Rroxscaffold_7G00202010

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
49857861 .. 49858161
301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202010.1

Sequence Viewer

Length: 258 bp
ATGGTGATTCCGTTAAATGGGCCAATTCATGGAGTGCCATTAGGGGATGGTAACATACGTGTTTCTATAGAAGTACCTATCAAGGGTGAGGCTCTTCTGCCAGTACCTATTGGCGATGAAATTGTGACTCTTAGACAAGCAATTGAGACTCATGTGGCTTGGCCTCGGAATCTTGTCATAGTGACCAATGAAAAACGATTCTCTGTGACTATTAAATATATTAATCTATTTCTTTGTTTCACTGTTAGCCCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

6.71

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 2 - 61 5.8e-12 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AfaI GTAC 2 cut(s) 75, 105
AfiI CCNNNNNNNGG 3 cut(s) 17, 29, 83
AflIII ACRYGT 1 cut(s) 58
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 2 cut(s) 20, 161
AseI ATTAAT 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 16, 98
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 29, 83
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 17, 29, 83
BseNI ACTGG 1 cut(s) 101
BshFI GGCC 2 cut(s) 22, 163
BslI CCNNNNNNNGG 3 cut(s) 17, 29, 83
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 22, 163
BspANI GGCC 2 cut(s) 22, 163
BspQI GCTCTTC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 22, 163
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 74, 104
CviAII CATG 2 cut(s) 29, 152
CviJI RGCY 6 cut(s) 22, 92, 158, 163, 249, 255
CviKI_1 RGCY 6 cut(s) 22, 92, 158, 163, 249, 255
CviQI GTAC 2 cut(s) 74, 104
DdeI CTNAG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
FaeI CATG 2 cut(s) 32, 155
FaiI YATR 6 cut(s) 30, 56, 68, 153, 179, 219
FatI CATG 2 cut(s) 28, 151
FokI GGATG 1 cut(s) 59
HaeIII GGCC 2 cut(s) 22, 163
Hin1II CATG 2 cut(s) 32, 155
HinfI GANTC 5 cut(s) 7, 127, 148, 169, 198
HphI GGTGA 2 cut(s) 16, 98
Hpy188I TCNGA 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 32, 155
LguI GCTCTTC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 114
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 4 cut(s) 50, 124, 181, 205
MboII GAAGA 1 cut(s) 86
MfeI CAATTG 1 cut(s) 141
MluCI AATT 3 cut(s) 24, 120, 141
MlyI GAGTC 2 cut(s) 121, 142
MnlI CCTC 2 cut(s) 82, 174
MseI TTAA 3 cut(s) 14, 213, 222
MunI CAATTG 1 cut(s) 141
NlaIII CATG 2 cut(s) 32, 155
NmuCI GTSAC 3 cut(s) 124, 181, 205
PciSI GCTCTTC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 7, 169, 198
PflMI CCANNNNNTGG 1 cut(s) 29
PleI GAGTC 2 cut(s) 121, 142
PpsI GAGTC 2 cut(s) 121, 142
Ppu21I YACGTR 1 cut(s) 59
PshBI ATTAAT 1 cut(s) 222
PspPI GGNCC 1 cut(s) 20
RsaI GTAC 2 cut(s) 75, 105
RsaNI GTAC 2 cut(s) 74, 104
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 14, 213, 222
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 121, 142
SetI ASST 4 cut(s) 61, 79, 109, 257
SfcI CTRYAG 1 cut(s) 66
SgeI CNNG 9 cut(s) 41, 71, 94, 113, 149, 164, 171, 177, 185
Sse9I AATT 3 cut(s) 24, 120, 141
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 61
TasI AATT 3 cut(s) 24, 120, 141
TfiI GAWTC 3 cut(s) 7, 169, 198
Tru1I TTAA 3 cut(s) 14, 213, 222
Tru9I TTAA 3 cut(s) 14, 213, 222
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 3 cut(s) 124, 181, 205
Tsp45I GTSAC 3 cut(s) 124, 181, 205
TspDTI ATGAA 3 cut(s) 17, 132, 204
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 29
VspI ATTAAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.