Rh5BG230700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000290
Physical Location & Seq
Forward (+)
27112936 .. 27117269
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG230700.1

Sequence Viewer

Length: 516 bp
ATGTGCTCCAACATCTTCAAAGATCGATCTGTTCTCCAACATCTTCAAAGATCGATCTGTGCTCCAATATCTTCAAAGCGTACCAACTTTCGAGAGATCGATCTGTGCTCCAAGCTCTTCAAAGCAGATAGGATGGGAAAGACGAAATCCACCGGTACTGAAAATGAGGGATCTGGAAAACGAAAAGCCACATGGCCTGATGAGATCAATCCAGAGTATCACAAATTTCGTGACGTTGGAATTAGTCCTGAAATGATGGCTGTTTATGATAACATGTTTAGGGGTAGCACAGCCCTAGGTCACTCTGTCATGATTCCCTCAGCTACTATAGATATTGAAGAGGTGGTGGAGGATTCTGAGCATAATGACATTTCTGGAGATGATGAGGAGATGGACCAGCAAGGTGAACCAAAAGGGAAAAAGAGAAAAACTGTGGAGTGCCAAACTGGGCGTAATAAAGAAAAAAAAGATAAAGGAGAACTAAGATTGCGTGATGTTCAGTGTGTACGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.44

Weight (kDa)

6.91

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000290)

Species Orthologous Gene IDs
prunus_persica Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1 Prupe.7G026800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0352291 RchiOBHm_Chr1g0352301 RchiOBHm_Chr2g0145261 RchiOBHm_Chr2g0160781 RchiOBHm_Chr2g0160871 RchiOBHm_Chr3g0460901 RchiOBHm_Chr3g0494431 RchiOBHm_Chr3g0494441 RchiOBHm_Chr4g0385451 RchiOBHm_Chr4g0417051 RchiOBHm_Chr4g0424111 RchiOBHm_Chr5g0035911 RchiOBHm_Chr6g0269251 RchiOBHm_Chr6g0274141 RchiOBHm_Chr7g0191841 RchiOBHm_Chr7g0196691 RchiOBHm_Chr7g0211271 RchiOBHm_Chr7g0227321 RchiOBHm_Chr7g0242811
rosa_laevigata RLG00000013212
rosa_multiflora Rmu_co8387591.1_g000001 Rmu_sc0000147.1_g000094 Rmu_sc0000340.1_g000034 Rmu_sc0000546.1_g000048 Rmu_sc0001461.1_g000092 Rmu_sc0001659.1_g000042 Rmu_sc0002460.1_g000027 Rmu_sc0003170.1_g000021 Rmu_sc0004301.1_g000015 Rmu_sc0004344.1_g000009 Rmu_sc0005539.1_g000024 Rmu_sc0006803.1_g000018 Rmu_sc0006888.1_g000057 Rmu_sc0009330.1_g000004 Rmu_sc0010704.1_g000001 Rmu_sc0012787.1_g000002 Rmu_sc0023684.1_g000002 Rmu_ssc0000189.1_g000010
rosa_roxburghii Rroxscaffold_5G00377480 Rroxscaffold_6G00389290 Rroxscaffold_6G00414410 Rroxscaffold_7G00202010
rosa_rugosa Rorug01G0242100 Rorug02G0188500 Rorug02G0273900 Rorug03G0342600 Rorug05G0239000 Rorug07G0163300 Rorug07G0192100
rosa_samantha Rh1BG091000 Rh1BG200300 Rh1DG228100 Rh2AG268900 Rh2AG431600 Rh2AG508400 Rh2CG258700 Rh2CG417500 Rh2CG493900 Rh3AG323800 Rh3BG237800 Rh3CG306700 Rh3DG204700 Rh3DG259400 Rh4AG203100 Rh4AG377200 Rh4BG054300 Rh4BG125100 Rh4BG146000 Rh4BG251900 Rh4DG132500 Rh4DG155000 Rh4DG384000 Rh5BG230700 Rh5CG382700 Rh5CG532300 Rh5DG235600 Rh5DG259700 Rh5DG320000 Rh6AG162900 Rh6CG065400 Rh6CG065500 Rh6CG307600 Rh6CG310500 Rh6CG391900 Rh6DG062500 Rh6DG062600 Rh6DG187500 Rh7BG296200 Rh7DG266900 Rh7DG322300
rosa_wichuraiana Rw2G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 3 cut(s) 82, 157, 507
AflIII ACRYGT 1 cut(s) 273
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 5 cut(s) 19, 47, 75, 121, 338
AluBI AGCT 2 cut(s) 115, 323
AluI AGCT 2 cut(s) 115, 323
Alw21I GWGCWC 3 cut(s) 8, 64, 110
AlwI GGATC 1 cut(s) 178
AoxI GGCC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 224
AsiGI ACCGGT 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 394
AvrII CCTAGG 1 cut(s) 295
Bbv12I GWGCWC 3 cut(s) 8, 64, 110
BbvCI CCTCAGC 1 cut(s) 319
BccI CCATC 3 cut(s) 127, 250, 385
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 327
BlnI CCTAGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 319
Bsa29I ATCGAT 3 cut(s) 25, 53, 99
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 451
BseCI ATCGAT 3 cut(s) 25, 53, 99
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 333, 348
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 401
BshFI GGCC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 152
BshVI ATCGAT 3 cut(s) 25, 53, 99
BsiHKAI GWGCWC 3 cut(s) 8, 64, 110
BsiSI CCGG 1 cut(s) 153
BsnI GGCC 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 8, 64, 110
Bsp143I GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 332, 349
BspDI ATCGAT 3 cut(s) 25, 53, 99
BspHI TCATGA 1 cut(s) 309
BspPI GGATC 1 cut(s) 178
BspQI GCTCTTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 433
Bst6I CTCTTC 2 cut(s) 122, 333
BstDEI CTNAG 3 cut(s) 319, 357, 482
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 8 cut(s) 25, 29, 53, 57, 99, 103, 173, 207
BstMBI GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
BstNSI RCATGY 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu15I ATCGAT 3 cut(s) 25, 53, 99
BsuRI GGCC 1 cut(s) 196
BsuTUI ATCGAT 3 cut(s) 25, 53, 99
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 394
ClaI ATCGAT 3 cut(s) 25, 53, 99
Csp6I GTAC 3 cut(s) 81, 156, 506
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 3 cut(s) 192, 274, 310
CviJI RGCY 6 cut(s) 115, 188, 196, 260, 293, 323
CviKI_1 RGCY 6 cut(s) 115, 188, 196, 260, 293, 323
CviQI GTAC 3 cut(s) 81, 156, 506
DdeI CTNAG 3 cut(s) 319, 357, 482
DpnI GATC 8 cut(s) 24, 28, 52, 56, 98, 102, 172, 206
DpnII GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
Eam1104I CTCTTC 2 cut(s) 122, 333
EarI CTCTTC 2 cut(s) 122, 333
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 3 cut(s) 195, 277, 313
FaiI YATR 6 cut(s) 193, 267, 275, 311, 329, 363
FatI CATG 3 cut(s) 191, 273, 309
FokI GGATG 1 cut(s) 145
FspBI CTAG 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 153
Hin1II CATG 3 cut(s) 195, 277, 313
HinfI GANTC 2 cut(s) 313, 353
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 407, 506
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 7 cut(s) 92, 174, 212, 230, 248, 310, 375
Hpy8I GTNNAC 2 cut(s) 407, 506
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 319, 357, 482
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 3 cut(s) 195, 277, 313
Kzo9I GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 11, 67, 113
LpnPI CCDG 8 cut(s) 159, 166, 210, 225, 261, 360, 410, 432
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 230, 299
MalI GATC 8 cut(s) 24, 28, 52, 56, 98, 102, 172, 206
MboI GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
MboII GAAGA 5 cut(s) 7, 35, 63, 109, 350
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 3 cut(s) 8, 64, 110
MluCI AATT 2 cut(s) 224, 240
MmeI TCCRAC 3 cut(s) 33, 61, 217
MnlI CCTC 5 cut(s) 160, 328, 334, 343, 379
MseI TTAA 1 cut(s) 514
MspI CCGG 1 cut(s) 153
NdeII GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
NlaIII CATG 3 cut(s) 195, 277, 313
NmuCI GTSAC 2 cut(s) 230, 299
NspI RCATGY 1 cut(s) 277
PagI TCATGA 1 cut(s) 309
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 313, 353
PinAI ACCGGT 1 cut(s) 152
PscI ACATGT 1 cut(s) 273
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 3 cut(s) 82, 157, 507
RsaNI GTAC 3 cut(s) 81, 156, 506
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 514
Sau3AI GATC 8 cut(s) 22, 26, 50, 54, 96, 100, 170, 204
Sau96I GGNCC 1 cut(s) 394
SduI GDGCHC 3 cut(s) 8, 64, 110
SetI ASST 6 cut(s) 117, 237, 301, 325, 345, 406
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 394
Sse9I AATT 2 cut(s) 224, 240
SspMI CTAG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 237
TaqI TCGA 4 cut(s) 25, 53, 91, 99
TasI AATT 2 cut(s) 224, 240
TfiI GAWTC 2 cut(s) 313, 353
Tru1I TTAA 1 cut(s) 514
Tru9I TTAA 1 cut(s) 514
TscAI CASTG 1 cut(s) 506
TseFI GTSAC 2 cut(s) 230, 299
Tsp45I GTSAC 2 cut(s) 230, 299
TspRI CASTG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.