Rmu_sc0009330.1_g000004

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009330.1
OG0000290
Physical Location & Seq
Reverse (-)
10266 .. 11836
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009330.1_g000004.1.cds

Sequence Viewer

Length: 987 bp
atgggttccaagaagggaatttgcaaatctccaagaggcaaaaaatcaaagaaaaagaaagatgacgagacttctcaacctgagactgatgaagtgcttgaagaaaaagacgattctgtatcagccaacactgtcacgagcactgaatcaactgctgctagagggaagcgaaatgtgattgccatgtacaaggtcttggtcaagaaagctttggaaaaaaagtttaaagtgacatacatcgacacgggtaatctaaatggatcaataaggcacactctacagtcttacataggaatgttggcgcggactaaggtgcccatcaacattgtaagctggcccgacgtggacggtgacttgaaggataaactttggctcgatattaaggatacattcaaggtcgcccctgaaagtaagaaactggtattgacaactgctggcactaaatggagagcattcaagaccatgttaacaagaaaatatgtgctcccatacttaggaaagaagaagaagaagttgagaaagccaccaagtcaatatgcatttgttgggaggcaaccatggaggcaatttgtgaaagaaaggactaccgagaaatggctgaaaaagactttgcctgaaggagaggtaatagatcgtgcaattatgtggaagaaagcccgtcaacgtaaagatggggacatagatgaagaggctagagctgtggtgacaaagatagatgatttgttggagaagaaaagtaagggtgagattgagatttcagggagtaatgatgttctttctcaagcattagaaactcctgaacactcgggtagggtgaggggtgttggaggcttcatcaatccctccacatactttaaacttccgaagctgaaaaggtttagaattaccaaggcagacttactagcacgtgatagagagcatgatagagagttggaggagacaaagaaaatgctcactgcacagcaagcaaaggcagaagagctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

328

Amino Acids

37.45

Weight (kDa)

9.85

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccII CGCG 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 636
AcvI CACGTG 1 cut(s) 908
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 494, 594
AgsI TTSAA 4 cut(s) 101, 358, 394, 457
AjiI CACGTC 1 cut(s) 343
AluBI AGCT 5 cut(s) 209, 333, 698, 868, 982
AluI AGCT 5 cut(s) 209, 333, 698, 868, 982
Alw21I GWGCWC 3 cut(s) 143, 486, 984
Alw26I GTCTC 3 cut(s) 62, 77, 932
AlwI GGATC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 4 cut(s) 362, 715, 755, 826
AvaI CYCGRG 1 cut(s) 805
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 984
BauI CACGAG 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 908
Bbv12I GWGCWC 3 cut(s) 143, 486, 984
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 326, 665
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 62, 77, 932
BfaI CTAG 3 cut(s) 159, 693, 902
BfmI CTRYAG 1 cut(s) 278
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 805
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 7, 315
BpuEI CTTGAG 1 cut(s) 765
BsaAI YACGTR 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 557, 888
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 594
Bse1I ACTGG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 557, 888
BseLI CCNNNNNNNGG 2 cut(s) 494, 594
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 950
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 3 cut(s) 143, 486, 984
BsiHKCI CYCGRG 1 cut(s) 805
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 2 cut(s) 494, 594
BsmAI GTCTC 3 cut(s) 62, 77, 932
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 1 cut(s) 337
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 4 cut(s) 143, 318, 486, 984
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 260, 631
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 7, 315
BspPI GGATC 1 cut(s) 268
BspQI GCTCTTC 1 cut(s) 972
BspT107I GGYRCC 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 557, 888
BssMI GATC 2 cut(s) 260, 631
BssSI CACGAG 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 557, 888
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 133, 282, 350
Bst6I CTCTTC 2 cut(s) 681, 972
BstAUI TGTACA 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 908
BstC8I GCNNGC 3 cut(s) 335, 436, 966
BstDEI CTNAG 3 cut(s) 81, 309, 493
BstDSI CCRYGG 1 cut(s) 557
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 263, 634
BstMAI GTCTC 3 cut(s) 62, 77, 932
BstMBI GATC 2 cut(s) 260, 631
BstMWI GCNNNNNNNGC 1 cut(s) 965
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 142
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 557
BtrI CACGTC 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 3 cut(s) 129, 141, 954
Cac8I GCNNGC 3 cut(s) 335, 436, 966
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 184, 463, 558, 920
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 81, 309, 493
DpnI GATC 2 cut(s) 262, 633
DpnII GATC 2 cut(s) 260, 631
DraI TTTAAA 2 cut(s) 226, 856
Eam1104I CTCTTC 2 cut(s) 681, 972
EarI CTCTTC 2 cut(s) 681, 972
Ecl136II GAGCTC 1 cut(s) 982
Eco130I CCWWGG 2 cut(s) 557, 888
Eco24I GRGCYC 1 cut(s) 984
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 1 cut(s) 636
Eco72I CACGTG 1 cut(s) 908
Eco88I CYCGRG 1 cut(s) 805
EcoICRI GAGCTC 1 cut(s) 982
EcoT14I CCWWGG 2 cut(s) 557, 888
EcoT22I ATGCAT 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 2 cut(s) 557, 888
FaeI CATG 4 cut(s) 187, 466, 561, 923
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FaqI GGGAC 1 cut(s) 689
FatI CATG 4 cut(s) 183, 462, 557, 919
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 159, 693, 902
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 337
HhaI GCGC 1 cut(s) 304
Hin1II CATG 4 cut(s) 187, 466, 561, 923
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 2 cut(s) 468, 662
HindII GTYRAC 2 cut(s) 468, 662
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 2 cut(s) 113, 146
HpaI GTTAAC 1 cut(s) 468
HphI GGTGA 4 cut(s) 362, 715, 755, 826
Hpy166II GTNNAC 3 cut(s) 346, 468, 662
Hpy188I TCNGA 2 cut(s) 864, 986
Hpy188III TCNNGA 4 cut(s) 136, 202, 457, 797
Hpy8I GTNNAC 3 cut(s) 346, 468, 662
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 7, 352, 611
HpyCH4III ACNGT 3 cut(s) 133, 282, 350
HpyCH4IV ACGT 3 cut(s) 342, 664, 907
HpyCH4V TGCA 4 cut(s) 24, 539, 638, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 965
HpyF3I CTNAG 3 cut(s) 81, 309, 493
HpySE526I ACGT 3 cut(s) 342, 664, 907
Hsp92II CATG 4 cut(s) 187, 466, 561, 923
HspAI GCGC 1 cut(s) 302
KspAI GTTAAC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 260, 631
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 1 cut(s) 489
LpnPI CCDG 8 cut(s) 93, 319, 404, 417, 420, 627, 744, 810
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 3 cut(s) 159, 693, 902
MaeII ACGT 3 cut(s) 342, 664, 907
MaeIII GTNAC 4 cut(s) 133, 229, 350, 703
MalI GATC 2 cut(s) 262, 633
MboI GATC 2 cut(s) 260, 631
MboII GAAGA 7 cut(s) 113, 514, 517, 520, 661, 698, 742
MhlI GDGCHC 4 cut(s) 143, 318, 486, 984
MluCI AATT 4 cut(s) 18, 566, 639, 882
MmeI TCCRAC 3 cut(s) 705, 805, 912
Mph1103I ATGCAT 1 cut(s) 541
MseI TTAA 4 cut(s) 225, 381, 467, 855
MslI CAYNNNNRTG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 452
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 965
NcoI CCATGG 1 cut(s) 557
NdeII GATC 2 cut(s) 260, 631
NlaIII CATG 4 cut(s) 187, 466, 561, 923
NlaIV GGNNCC 2 cut(s) 7, 315
NmuCI GTSAC 4 cut(s) 133, 229, 350, 703
NsiI ATGCAT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 972
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 113, 146
PkrI GCNGC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 908
PmlI CACGTG 1 cut(s) 908
Ppu21I YACGTR 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 984
PspCI CACGTG 1 cut(s) 908
PspN4I GGNNCC 2 cut(s) 7, 315
PspPI GGNCC 1 cut(s) 336
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 984
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 4 cut(s) 225, 381, 467, 855
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 260, 631
Sau96I GGNCC 1 cut(s) 336
SduI GDGCHC 4 cut(s) 143, 318, 486, 984
SfcI CTRYAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
Sse9I AATT 4 cut(s) 18, 566, 639, 882
SsiI CCGC 1 cut(s) 304
SspMI CTAG 3 cut(s) 159, 693, 902
SstI GAGCTC 1 cut(s) 984
StyI CCWWGG 2 cut(s) 557, 888
TaaI ACNGT 3 cut(s) 133, 282, 350
TaiI ACGT 3 cut(s) 345, 667, 910
TaqI TCGA 2 cut(s) 240, 375
TasI AATT 4 cut(s) 18, 566, 639, 882
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 113, 146
Tru1I TTAA 4 cut(s) 225, 381, 467, 855
Tru9I TTAA 4 cut(s) 225, 381, 467, 855
TscAI CASTG 3 cut(s) 136, 148, 961
TseFI GTSAC 4 cut(s) 133, 229, 350, 703
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 4 cut(s) 133, 229, 350, 703
TspDTI ATGAA 3 cut(s) 105, 699, 823
TspRI CASTG 3 cut(s) 136, 148, 961
XapI RAATTY 1 cut(s) 18
XspI CTAG 3 cut(s) 159, 693, 902
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.