Rh4BG125100

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000290
Physical Location & Seq
Reverse (-)
20955682 .. 20965679
9998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG125100.1

Sequence Viewer

Length: 570 bp
ATGGGTTCCAAGAAGGGAATTCGAAAGTCACCAAGAGGCAAAAAATTAAAGAGAAAAGCTGTTTTGGAGACTTCTCAACCTGAGACTGATGAAGTGCTTGAAGAAAAAGAAGAATTTGTATCAGCTGACACTATCACGAGCACCGAATCAGTCAAAACCAGAGGGAAGCGTAATGTGGTAGCACTGTACAAGGTCTTGGTCAAGAAAGCTTTGGGAAAAAATTTTAAAGTATCATACACTGAAACGGGCAATCCAAATGGAAGAATAAGACACACTCTACAGTCTTACATAGGAATGTTGGCGCGGACTAAGGTGCCCATCAACATTGTAAGCTGGCCCGAAGTGGATGGTGACTTGAAGGATAAACTTTGGCTCAATGTTCAGAGAAAGACTTTGCCCGAAGGAGAGGTCATTGATCGTGCAATTATGTGGAAGAAAGCCCATCAACGAAAAGATGGGGACATAGATGAGGAGGCTAGAGCTGTGGCAAGAAAGATATCGTACAACAATAACTCAATTGGTTCTAGTACTCTTCTTCAAGATCATTCACAAATAACTTATTCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

189

Amino Acids

21.35

Weight (kDa)

9.81

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccII CGCG 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AcsI RAATTY 3 cut(s) 18, 113, 220
AfaI GTAC 3 cut(s) 188, 503, 529
AgsI TTSAA 3 cut(s) 101, 358, 539
AluBI AGCT 5 cut(s) 59, 125, 209, 333, 482
AluI AGCT 5 cut(s) 59, 125, 209, 333, 482
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 62, 77
AoxI GGCC 1 cut(s) 335
ApoI RAATTY 3 cut(s) 18, 113, 220
ArsI GACNNNNNNTTYG 2 cut(s) 393, 425
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 21, 362
AsuII TTCGAA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 313
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 4 cut(s) 326, 341, 449, 450
BcoDI GTCTC 2 cut(s) 62, 77
BfaI CTAG 2 cut(s) 477, 525
BfmI CTRYAG 1 cut(s) 278
BmcAI AGTACT 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 7, 315
Bpu14I TTCGAA 1 cut(s) 22
BseGI GGATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 143
BslFI GGGAC 1 cut(s) 473
BsmAI GTCTC 2 cut(s) 62, 77
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 1 cut(s) 337
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 143, 318
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 415, 541
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 7, 315
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 186
BssMI GATC 2 cut(s) 415, 541
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 186, 282
Bst6I CTCTTC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 81, 309
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 418, 544
BstMAI GTCTC 2 cut(s) 62, 77
BstMBI GATC 2 cut(s) 415, 541
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 304
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 182, 237
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 3 cut(s) 187, 502, 528
CviJI RGCY 9 cut(s) 59, 125, 209, 333, 337, 373, 440, 476, 482
CviKI_1 RGCY 9 cut(s) 59, 125, 209, 333, 337, 373, 440, 476, 482
CviQI GTAC 3 cut(s) 187, 502, 528
DdeI CTNAG 2 cut(s) 81, 309
DpnI GATC 2 cut(s) 417, 543
DpnII GATC 2 cut(s) 415, 541
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco32I GATATC 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 18
EcoRV GATATC 1 cut(s) 498
FaiI YATR 5 cut(s) 235, 290, 428, 464, 568
FaqI GGGAC 1 cut(s) 473
FokI GGATG 1 cut(s) 359
FspBI CTAG 2 cut(s) 477, 525
GlaI GCGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 337
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 1 cut(s) 146
HphI GGTGA 2 cut(s) 21, 362
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 3 cut(s) 136, 202, 539
HpyAV CCTTC 3 cut(s) 7, 352, 395
HpyCH4III ACNGT 2 cut(s) 186, 282
HpyCH4V TGCA 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 81, 309
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 415, 541
LpnPI CCDG 3 cut(s) 93, 172, 319
MaeI CTAG 2 cut(s) 477, 525
MaeIII GTNAC 2 cut(s) 27, 350
MalI GATC 2 cut(s) 417, 543
MboI GATC 2 cut(s) 415, 541
MboII GAAGA 6 cut(s) 113, 122, 273, 445, 524, 527
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 2 cut(s) 143, 318
MluCI AATT 6 cut(s) 18, 44, 113, 220, 423, 516
MnlI CCTC 5 cut(s) 29, 155, 400, 463, 466
MseI TTAA 2 cut(s) 47, 225
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 125
MunI CAATTG 1 cut(s) 516
MvnI CGCG 1 cut(s) 304
NdeII GATC 2 cut(s) 415, 541
NlaIV GGNNCC 2 cut(s) 7, 315
NmuCI GTSAC 2 cut(s) 27, 350
NspV TTCGAA 1 cut(s) 22
PfeI GAWTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 7, 315
PspPI GGNCC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 3 cut(s) 188, 503, 529
RsaNI GTAC 3 cut(s) 187, 502, 528
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 47, 225
Sau3AI GATC 2 cut(s) 415, 541
Sau96I GGNCC 1 cut(s) 336
ScaI AGTACT 1 cut(s) 529
SduI GDGCHC 2 cut(s) 143, 318
SetI ASST 9 cut(s) 61, 82, 127, 195, 211, 315, 335, 411, 484
SfcI CTRYAG 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 6 cut(s) 18, 44, 113, 220, 423, 516
SsiI CCGC 1 cut(s) 304
SspMI CTAG 2 cut(s) 477, 525
TaaI ACNGT 2 cut(s) 186, 282
TaqI TCGA 1 cut(s) 22
TasI AATT 6 cut(s) 18, 44, 113, 220, 423, 516
TatI WGTACW 2 cut(s) 186, 527
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 47, 225
Tru9I TTAA 2 cut(s) 47, 225
TscAI CASTG 2 cut(s) 189, 244
TseFI GTSAC 2 cut(s) 27, 350
Tsp45I GTSAC 2 cut(s) 27, 350
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 189, 244
XapI RAATTY 3 cut(s) 18, 113, 220
XspI CTAG 2 cut(s) 477, 525
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.