeII GATC 2 cut(s) 260, 415
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 2 cut(s) 7, 315
NmuCI GTSAC 4 cut(s) 133, 229, 350, 487
PfeI GAWTC 2 cut(s) 113, 146
PkrI GCNGC 2 cut(s) 154, 157
PspN4I GGNNCC 2 cut(s) 7, 315
PspPI GGNCC 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 225, 381, 511
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 2 cut(s) 260, 415
Sau96I GGNCC 1 cut(s) 336
SduI GDGCHC 3 cut(s) 143, 318, 508
SfcI CTRYAG 1 cut(s) 278
Sse9I AATT 2 cut(s) 18, 423
SsiI CCGC 1 cut(s) 304
SspMI CTAG 2 cut(s) 159, 477
TaaI ACNGT 3 cut(s) 133, 282, 350
TaiI ACGT 2 cut(s) 345, 451
TaqI TCGA 1 cut(s) 375
TasI AATT 2 cut(s) 18, 423
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 113, 146
Tru1I TTAA 3 cut(s) 225, 381, 511
Tru9I TTAA 3 cut(s) 225, 381, 511
TscAI CASTG 3 cut(s) 136, 148, 244
TseFI GTSAC 4 cut(s) 133, 229, 350, 487
TseI GCWGC 2 cut(s) 152, 155
Tsp45I GTSAC 4 cut(s) 133, 229, 350, 487
TspDTI ATGAA 2 cut(s) 105, 483
TspRI CASTG 3 cut(s) 136, 148, 244
XapI RAATTY 1 cut(s) 18
XspI CTAG 2 cut(s) 159, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.