Rh2AG431600

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000290
Physical Location & Seq
Reverse (-)
64096196 .. 64109623
13428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG431600.1

Sequence Viewer

Length: 915 bp
ATGGGTTCCAAGAAGGGAAAATCAAAAGGAGGCAAAAAATCAAAGAATAAAGCGGATAATGATACTAGTCCTGTTGAGACTGATGGCATGGTTGATGCTGGAGAGGATTCTGCTACAGTTGAAACTATGACGAGCACGGAATCAGCCAAAGGAAAAAGCAGAGGAAAGCGAACTGTGGTTGCTTTGTGCAAGGTTGTGGTGAAGAAAGCACTTGGGAGGAAATTGAAGGTGACCTACAGTGAAACAGGCAATCCAAATGGCAGAACACGGCACATTCTACAGTCGTATATAGGCATGTTGGTGCGGAAAATGGTTCCCATCAACGTTGTTAGCTGGCCTGAGGTGGATCGAGACTTGAAAGAAAATCTTTGGATCAATGTTCAGGATACATTCAAAGTAGCCCCTGAAAGTAGAAAACTAGTGTTGACATCAGCTGGCACAAAATGGAGACAATTCAAGACCACATTAACAAATAAGTATGTGCTGCCATTCTTGGGCAAGAAGAAAAAATTGAGAAAGCCACCGAAGCAGTACTCCTTTGTTGGCCTACAACCATGGAAGGAATTTGTAAAACAGCGGTGCACTGAGAAATGGCTGAAACGTACTTTTCCTGAAGGAGAGATAATTGATCATGCAACTATGTGGAAGAAAGCTCGTGTACCAAAAAATGGAAAGATAGATGAAGAACTGTCATCGGTGGCAACAAAAATACTGGTTGGGAGTCTTGCACATTCTGAGAAACTTATGGCTCCACATGCTGAGTTTCATTGTGTTGCTCCTGGACACCATTGCCAACCTAAGGATCCTGTTGCCGCACACCCTCATCTTCCTCCTGCTGCACTCCTTCATTTACCTGCTGCTGCACATTCTCACCTTGTTGCAATTCCAAAAACACATCAAACTCCCAACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

304

Amino Acids

33.76

Weight (kDa)

9.99

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 862
AccB7I CCANNNNNTGG 1 cut(s) 668
AciI CCGC 4 cut(s) 53, 304, 577, 813
AclI AACGTT 1 cut(s) 324
AclWI GGATC 4 cut(s) 354, 380, 797, 810
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 3 cut(s) 533, 604, 660
AfiI CCNNNNNNNGG 3 cut(s) 494, 668, 799
AgsI TTSAA 5 cut(s) 122, 226, 358, 394, 457
AhlI ACTAGT 2 cut(s) 65, 418
AjnI CCWGG 1 cut(s) 778
AluBI AGCT 3 cut(s) 333, 434, 653
AluI AGCT 3 cut(s) 333, 434, 653
Alw21I GWGCWC 2 cut(s) 137, 584
Alw26I GTCTC 3 cut(s) 71, 345, 442
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 4 cut(s) 354, 380, 797, 810
AoxI GGCC 2 cut(s) 335, 544
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 4 cut(s) 484, 836, 857, 860
ApoI RAATTY 1 cut(s) 563
AsuHPI GGTGA 3 cut(s) 211, 241, 863
AxyI CCTNAGG 2 cut(s) 339, 798
BaeGI GKGCMC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 802
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 137, 584
BbvI GCAGC 4 cut(s) 471, 823, 844, 847
BccI CCATC 2 cut(s) 77, 326
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 780
BciVI GTATCC 1 cut(s) 379
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 3 cut(s) 71, 345, 442
BcuI ACTAGT 2 cut(s) 65, 418
BfaI CTAG 2 cut(s) 66, 419
BfmI CTRYAG 3 cut(s) 114, 235, 278
BfuAI ACCTGC 1 cut(s) 862
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 5 cut(s) 485, 813, 837, 858, 861
BlsI GCNGC 5 cut(s) 486, 814, 838, 859, 862
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 780
BmiI GGNNCC 4 cut(s) 7, 315, 750, 804
BmrFI CCNGG 1 cut(s) 780
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 554
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 668, 799
Bse1I ACTGG 1 cut(s) 717
Bse21I CCTNAGG 2 cut(s) 339, 798
Bse3DI GCAATG 1 cut(s) 787
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 1 cut(s) 554
BseLI CCNNNNNNNGG 3 cut(s) 494, 668, 799
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 4 cut(s) 330, 576, 726, 750
BseNI ACTGG 1 cut(s) 717
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 4 cut(s) 471, 823, 844, 847
BsgI GTGCAG 2 cut(s) 822, 846
BshFI GGCC 2 cut(s) 337, 546
BsiHKAI GWGCWC 2 cut(s) 137, 584
BslI CCNNNNNNNGG 3 cut(s) 494, 668, 799
BsmAI GTCTC 3 cut(s) 71, 345, 442
BsnI GGCC 2 cut(s) 337, 546
Bsp1286I GDGCHC 2 cut(s) 137, 584
Bsp143I GATC 4 cut(s) 346, 372, 628, 802
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 4 cut(s) 53, 304, 577, 813
BspANI GGCC 2 cut(s) 337, 546
BspCNI CTCAG 4 cut(s) 331, 577, 727, 751
BspLI GGNNCC 4 cut(s) 7, 315, 750, 804
BspMI ACCTGC 1 cut(s) 862
BspPI GGATC 4 cut(s) 354, 380, 797, 810
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 1 cut(s) 717
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 4 cut(s) 346, 372, 628, 802
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 1 cut(s) 554
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 5 cut(s) 118, 175, 239, 282, 690
BstC8I GCNNGC 2 cut(s) 335, 436
BstDEI CTNAG 5 cut(s) 339, 585, 735, 759, 798
BstDSI CCRYGG 1 cut(s) 554
BstEII GGTNACC 1 cut(s) 229
BstKTI GATC 4 cut(s) 349, 375, 631, 805
BstMAI GTCTC 3 cut(s) 71, 345, 442
BstMBI GATC 4 cut(s) 346, 372, 628, 802
BstMWI GCNNNNNNNGC 2 cut(s) 526, 755
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 2 cut(s) 298, 758
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 778
BstSFI CTRYAG 3 cut(s) 114, 235, 278
BstSLI GKGCMC 1 cut(s) 584
BstV1I GCAGC 4 cut(s) 471, 823, 844, 847
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
Bsu36I CCTNAGG 2 cut(s) 339, 798
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 337, 546
BtgI CCRYGG 1 cut(s) 554
BtsIMutI CAGTG 2 cut(s) 244, 582
BveI ACCTGC 1 cut(s) 862
Cac8I GCNNGC 2 cut(s) 335, 436
Csp6I GTAC 3 cut(s) 532, 603, 659
CviAII CATG 5 cut(s) 88, 295, 555, 632, 755
CviQI GTAC 3 cut(s) 532, 603, 659
DdeI CTNAG 5 cut(s) 339, 585, 735, 759, 798
DpnI GATC 4 cut(s) 348, 374, 630, 804
DpnII GATC 4 cut(s) 346, 372, 628, 802
Eco130I CCWWGG 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 633
Eco81I CCTNAGG 2 cut(s) 339, 798
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 5 cut(s) 91, 298, 558, 635, 758
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 5 cut(s) 87, 294, 554, 631, 754
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 485, 813, 837, 858, 861
Fsp4HI GCNGC 5 cut(s) 485, 813, 837, 858, 861
FspBI CTAG 2 cut(s) 66, 419
GluI GCNGC 5 cut(s) 485, 813, 837, 858, 861
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 337, 546
Hin1II CATG 5 cut(s) 91, 298, 558, 635, 758
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 3 cut(s) 107, 140, 721
HphI GGTGA 3 cut(s) 211, 241, 863
Hpy166II GTNNAC 3 cut(s) 426, 582, 659
Hpy188I TCNGA 1 cut(s) 736
Hpy188III TCNNGA 4 cut(s) 350, 383, 457, 611
Hpy8I GTNNAC 3 cut(s) 426, 582, 659
HpyAV CCTTC 5 cut(s) 7, 220, 553, 608, 854
HpyCH4III ACNGT 5 cut(s) 118, 175, 239, 282, 690
HpyCH4IV ACGT 2 cut(s) 324, 601
HpyCH4V TGCA 7 cut(s) 189, 582, 635, 728, 839, 863, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 526, 755
HpyF3I CTNAG 5 cut(s) 339, 585, 735, 759, 798
HpySE526I ACGT 2 cut(s) 324, 601
Hsp92II CATG 5 cut(s) 91, 298, 558, 635, 758
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 346, 372, 628, 802
LmnI GCTCC 2 cut(s) 754, 781
Lsp1109I GCAGC 4 cut(s) 471, 823, 844, 847
LweI GCATC 1 cut(s) 85
MaeI CTAG 2 cut(s) 66, 419
MaeII ACGT 2 cut(s) 324, 601
MaeIII GTNAC 1 cut(s) 229
MalI GATC 4 cut(s) 348, 374, 630, 804
MboI GATC 4 cut(s) 346, 372, 628, 802
MboII GAAGA 5 cut(s) 214, 514, 658, 695, 818
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 2 cut(s) 137, 584
MluCI AATT 6 cut(s) 221, 452, 509, 563, 624, 882
MlyI GAGTC 1 cut(s) 730
MnlI CCTC 7 cut(s) 23, 97, 155, 210, 334, 831, 840
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 2 cut(s) 434, 577
MspR9I CCNGG 1 cut(s) 780
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 2 cut(s) 526, 755
NcoI CCATGG 1 cut(s) 554
NdeII GATC 4 cut(s) 346, 372, 628, 802
NlaIII CATG 5 cut(s) 91, 298, 558, 635, 758
NlaIV GGNNCC 4 cut(s) 7, 315, 750, 804
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 2 cut(s) 298, 758
PfeI GAWTC 2 cut(s) 107, 140
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 5 cut(s) 486, 814, 838, 859, 862
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 778
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 4 cut(s) 7, 315, 750, 804
PsuI RGATCY 1 cut(s) 802
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 3 cut(s) 533, 604, 660
RsaNI GTAC 3 cut(s) 532, 603, 659
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 5 cut(s) 485, 813, 837, 858, 861
Sau3AI GATC 4 cut(s) 346, 372, 628, 802
ScaI AGTACT 1 cut(s) 533
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 2 cut(s) 137, 584
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 3 cut(s) 114, 235, 278
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 2 cut(s) 65, 418
Sse9I AATT 6 cut(s) 221, 452, 509, 563, 624, 882
SsiI CCGC 4 cut(s) 53, 304, 577, 813
SspMI CTAG 2 cut(s) 66, 419
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 5 cut(s) 118, 175, 239, 282, 690
TaiI ACGT 2 cut(s) 327, 604
TaqI TCGA 1 cut(s) 349
TasI AATT 6 cut(s) 221, 452, 509, 563, 624, 882
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 2 cut(s) 107, 140
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 2 cut(s) 244, 589
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 4 cut(s) 484, 836, 857, 860
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 696, 755, 836
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 244, 589
Van91I CCANNNNNTGG 1 cut(s) 668
VneI GTGCAC 1 cut(s) 580
XapI RAATTY 1 cut(s) 563
XceI RCATGY 2 cut(s) 298, 758
XspI CTAG 2 cut(s) 66, 419
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.