RchiOBHm_Chr3g0494441

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000290
Physical Location & Seq
Reverse (-)
43191841 .. 43193175
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45697

Sequence Viewer

Length: 294 bp
ATGGTGCCCATTAACATAGAAAGCTGGCCCGAAGTTGACCGTGATGAGAAAGACAAACTTTGGATCGACGTTCAGGATACATTCAAAGTGGCCCCTGAAAGTAAGAAAATGGTGTTGGCATCTACTGGGACTAAATGGAGACAGTTTAAGACCAACTTAACAAATAAACATGTGCTGCCTTACTTGGGAAAGAGGAAGAAATTGAGAAAGCCTCCGAAGGGGTATGAATTCGTTGGGTTATTGCCATGGAGAGAATTTGTAAAACAGAGGAGTACAGAACAATGGCTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

97

Amino Acids

11.58

Weight (kDa)

9.89

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 227, 254
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 185, 218
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 26, 90
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 227, 254
AspS9I GGNCC 2 cut(s) 27, 91
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 162
BciVI GTATCC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 27, 91
BmiI GGNNCC 2 cut(s) 6, 93
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 218
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 2 cut(s) 185, 218
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 162
BshFI GGCC 2 cut(s) 28, 92
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 185, 218
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 28, 92
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 245
BspANI GGCC 2 cut(s) 28, 92
BspLI GGNNCC 2 cut(s) 6, 93
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 41, 144
BstC8I GCNNGC 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 162
BsuI GTATCC 1 cut(s) 70
BsuRI GGCC 2 cut(s) 28, 92
BtgI CCRYGG 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 27, 91
Csp6I GTAC 1 cut(s) 273
CviAII CATG 2 cut(s) 170, 246
CviJI RGCY 5 cut(s) 24, 28, 92, 211, 286
CviKI_1 RGCY 5 cut(s) 24, 28, 92, 211, 286
CviQI GTAC 1 cut(s) 273
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 173, 249
FaiI YATR 5 cut(s) 17, 171, 225, 247, 292
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 140, 172
FaqI GGGAC 1 cut(s) 142
FatI CATG 2 cut(s) 169, 245
Fnu4HI GCNGC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 28, 92
Hin1II CATG 2 cut(s) 173, 249
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 41, 144
HpyCH4IV ACGT 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 173, 249
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 10, 59, 108, 111, 272
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 128
MaeII ACGT 1 cut(s) 69
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 200, 227, 254
MnlI CCTC 3 cut(s) 186, 222, 261
MseI TTAA 3 cut(s) 12, 147, 158
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 63
NlaIII CATG 2 cut(s) 173, 249
NlaIV GGNNCC 2 cut(s) 6, 93
NspI RCATGY 1 cut(s) 173
PciI ACATGT 1 cut(s) 169
PkrI GCNGC 1 cut(s) 177
PscI ACATGT 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 6, 93
PspPI GGNCC 2 cut(s) 27, 91
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 12, 147, 158
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 2 cut(s) 27, 91
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 26, 72
SfaNI GCATC 1 cut(s) 128
SgeI CNNG 9 cut(s) 37, 41, 53, 86, 107, 138, 182, 196, 258
Sse9I AATT 3 cut(s) 200, 227, 254
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 41, 144
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 200, 227, 254
TatI WGTACW 1 cut(s) 272
Tru1I TTAA 3 cut(s) 12, 147, 158
Tru9I TTAA 3 cut(s) 12, 147, 158
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 240
XapI RAATTY 2 cut(s) 227, 254
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.