Rmu_sc0004344.1_g000009

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004344.1
OG0000290
Physical Location & Seq
Reverse (-)
43504 .. 46398
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004344.1_g000009.1.cds

Sequence Viewer

Length: 1353 bp
atgggttcaaagaagaggggaaaatcaaaagaacgcgaagattcagaaaaaaaagtggagaaggttactagtccaaatgagactgatgacgtggttgatgataaagatgattgtgtatcagctgaaactatgacaaccactgaatcagccaaaggaaaaagcagagggaagcgaattgtggttgcaatgtacaaggtagtggtgaagaaagcacttgggaagaaatttagagttacatacagcgacacgggcaatccaaatggcagaacacgacacactctacagtcatatataggcatgttggtgcggacaatggttcccatcaacgtggaaagctggcctgaggtggatcctgatttgaaagcaaatatttggacagatattcaggatgaactgttggagaagaagagtaaaggtgagttggaaatctcagggagtagtgatgtcttgtctcaagctctagaaactcctgaacactcgggtagggtaaggggtgttggaggcttcatcaacccatcctcctactttaatctgccaaagcagaaaatgattcgacttactaaggcagatatgttggcccgtgataaggagagtgataaagagttggaggacacaaagaatatgcttcttgagcagcaagcaaagacggaagcaatgttatatcaaaggattgcacagctagaagcactagtaacagggaagatagccatgcatccccctgccacgggggacaatgtcatttcccctatatccgacaaaggcagcttccatgataaatcaagaattgacaaatctgatcctaatgatgccaaggtcatggaaaatgtggaggaatgtgacattatacctactcccggaaagggtgccggggtatgtgagctagcagtggataatatcaataatatagttgctttcagttccgtattcgaagagggggaactaagcaagacactacatggagttccattgaaggatggaactgttcgtgtatcagtggatggtatacttaaaccagatgcactgcttcctttccccatcgtgggagagattgaattcgttagggaagctcttgggagtcacgtagtttggcctgaggatcttgttgtccggacaatgtttaagaaaaagaagaagaatccgcaattcgtcaagtcattgtttgatcaagttgagattaatccgtgggtgtcgaagcggtgcaagttgttgtataaacatgcaacaactatcatgaaagaaacggggagttcaataagcacggtattttctaaagaagtgtttggcgaacccacgcaactctttatcttgtctgagaatgtgattaatctgttagatatgcagtggattggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

450

Amino Acids

50.07

Weight (kDa)

6.26

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 863
AccI GTMKAC 1 cut(s) 1003
AccII CGCG 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 1107
AciI CCGC 3 cut(s) 307, 1139, 1195
AclWI GGATC 4 cut(s) 344, 357, 791, 1104
AcsI RAATTY 2 cut(s) 224, 1052
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 7 cut(s) 586, 724, 725, 854, 860, 1039, 1040
AgsI TTSAA 5 cut(s) 9, 361, 970, 1052, 1251
AhlI ACTAGT 2 cut(s) 68, 688
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 7 cut(s) 122, 336, 458, 679, 765, 880, 1067
AluI AGCT 7 cut(s) 122, 336, 458, 679, 765, 880, 1067
Alw26I GTCTC 2 cut(s) 74, 456
AlwI GGATC 4 cut(s) 344, 357, 791, 1104
Ama87I CYCGRG 1 cut(s) 478
Aor13HI TCCGGA 1 cut(s) 1107
AoxI GGCC 3 cut(s) 338, 576, 1088
ApeKI GCWGC 2 cut(s) 634, 762
ApoI RAATTY 2 cut(s) 224, 1052
AseI ATTAAT 2 cut(s) 1176, 1323
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 2 cut(s) 855, 868
AsuHPI GGTGA 2 cut(s) 214, 428
AsuII TTCGAA 1 cut(s) 927
AsuNHI GCTAGC 1 cut(s) 880
AvaI CYCGRG 1 cut(s) 478
AxyI CCTNAGG 2 cut(s) 342, 1092
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 863
BbvI GCAGC 2 cut(s) 646, 774
BccI CCATC 5 cut(s) 329, 523, 968, 992, 1043
BclI TGATCA 1 cut(s) 1162
BcnI CCSGG 2 cut(s) 855, 868
BcoDI GTCTC 2 cut(s) 74, 456
BcuI ACTAGT 2 cut(s) 68, 688
BfaI CTAG 5 cut(s) 69, 461, 680, 689, 881
BfmI CTRYAG 1 cut(s) 281
BisI GCNGC 2 cut(s) 635, 763
BlsI GCNGC 2 cut(s) 636, 764
Bme1390I CCNGG 2 cut(s) 855, 868
BmeT110I CYCGRG 1 cut(s) 478
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 3 cut(s) 318, 351, 865
BmrFI CCNGG 2 cut(s) 855, 868
BmsI GCATC 3 cut(s) 721, 796, 1006
BmtI GCTAGC 1 cut(s) 884
Bpu14I TTCGAA 1 cut(s) 927
BpuEI CTTGAG 2 cut(s) 438, 650
BpuMI CCSGG 2 cut(s) 855, 868
BsaAI YACGTR 1 cut(s) 1081
BsaJI CCNNGG 4 cut(s) 723, 810, 867, 1181
BsaWI WCCGGW 1 cut(s) 1107
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 7 cut(s) 586, 724, 725, 854, 860, 1039, 1040
Bse21I CCTNAGG 2 cut(s) 342, 1092
Bse3DI GCAATG 2 cut(s) 192, 660
BseAI TCCGGA 1 cut(s) 1107
BseDI CCNNGG 4 cut(s) 723, 810, 867, 1181
BseGI GGATG 5 cut(s) 394, 515, 712, 979, 1003
BseLI CCNNNNNNNGG 7 cut(s) 586, 724, 725, 854, 860, 1039, 1040
BseMI GCAATG 2 cut(s) 192, 660
BseMII CTCAG 4 cut(s) 333, 444, 1083, 1302
BseXI GCAGC 2 cut(s) 646, 774
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 3 cut(s) 340, 578, 1090
BshNI GGYRCC 1 cut(s) 863
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 3 cut(s) 855, 867, 1108
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 7 cut(s) 586, 724, 725, 854, 860, 1039, 1040
BsmAI GTCTC 2 cut(s) 74, 456
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 3 cut(s) 340, 578, 1090
BsoBI CYCGRG 1 cut(s) 478
Bsp119I TTCGAA 1 cut(s) 927
Bsp13I TCCGGA 1 cut(s) 1107
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 4 cut(s) 349, 796, 1096, 1162
BspACI CCGC 3 cut(s) 307, 1139, 1195
BspANI GGCC 3 cut(s) 340, 578, 1090
BspCNI CTCAG 4 cut(s) 334, 443, 1084, 1303
BspEI TCCGGA 1 cut(s) 1107
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 1230
BspLI GGNNCC 3 cut(s) 318, 351, 865
BspOI GCTAGC 1 cut(s) 884
BspPI GGATC 4 cut(s) 344, 357, 791, 1104
BspT104I TTCGAA 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 863
BsrDI GCAATG 2 cut(s) 192, 660
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 4 cut(s) 723, 810, 867, 1181
BssMI GATC 4 cut(s) 349, 796, 1096, 1162
BssNAI GTATAC 1 cut(s) 1004
BssT1I CCWWGG 1 cut(s) 810
Bst1107I GTATAC 1 cut(s) 1004
Bst4CI ACNGT 4 cut(s) 285, 396, 982, 1261
Bst6I CTCTTC 3 cut(s) 8, 401, 924
BstAUI TGTACA 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 1081
BstBI TTCGAA 1 cut(s) 927
BstC8I GCNNGC 3 cut(s) 338, 639, 882
BstDEI CTNAG 6 cut(s) 342, 430, 561, 941, 1092, 1311
BstDSI CCRYGG 2 cut(s) 723, 1181
BstF5I GGATG 5 cut(s) 394, 515, 712, 979, 1003
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 4 cut(s) 352, 799, 1099, 1165
BstMAI GTCTC 2 cut(s) 74, 456
BstMBI GATC 4 cut(s) 349, 796, 1096, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 249, 631
BstNSI RCATGY 2 cut(s) 301, 1220
BstSCI CCNGG 2 cut(s) 853, 866
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 646, 774
BstX2I RGATCY 2 cut(s) 349, 1096
BstXI CCANNNNNNTGG 2 cut(s) 328, 817
BstYI RGATCY 2 cut(s) 349, 1096
BstZ17I GTATAC 1 cut(s) 1004
Bsu36I CCTNAGG 2 cut(s) 342, 1092
BsuRI GGCC 3 cut(s) 340, 578, 1090
BtgI CCRYGG 2 cut(s) 723, 1181
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 5 cut(s) 394, 515, 712, 979, 1003
BtsI GCAGTG 3 cut(s) 891, 1019, 1346
BtsIMutI CAGTG 5 cut(s) 138, 891, 999, 1019, 1346
Cac8I GCNNGC 3 cut(s) 338, 639, 882
CciI TCATGA 1 cut(s) 1230
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 1 cut(s) 190
CviAII CATG 7 cut(s) 298, 709, 770, 817, 956, 1217, 1231
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 6 cut(s) 342, 430, 561, 941, 1092, 1311
DpnI GATC 4 cut(s) 351, 798, 1098, 1164
DpnII GATC 4 cut(s) 349, 796, 1096, 1162
Eam1104I CTCTTC 3 cut(s) 8, 401, 924
EarI CTCTTC 3 cut(s) 8, 401, 924
Eco130I CCWWGG 1 cut(s) 810
Eco81I CCTNAGG 2 cut(s) 342, 1092
Eco88I CYCGRG 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 1052
EcoT14I CCWWGG 1 cut(s) 810
EcoT22I ATGCAT 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 7 cut(s) 301, 712, 773, 820, 959, 1220, 1234
FaqI GGGAC 1 cut(s) 743
FatI CATG 7 cut(s) 297, 708, 769, 816, 955, 1216, 1230
FbaI TGATCA 1 cut(s) 1162
FblI GTMKAC 1 cut(s) 1003
Fnu4HI GCNGC 2 cut(s) 635, 763
FokI GGATG 5 cut(s) 401, 502, 699, 986, 1010
Fsp4HI GCNGC 2 cut(s) 635, 763
FspBI CTAG 5 cut(s) 69, 461, 680, 689, 881
GluI GCNGC 2 cut(s) 635, 763
HaeIII GGCC 3 cut(s) 340, 578, 1090
HapII CCGG 3 cut(s) 855, 867, 1108
Hin1II CATG 7 cut(s) 301, 712, 773, 820, 959, 1220, 1234
HinfI GANTC 5 cut(s) 41, 143, 550, 1075, 1135
HpaII CCGG 3 cut(s) 855, 867, 1108
HphI GGTGA 2 cut(s) 214, 428
Hpy166II GTNNAC 1 cut(s) 1004
Hpy188I TCNGA 4 cut(s) 46, 754, 796, 1312
Hpy188III TCNNGA 8 cut(s) 353, 386, 461, 470, 629, 780, 1108, 1231
Hpy8I GTNNAC 1 cut(s) 1004
HpyAV CCTTC 2 cut(s) 55, 964
HpyCH4III ACNGT 4 cut(s) 285, 396, 982, 1261
HpyCH4IV ACGT 3 cut(s) 90, 327, 1080
HpyCH4V TGCA 7 cut(s) 185, 674, 712, 1019, 1200, 1220, 1339
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 631
HpyF3I CTNAG 6 cut(s) 342, 430, 561, 941, 1092, 1311
HpySE526I ACGT 3 cut(s) 90, 327, 1080
Hsp92II CATG 7 cut(s) 301, 712, 773, 820, 959, 1220, 1234
Kpn2I TCCGGA 1 cut(s) 1107
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 4 cut(s) 349, 796, 1096, 1162
Lsp1109I GCAGC 2 cut(s) 646, 774
LweI GCATC 3 cut(s) 721, 796, 1006
MaeI CTAG 5 cut(s) 69, 461, 680, 689, 881
MaeII ACGT 3 cut(s) 90, 327, 1080
MaeIII GTNAC 5 cut(s) 64, 232, 691, 836, 1076
MalI GATC 4 cut(s) 351, 798, 1098, 1164
MboI GATC 4 cut(s) 349, 796, 1096, 1162
MflI RGATCY 2 cut(s) 349, 1096
MluCI AATT 5 cut(s) 174, 224, 783, 1052, 1142
MlyI GAGTC 1 cut(s) 1084
MmeI TCCRAC 5 cut(s) 378, 402, 478, 585, 777
MnlI CCTC 9 cut(s) 9, 158, 337, 494, 529, 601, 823, 925, 1087
Mph1103I ATGCAT 1 cut(s) 714
MroI TCCGGA 1 cut(s) 1107
MseI TTAA 5 cut(s) 528, 1008, 1119, 1176, 1323
MslI CAYNNNNRTG 2 cut(s) 302, 326
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 3 cut(s) 855, 867, 1108
MspR9I CCNGG 2 cut(s) 855, 868
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 249, 631
NciI CCSGG 2 cut(s) 855, 868
NdeII GATC 4 cut(s) 349, 796, 1096, 1162
NheI GCTAGC 1 cut(s) 880
NlaIII CATG 7 cut(s) 301, 712, 773, 820, 959, 1220, 1234
NlaIV GGNNCC 3 cut(s) 318, 351, 865
NmuCI GTSAC 2 cut(s) 836, 1076
NsiI ATGCAT 1 cut(s) 714
NspI RCATGY 2 cut(s) 301, 1220
NspV TTCGAA 1 cut(s) 927
PagI TCATGA 1 cut(s) 1230
PfeI GAWTC 4 cut(s) 41, 143, 550, 1135
PflFI GACNNNGTC 1 cut(s) 734
PfoI TCCNGGA 1 cut(s) 853
PkrI GCNGC 2 cut(s) 636, 764
PleI GAGTC 1 cut(s) 1083
PpsI GAGTC 1 cut(s) 1083
Ppu21I YACGTR 1 cut(s) 1081
PshBI ATTAAT 2 cut(s) 1176, 1323
PspN4I GGNNCC 3 cut(s) 318, 351, 865
PspPI GGNCC 1 cut(s) 577
PsuI RGATCY 2 cut(s) 349, 1096
PsyI GACNNNGTC 1 cut(s) 734
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 302, 326
SaqAI TTAA 5 cut(s) 528, 1008, 1119, 1176, 1323
SatI GCNGC 2 cut(s) 635, 763
Sau3AI GATC 4 cut(s) 349, 796, 1096, 1162
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 1 cut(s) 1084
ScrFI CCNGG 2 cut(s) 855, 868
SfaNI GCATC 3 cut(s) 721, 796, 1006
SfcI CTRYAG 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 927
SmiMI CAYNNNNRTG 2 cut(s) 302, 326
SmlI CTYRAG 2 cut(s) 453, 629
SmoI CTYRAG 2 cut(s) 453, 629
SpeI ACTAGT 2 cut(s) 68, 688
Sse9I AATT 5 cut(s) 174, 224, 783, 1052, 1142
SsiI CCGC 3 cut(s) 307, 1139, 1195
SspI AATATT 1 cut(s) 370
SspMI CTAG 5 cut(s) 69, 461, 680, 689, 881
StyD4I CCNGG 2 cut(s) 853, 866
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 4 cut(s) 285, 396, 982, 1261
TaiI ACGT 3 cut(s) 93, 330, 1083
TaqI TCGA 3 cut(s) 553, 927, 1190
TasI AATT 5 cut(s) 174, 224, 783, 1052, 1142
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 4 cut(s) 41, 143, 550, 1135
Tru1I TTAA 5 cut(s) 528, 1008, 1119, 1176, 1323
Tru9I TTAA 5 cut(s) 528, 1008, 1119, 1176, 1323
TscAI CASTG 5 cut(s) 145, 891, 999, 1026, 1346
TseFI GTSAC 2 cut(s) 836, 1076
TseI GCWGC 2 cut(s) 634, 762
Tsp45I GTSAC 2 cut(s) 836, 1076
TspDTI ATGAA 3 cut(s) 405, 496, 1247
TspGWI ACGGA 3 cut(s) 662, 910, 1170
TspRI CASTG 5 cut(s) 145, 891, 999, 1026, 1346
Tth111I GACNNNGTC 1 cut(s) 734
VspI ATTAAT 2 cut(s) 1176, 1323
XapI RAATTY 2 cut(s) 224, 1052
XbaI TCTAGA 1 cut(s) 460
XceI RCATGY 2 cut(s) 301, 1220
XmiI GTMKAC 1 cut(s) 1003
XspI CTAG 5 cut(s) 69, 461, 680, 689, 881
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.